Wall clock time and date at job start Mon Mar 30 2020 04:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00148 * 2 1 4 4 H 1.48503 * 109.47460 * 270.00102 * 3 2 1 5 5 H 1.48498 * 109.47112 * 30.00236 * 3 2 1 6 6 H 1.48496 * 109.47484 * 150.00291 * 3 2 1 7 7 C 1.37874 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00238 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00491 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47403 * 180.02562 * 9 7 2 11 11 O 1.45197 * 109.47093 * 180.02562 * 10 9 7 12 12 C 1.34230 * 117.00221 * 179.97438 * 11 10 9 13 13 O 1.20826 * 119.99808 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00109 * 179.97438 * 12 11 10 15 15 C 1.53009 * 109.47158 * 179.97438 * 14 12 11 16 16 O 1.42899 * 109.47113 * 180.02562 * 15 14 12 17 17 C 1.42903 * 113.99629 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.53003 * 117.49371 * 243.61887 * 18 17 16 20 20 C 1.53001 * 117.49608 * 174.99962 * 18 17 16 21 21 H 0.97000 * 120.00050 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47298 * 59.99334 * 9 7 2 23 23 H 1.09006 * 109.46359 * 299.99556 * 9 7 2 24 24 H 1.08995 * 109.47540 * 59.99356 * 10 9 7 25 25 H 1.09006 * 109.46898 * 299.99101 * 10 9 7 26 26 H 1.08997 * 109.47397 * 60.00476 * 14 12 11 27 27 H 1.08998 * 109.47229 * 299.99518 * 14 12 11 28 28 H 1.09007 * 109.46516 * 60.00039 * 15 14 12 29 29 H 1.09004 * 109.47113 * 300.00507 * 15 14 12 30 30 H 1.09002 * 109.47382 * 59.99956 * 17 16 15 31 31 H 1.09001 * 109.46938 * 299.99942 * 17 16 15 32 32 H 1.08995 * 115.55630 * 29.32572 * 18 17 16 33 33 H 1.08998 * 117.50656 * 0.02562 * 19 18 17 34 34 H 1.09001 * 117.49674 * 145.02590 * 19 18 17 35 35 H 1.09003 * 117.49710 * 214.97494 * 20 18 17 36 36 H 1.08998 * 117.50185 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0014 11 8 5.4735 -2.6366 -0.0002 12 6 6.0829 -3.8325 -0.0007 13 8 5.4248 -4.8459 -0.0016 14 6 7.5878 -3.9114 -0.0001 15 6 8.0216 -5.3787 -0.0002 16 8 9.4487 -5.4534 0.0010 17 6 9.9607 -6.7876 0.0004 18 6 11.4902 -6.7467 0.0023 19 6 12.2139 -7.3296 -1.2132 20 6 12.2323 -8.0795 0.1204 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6808 0.8904 23 1 3.8751 -0.6797 -0.8896 24 1 3.6584 -3.1495 -0.8919 25 1 3.6579 -3.1513 0.8880 26 1 7.9772 -3.4179 0.8903 27 1 7.9779 -3.4168 -0.8896 28 1 7.6322 -5.8726 -0.8905 29 1 7.6315 -5.8730 0.8895 30 1 9.6120 -7.3103 -0.8903 31 1 9.6105 -7.3115 0.8897 32 1 11.9367 -5.8776 0.4853 33 1 11.6005 -7.7418 -2.0144 34 1 13.1368 -6.8439 -1.5301 35 1 13.1672 -8.0870 0.6807 36 1 11.6309 -8.9853 0.1970 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751718666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:53 Heat of formation + Delta-G solvation = -143.853594 kcal Electronic energy + Delta-G solvation = -16383.480752 eV Core-core repulsion = 13446.584210 eV Total energy + Delta-G solvation = -2936.896542 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.54537 -39.46348 -37.95682 -37.40085 -35.40500 -33.25717 -32.49616 -28.24058 -27.21967 -24.95161 -23.24709 -22.67727 -21.95738 -21.36543 -19.32664 -18.62476 -17.95497 -17.76102 -17.04099 -16.80719 -16.38043 -16.18963 -15.52798 -15.22727 -14.81606 -14.36663 -14.24590 -14.17575 -13.30903 -13.15035 -12.67365 -12.64824 -12.48722 -12.39518 -12.36490 -12.03334 -11.81637 -11.60138 -11.50419 -11.45602 -11.32953 -11.18643 -10.81635 -10.50315 -8.34847 -6.43240 1.12659 1.38633 1.40251 1.50956 1.53447 2.34347 2.61174 2.96468 3.00034 3.58489 3.81390 3.94686 3.98026 4.01929 4.16544 4.17684 4.24936 4.32100 4.41772 4.50147 4.62453 4.64539 4.75348 4.76052 4.78861 5.02135 5.04881 5.23777 5.24799 5.28349 5.49656 5.54804 6.12194 6.14835 6.62832 6.66908 7.21938 8.81163 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.073798 B = 0.002956 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.324979 B = 9471.115253 C = 9743.543921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.243 1.243 7 C -0.543 4.543 8 H 0.035 0.965 9 C -0.005 4.005 10 C 0.093 3.907 11 O -0.359 6.359 12 C 0.462 3.538 13 O -0.546 6.546 14 C -0.102 4.102 15 C 0.079 3.921 16 O -0.395 6.395 17 C 0.089 3.911 18 C -0.169 4.169 19 C -0.179 4.179 20 C -0.165 4.165 21 H 0.271 0.729 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.006 -11.634 -0.314 28.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.167 1.167 7 C -0.581 4.581 8 H 0.053 0.947 9 C -0.042 4.042 10 C 0.019 3.981 11 O -0.276 6.276 12 C 0.307 3.693 13 O -0.437 6.437 14 C -0.140 4.140 15 C 0.002 3.998 16 O -0.315 6.315 17 C 0.013 3.987 18 C -0.187 4.187 19 C -0.216 4.216 20 C -0.202 4.202 21 H 0.079 0.921 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 25.735 -11.651 -0.312 28.251 hybrid contribution -0.847 0.242 -0.019 0.881 sum 24.888 -11.409 -0.331 27.381 Atomic orbital electron populations 1.70041 1.08341 1.28639 1.51353 1.25974 0.95698 1.03659 0.93431 0.85583 0.79534 0.77581 0.79542 1.18788 1.20652 1.16658 1.21121 0.90768 0.93783 1.52438 0.94682 1.19476 0.94123 0.92042 0.98573 1.22964 0.74079 0.99813 1.01224 1.86464 1.24487 1.33462 1.83167 1.24108 0.92922 0.80958 0.71336 1.90652 1.68543 1.37305 1.47179 1.21141 0.84926 0.98914 1.08975 1.22060 0.80950 0.95018 1.01777 1.87762 1.19857 1.28266 1.95639 1.22160 0.92533 0.83087 1.00933 1.22139 0.92555 0.99247 1.04779 1.23169 1.02896 1.03802 0.91767 1.23079 1.02379 0.94473 1.00264 0.92050 0.94549 0.94654 0.92343 0.92372 0.84854 0.84873 0.92539 0.92475 0.92522 0.92177 0.87282 0.88441 0.87910 0.87309 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.69 13.96 21.45 0.30 -58.39 16 2 C 0.01 0.60 5.47 84.65 0.46 1.06 16 3 Si 0.96 43.29 27.47 68.60 1.88 45.17 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 7 C -0.54 -31.43 9.66 25.60 0.25 -31.19 16 8 H 0.03 2.23 7.99 -2.91 -0.02 2.21 16 9 C 0.00 -0.22 4.42 29.85 0.13 -0.09 16 10 C 0.09 3.93 5.40 71.98 0.39 4.32 16 11 O -0.36 -12.89 10.22 -51.42 -0.53 -13.41 16 12 C 0.46 14.36 7.96 71.24 0.57 14.93 16 13 O -0.55 -20.26 15.73 21.96 0.35 -19.91 16 14 C -0.10 -2.13 6.18 29.85 0.18 -1.95 16 15 C 0.08 1.63 5.23 71.99 0.38 2.01 16 16 O -0.40 -8.00 10.34 -148.98 -1.54 -9.54 16 17 C 0.09 1.44 6.22 71.98 0.45 1.89 16 18 C -0.17 -2.37 6.06 -10.79 -0.07 -2.44 16 19 C -0.18 -2.08 10.18 30.60 0.31 -1.76 16 20 C -0.17 -1.70 10.25 30.60 0.31 -1.38 16 21 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 22 H 0.04 1.67 7.20 -2.39 -0.02 1.65 16 23 H 0.04 1.60 7.57 -2.38 -0.02 1.58 16 24 H 0.06 2.53 8.13 -2.39 -0.02 2.51 16 25 H 0.06 2.52 8.13 -2.38 -0.02 2.50 16 26 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 1.21 8.10 -2.38 -0.02 1.19 16 29 H 0.06 1.22 8.10 -2.38 -0.02 1.20 16 30 H 0.06 0.85 7.88 -2.39 -0.02 0.83 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.08 8.03 -2.39 -0.02 1.06 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -68.11 311.94 4.81 -63.29 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.98 Total: 7.39 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 3.37 Total: -14.60 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.30 Total: -58.39 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.72 Total: -42.86 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Total: -68.11 4.81 -63.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751718666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.561 kcal (2) G-P(sol) polarization free energy of solvation -68.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds