Wall clock time and date at job start Mon Mar 30 2020 04:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47010 * 2 1 4 4 H 1.09001 * 109.47466 * 305.00137 * 3 2 1 5 5 C 1.50701 * 109.47176 * 184.99891 * 3 2 1 6 6 H 1.07995 * 120.00385 * 240.00219 * 5 3 2 7 7 C 1.37882 * 119.99927 * 60.00062 * 5 3 2 8 8 N 1.31512 * 119.99626 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00223 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47319 * 89.99604 * 9 7 5 11 11 H 1.48499 * 109.47414 * 210.00003 * 9 7 5 12 12 H 1.48503 * 109.47075 * 330.00250 * 9 7 5 13 13 O 1.45206 * 109.47200 * 65.00115 * 3 2 1 14 14 C 1.34224 * 117.00077 * 269.99945 * 13 3 2 15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.47581 * 180.02562 * 16 14 13 18 18 H 1.09002 * 110.75328 * 57.01153 * 17 16 14 19 19 C 1.55299 * 110.85037 * 180.71215 * 17 16 14 20 20 C 1.54947 * 100.94452 * 152.31971 * 19 17 16 21 21 O 1.43651 * 105.13582 * 323.55517 * 20 19 17 22 22 C 1.43238 * 109.96990 * 24.42434 * 21 20 19 23 23 H 1.09000 * 109.46790 * 59.99693 * 1 2 3 24 24 H 1.09001 * 109.47043 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46758 * 300.00213 * 1 2 3 26 26 H 1.08999 * 109.47012 * 240.00275 * 2 1 3 27 27 H 1.08995 * 109.47133 * 119.99982 * 2 1 3 28 28 H 0.97006 * 119.99899 * 180.02562 * 8 7 5 29 29 H 1.09009 * 109.46972 * 299.99362 * 16 14 13 30 30 H 1.08995 * 109.47473 * 59.99636 * 16 14 13 31 31 H 1.09003 * 111.12712 * 270.23642 * 19 17 16 32 32 H 1.08999 * 111.12762 * 34.40132 * 19 17 16 33 33 H 1.08995 * 110.31519 * 204.64425 * 20 19 17 34 34 H 1.09008 * 110.39522 * 82.51028 * 20 19 17 35 35 H 1.08997 * 109.83172 * 238.77529 * 22 21 20 36 36 H 1.09007 * 109.83062 * 117.80066 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1434 0.8784 -1.2280 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8800 -1.3812 10 1 6.5539 -0.3519 -0.7598 11 1 6.3836 0.9215 -2.8165 12 1 6.5576 2.0719 -0.6889 13 8 1.6559 2.0917 1.2408 14 6 0.4728 2.7254 1.2560 15 8 -0.2188 2.7377 0.2653 16 6 0.0075 3.4226 2.5084 17 6 -1.3613 4.0591 2.2593 18 1 -2.0825 3.3093 1.9341 19 6 -1.8639 4.8029 3.5266 20 6 -2.7670 5.8897 2.8911 21 8 -2.0986 6.2705 1.6779 22 6 -1.2555 5.2034 1.2283 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8293 -0.0610 -2.9500 29 1 -0.0712 2.6985 3.3194 30 1 0.7245 4.1969 2.7810 31 1 -2.4417 4.1383 4.1689 32 1 -1.0347 5.2517 4.0735 33 1 -2.8553 6.7464 3.5591 34 1 -3.7528 5.4816 2.6679 35 1 -0.2239 5.5492 1.1641 36 1 -1.5909 4.8534 0.2519 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754008681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:24 Heat of formation + Delta-G solvation = -171.142848 kcal Electronic energy + Delta-G solvation = -18037.225567 eV Core-core repulsion = 15099.145674 eV Total energy + Delta-G solvation = -2938.079893 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.52559 -40.18869 -37.66529 -35.48973 -34.60317 -33.33119 -30.93761 -29.47194 -28.16462 -25.23718 -23.64042 -22.81954 -21.71045 -20.92548 -18.85000 -18.44913 -17.93984 -17.14285 -16.92592 -16.74828 -16.24156 -15.68602 -14.87140 -14.77080 -14.68001 -14.08239 -13.74948 -13.45450 -13.32139 -13.15235 -13.04370 -12.81072 -12.65791 -12.48149 -12.23714 -12.12873 -11.91033 -11.75047 -11.71496 -11.41233 -11.16088 -10.81705 -10.53088 -10.48841 -8.27624 -6.44426 1.41025 1.42909 1.44496 1.54377 2.07387 2.42798 2.95189 3.02134 3.44450 3.72804 3.84791 4.02312 4.25105 4.35413 4.37386 4.40255 4.42796 4.56418 4.59136 4.69160 4.80132 4.85883 4.90547 4.95851 5.05864 5.09376 5.22170 5.26249 5.41293 5.52312 5.68265 6.00258 6.03686 6.17878 6.61422 7.04697 7.28386 8.78973 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.038881 B = 0.005346 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.973179 B = 5236.370530 C = 5506.013125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.005 0.995 5 C -0.551 4.551 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.266 1.266 13 O -0.367 6.367 14 C 0.439 3.561 15 O -0.542 6.542 16 C -0.096 4.096 17 C -0.105 4.105 18 H 0.086 0.914 19 C -0.137 4.137 20 C 0.040 3.960 21 O -0.411 6.411 22 C 0.058 3.942 23 H 0.033 0.967 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.270 0.730 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.600 5.796 12.509 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.023 0.977 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.190 1.190 13 O -0.284 6.284 14 C 0.284 3.716 15 O -0.434 6.434 16 C -0.133 4.133 17 C -0.124 4.124 18 H 0.104 0.896 19 C -0.174 4.174 20 C -0.035 4.035 21 O -0.331 6.331 22 C -0.019 4.019 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.153 0.847 30 H 0.140 0.860 31 H 0.131 0.869 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.788 5.876 11.913 15.927 hybrid contribution 0.831 -0.395 -0.855 1.256 sum -7.957 5.481 11.058 14.685 Atomic orbital electron populations 1.21700 0.96143 1.00525 1.00179 1.21861 0.94584 0.98129 1.02240 1.20319 0.94393 0.89294 0.78825 0.97715 1.21356 0.90730 1.39899 1.06844 0.91672 1.25792 1.04164 0.93912 0.94365 1.70017 1.37405 1.37982 1.09878 0.85230 0.77831 0.79114 0.77536 1.19177 1.20401 1.19048 1.86461 1.36410 1.63162 1.42328 1.24516 0.79411 0.76259 0.91426 1.90603 1.55828 1.59281 1.37642 1.21491 0.97314 1.01470 0.92999 1.22508 0.96118 0.97348 0.96438 0.89560 1.23332 1.00664 0.97419 0.96022 1.23642 0.95753 0.98975 0.85162 1.88371 1.61637 1.39984 1.43156 1.23121 0.94296 0.86787 0.97689 0.94758 0.92135 0.94041 0.89809 0.93551 0.92094 0.84677 0.86039 0.86936 0.88517 0.87713 0.91580 0.92287 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.57 71.98 0.62 -4.93 16 2 C -0.13 -6.52 5.49 30.60 0.17 -6.35 16 3 C 0.22 12.20 2.25 29.85 0.07 12.27 16 4 H 0.01 0.31 7.16 -2.39 -0.02 0.29 16 5 C -0.55 -31.26 8.90 25.60 0.23 -31.04 16 6 H 0.07 3.63 7.81 -2.91 -0.02 3.61 16 7 C 0.02 0.96 5.29 84.66 0.45 1.41 16 8 N -0.91 -52.56 11.29 21.45 0.24 -52.32 16 9 Si 0.98 42.91 29.54 68.60 2.03 44.94 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 13 O -0.37 -17.13 9.81 -51.35 -0.50 -17.64 16 14 C 0.44 17.19 6.21 71.23 0.44 17.64 16 15 O -0.54 -24.28 12.04 21.94 0.26 -24.02 16 16 C -0.10 -2.39 5.21 29.85 0.16 -2.23 16 17 C -0.11 -2.46 2.59 -9.53 -0.02 -2.48 16 18 H 0.09 2.16 8.05 -2.39 -0.02 2.14 16 19 C -0.14 -2.06 6.62 32.05 0.21 -1.85 16 20 C 0.04 0.73 7.78 72.65 0.56 1.29 16 21 O -0.41 -11.43 11.36 -148.98 -1.69 -13.12 16 22 C 0.06 1.69 6.38 72.45 0.46 2.15 16 23 H 0.03 1.58 7.80 -2.39 -0.02 1.56 16 24 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.04 1.68 6.06 -2.39 -0.01 1.66 16 26 H 0.08 4.62 5.95 -2.39 -0.01 4.61 16 27 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 29 H 0.14 2.57 8.14 -2.38 -0.02 2.55 16 30 H 0.12 2.63 8.07 -2.39 -0.02 2.61 16 31 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.22 8.04 -2.39 -0.02 1.20 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.06 1.79 7.76 -2.39 -0.02 1.77 16 36 H 0.05 1.77 7.73 -2.38 -0.02 1.75 16 Total: -1.00 -67.76 292.23 4.73 -63.03 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.05 Total: 13.25 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 3.34 Total: -14.12 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.24 Total: -52.32 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -1.93 Total: -54.78 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -67.76 4.73 -63.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754008681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.109 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds