Wall clock time and date at job start Mon Mar 30 2020 04:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47010 * 2 1 4 4 H 1.09001 * 109.47466 * 305.00137 * 3 2 1 5 5 C 1.50701 * 109.47176 * 184.99891 * 3 2 1 6 6 H 1.07995 * 120.00385 * 240.00219 * 5 3 2 7 7 C 1.37882 * 119.99927 * 60.00062 * 5 3 2 8 8 N 1.31512 * 119.99626 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00223 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47319 * 89.99604 * 9 7 5 11 11 H 1.48499 * 109.47414 * 210.00003 * 9 7 5 12 12 H 1.48503 * 109.47075 * 330.00250 * 9 7 5 13 13 O 1.45206 * 109.47200 * 65.00115 * 3 2 1 14 14 C 1.34224 * 117.00077 * 269.99945 * 13 3 2 15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.47581 * 180.02562 * 16 14 13 18 18 H 1.09002 * 110.75328 * 57.01153 * 17 16 14 19 19 C 1.55299 * 110.85037 * 180.71215 * 17 16 14 20 20 C 1.54947 * 100.94452 * 152.31971 * 19 17 16 21 21 O 1.43651 * 105.13582 * 323.55517 * 20 19 17 22 22 C 1.43238 * 109.96990 * 24.42434 * 21 20 19 23 23 H 1.09000 * 109.46790 * 59.99693 * 1 2 3 24 24 H 1.09001 * 109.47043 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46758 * 300.00213 * 1 2 3 26 26 H 1.08999 * 109.47012 * 240.00275 * 2 1 3 27 27 H 1.08995 * 109.47133 * 119.99982 * 2 1 3 28 28 H 0.97006 * 119.99899 * 180.02562 * 8 7 5 29 29 H 1.09009 * 109.46972 * 299.99362 * 16 14 13 30 30 H 1.08995 * 109.47473 * 59.99636 * 16 14 13 31 31 H 1.09003 * 111.12712 * 270.23642 * 19 17 16 32 32 H 1.08999 * 111.12762 * 34.40132 * 19 17 16 33 33 H 1.08995 * 110.31519 * 204.64425 * 20 19 17 34 34 H 1.09008 * 110.39522 * 82.51028 * 20 19 17 35 35 H 1.08997 * 109.83172 * 238.77529 * 22 21 20 36 36 H 1.09007 * 109.83062 * 117.80066 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1434 0.8784 -1.2280 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8800 -1.3812 10 1 6.5539 -0.3519 -0.7598 11 1 6.3836 0.9215 -2.8165 12 1 6.5576 2.0719 -0.6889 13 8 1.6559 2.0917 1.2408 14 6 0.4728 2.7254 1.2560 15 8 -0.2188 2.7377 0.2653 16 6 0.0075 3.4226 2.5084 17 6 -1.3613 4.0591 2.2593 18 1 -2.0825 3.3093 1.9341 19 6 -1.8639 4.8029 3.5266 20 6 -2.7670 5.8897 2.8911 21 8 -2.0986 6.2705 1.6779 22 6 -1.2555 5.2034 1.2283 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8293 -0.0610 -2.9500 29 1 -0.0712 2.6985 3.3194 30 1 0.7245 4.1969 2.7810 31 1 -2.4417 4.1383 4.1689 32 1 -1.0347 5.2517 4.0735 33 1 -2.8553 6.7464 3.5591 34 1 -3.7528 5.4816 2.6679 35 1 -0.2239 5.5492 1.1641 36 1 -1.5909 4.8534 0.2519 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754008681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:24 Heat of formation + Delta-G solvation = -152.721092 kcal Electronic energy + Delta-G solvation = -18036.426739 eV Core-core repulsion = 15099.145674 eV Total energy + Delta-G solvation = -2937.281066 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.04136 -38.97466 -35.91257 -33.58528 -33.39008 -31.37767 -29.99364 -27.71833 -26.71771 -23.29509 -22.58025 -21.50094 -20.19410 -19.33670 -17.12245 -16.74963 -16.63589 -15.80309 -15.39277 -15.24899 -14.67350 -14.40784 -13.49313 -13.18356 -13.12631 -12.87609 -12.30189 -11.93439 -11.74597 -11.45892 -11.40262 -11.28817 -11.15107 -10.97439 -10.84930 -10.80699 -10.64359 -10.28801 -9.81731 -9.61427 -9.46651 -9.33932 -8.82009 -8.46386 -6.19575 -4.26729 3.00196 3.23718 3.29330 3.32790 3.60386 3.90919 4.30561 4.43299 4.72400 4.84930 5.11439 5.12267 5.15900 5.29267 5.50771 5.60339 5.66234 5.76629 5.80361 5.89047 6.12697 6.19692 6.21092 6.27536 6.44393 6.85351 6.95243 7.00760 7.15203 7.25566 7.60872 7.72783 7.94606 8.15158 8.62982 8.88499 9.38708 10.87160 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.038881 B = 0.005346 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.973179 B = 5236.370530 C = 5506.013125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.357 6.357 14 C 0.449 3.551 15 O -0.516 6.516 16 C -0.108 4.108 17 C -0.108 4.108 18 H 0.094 0.906 19 C -0.153 4.153 20 C 0.051 3.949 21 O -0.389 6.389 22 C 0.058 3.942 23 H 0.053 0.947 24 H 0.032 0.968 25 H 0.031 0.969 26 H 0.108 0.892 27 H 0.041 0.959 28 H 0.266 0.734 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 5.693 10.229 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.273 6.273 14 C 0.292 3.708 15 O -0.407 6.407 16 C -0.146 4.146 17 C -0.127 4.127 18 H 0.112 0.888 19 C -0.190 4.190 20 C -0.025 4.025 21 O -0.309 6.309 22 C -0.018 4.018 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.126 0.874 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.809 5.765 9.612 14.255 hybrid contribution 0.941 -0.431 -0.134 1.044 sum -7.868 5.334 9.478 13.423 Atomic orbital electron populations 1.21853 0.98381 0.98945 1.00715 1.22019 0.92628 0.99418 1.03329 1.20668 0.94988 0.88749 0.78719 0.93495 1.21049 0.89740 1.38993 1.06229 0.91382 1.24883 0.99227 0.94765 0.95042 1.69891 1.35375 1.37814 1.09483 0.86289 0.83921 0.78671 0.77358 1.20359 1.20959 1.19637 1.86472 1.34287 1.62426 1.44141 1.23239 0.80901 0.77072 0.89608 1.90605 1.55490 1.58569 1.35986 1.21336 0.96686 1.00884 0.95695 1.22527 0.96816 0.98182 0.95128 0.88787 1.23337 1.00233 0.97940 0.97518 1.23322 0.95543 0.97479 0.86167 1.88393 1.61392 1.39896 1.41211 1.23253 0.94848 0.85701 0.97998 0.92804 0.94878 0.94995 0.87362 0.94037 0.92389 0.87963 0.88020 0.89742 0.90011 0.89979 0.92322 0.91342 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.57 37.16 0.32 -2.74 16 2 C -0.14 -3.35 5.49 -26.73 -0.15 -3.50 16 3 C 0.22 5.81 2.25 -27.88 -0.06 5.75 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.53 8.90 -34.44 -0.31 -14.84 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.98 11.29 55.43 0.63 -24.35 16 9 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 O -0.36 -8.27 9.81 -39.24 -0.38 -8.65 16 14 C 0.45 8.81 6.21 36.00 0.22 9.03 16 15 O -0.52 -11.22 12.04 -18.76 -0.23 -11.45 16 16 C -0.11 -1.48 5.21 -27.89 -0.15 -1.62 16 17 C -0.11 -1.36 2.59 -88.67 -0.23 -1.59 16 18 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 19 C -0.15 -1.44 6.62 -24.49 -0.16 -1.60 16 20 C 0.05 0.53 7.78 38.18 0.30 0.83 16 21 O -0.39 -5.56 11.36 -35.23 -0.40 -5.96 16 22 C 0.06 0.85 6.38 37.89 0.24 1.09 16 23 H 0.05 1.22 7.80 -51.93 -0.40 0.82 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 26 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.10 1.18 8.14 -51.92 -0.42 0.76 16 30 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.70 8.04 -51.93 -0.42 0.29 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 35 H 0.07 1.02 7.76 -51.93 -0.40 0.62 16 36 H 0.08 1.30 7.73 -51.93 -0.40 0.90 16 LS Contribution 292.23 15.07 4.40 4.40 Total: -1.00 -30.18 292.23 -6.61 -36.79 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.54 Total: 0.84 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -0.07 Total: -7.56 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.63 Total: -24.35 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.01 Total: -26.06 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.18 -6.61 -36.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754008681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.928 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds