Wall clock time and date at job start Mon Mar 30 2020 04:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.89306 * 2 1 4 4 O 1.20831 * 120.00037 * 264.47872 * 3 2 1 5 5 O 1.34230 * 120.00033 * 84.47985 * 3 2 1 6 6 C 1.45202 * 117.00023 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47311 * 180.02562 * 6 5 3 8 8 C 1.53001 * 109.47539 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47107 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00032 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99606 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00002 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99777 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47263 * 90.00136 * 13 11 9 15 15 H 1.48508 * 109.47202 * 209.99712 * 13 11 9 16 16 H 1.48499 * 109.47567 * 329.99886 * 13 11 9 17 17 C 1.54380 * 109.83172 * 239.06732 * 2 1 3 18 18 C 1.55305 * 102.25481 * 261.84256 * 17 2 1 19 19 C 1.54944 * 100.93982 * 325.86824 * 18 17 2 20 20 O 1.43236 * 109.82916 * 120.93417 * 2 1 3 21 21 H 1.08995 * 109.47367 * 300.51989 * 1 2 3 22 22 H 1.08999 * 109.47438 * 60.52338 * 1 2 3 23 23 H 1.09004 * 109.46766 * 180.52120 * 1 2 3 24 24 H 1.09004 * 109.47180 * 299.99940 * 6 5 3 25 25 H 1.09004 * 109.46990 * 60.00054 * 6 5 3 26 26 H 1.09004 * 109.46918 * 300.00062 * 7 6 5 27 27 H 1.09003 * 109.46949 * 59.99541 * 7 6 5 28 28 H 1.08997 * 109.46696 * 300.00111 * 8 7 6 29 29 H 1.09004 * 109.46915 * 59.99923 * 8 7 6 30 30 H 0.97000 * 119.99959 * 179.97438 * 12 11 9 31 31 H 1.08995 * 110.84695 * 143.64818 * 17 2 1 32 32 H 1.09003 * 111.02133 * 20.11276 * 17 2 1 33 33 H 1.08995 * 111.12453 * 207.94796 * 18 17 2 34 34 H 1.09001 * 111.16140 * 83.80021 * 18 17 2 35 35 H 1.08996 * 110.30897 * 277.53109 * 19 18 17 36 36 H 1.08999 * 110.39571 * 155.40414 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0428 1.4170 0.0000 4 8 2.3431 1.9509 -1.0416 5 8 2.1660 2.0862 1.1571 6 6 2.6669 3.4470 1.0815 7 6 2.7385 4.0430 2.4888 8 6 3.2656 5.4772 2.4091 9 6 3.3355 6.0644 3.7953 10 1 3.0346 5.4736 4.6478 11 6 3.7837 7.3558 3.9750 12 7 4.1507 8.0750 2.9368 13 14 3.8711 8.0834 5.6932 14 1 5.2050 7.8027 6.2824 15 1 3.6614 9.5518 5.6202 16 1 2.8165 7.4744 6.5430 17 6 2.0538 -0.7465 -1.2457 18 6 2.3682 -2.1570 -0.6768 19 6 2.8408 -1.7981 0.7545 20 8 2.0159 -0.6927 1.1558 21 1 -0.3634 0.5219 0.8852 22 1 -0.3634 0.5057 -0.8946 23 1 -0.3633 -1.0277 0.0093 24 1 3.6624 3.4437 0.6376 25 1 1.9966 4.0471 0.4660 26 1 1.7431 4.0463 2.9330 27 1 3.4089 3.4427 3.1039 28 1 4.2608 5.4742 1.9647 29 1 2.5948 6.0772 1.7941 30 1 4.4657 8.9836 3.0632 31 1 2.9571 -0.2731 -1.6303 32 1 1.2877 -0.8021 -2.0191 33 1 3.1638 -2.6407 -1.2434 34 1 1.4736 -2.7791 -0.6507 35 1 3.8900 -1.5028 0.7436 36 1 2.6933 -2.6436 1.4264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756287917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:08 Heat of formation + Delta-G solvation = -152.403308 kcal Electronic energy + Delta-G solvation = -17435.018499 eV Core-core repulsion = 14497.751213 eV Total energy + Delta-G solvation = -2937.267286 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.88834 -39.08923 -36.45308 -33.95580 -32.71716 -32.02811 -31.49171 -27.18697 -26.51183 -24.25662 -22.79160 -22.04938 -20.38638 -19.91755 -17.62861 -17.05049 -16.66744 -16.23128 -15.85023 -15.56874 -14.45055 -14.28157 -14.00528 -13.50258 -13.26172 -12.98557 -12.67576 -12.26155 -12.07934 -12.04227 -11.87044 -11.75115 -11.42983 -11.10610 -10.94516 -10.75101 -10.60139 -10.51096 -10.33821 -9.80869 -9.67906 -9.41613 -9.13204 -8.36431 -6.01294 -4.04106 2.23963 2.84795 3.32933 3.36333 3.38862 3.42897 4.11425 4.38863 4.45145 4.59701 4.69251 4.89079 4.91037 5.25758 5.34661 5.38627 5.41087 5.43660 5.50061 5.58597 5.61435 5.66340 5.74242 5.88745 6.05207 6.52767 6.58780 6.61094 6.87507 7.02705 7.63102 7.74321 7.92923 7.97464 8.38907 9.02223 9.60045 11.10240 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.049450 B = 0.003944 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.091539 B = 7098.137740 C = 7299.296484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.117 3.883 3 C 0.457 3.543 4 O -0.509 6.509 5 O -0.341 6.341 6 C 0.064 3.936 7 C -0.108 4.108 8 C 0.024 3.976 9 C -0.521 4.521 10 H 0.058 0.942 11 C 0.056 3.944 12 N -0.895 5.895 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.136 4.136 18 C -0.155 4.155 19 C 0.044 3.956 20 O -0.351 6.351 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.261 0.739 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.452 -20.744 -7.736 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.076 3.924 3 C 0.299 3.701 4 O -0.398 6.398 5 O -0.256 6.256 6 C -0.009 4.009 7 C -0.146 4.146 8 C -0.013 4.013 9 C -0.559 4.559 10 H 0.076 0.924 11 C -0.145 4.145 12 N -0.535 5.535 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.174 4.174 18 C -0.193 4.193 19 C -0.033 4.033 20 O -0.270 6.270 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.330 -20.299 -7.849 22.407 hybrid contribution 0.271 0.626 0.568 0.887 sum -5.059 -19.673 -7.281 21.579 Atomic orbital electron populations 1.22066 0.90935 1.03951 1.03889 1.21944 0.96220 0.86440 0.87766 1.23825 0.74690 0.89144 0.82429 1.90662 1.46159 1.69554 1.33445 1.86594 1.75672 1.29560 1.33749 1.23544 0.98772 0.77147 1.01424 1.21754 1.01971 0.99073 0.91793 1.19058 0.96406 0.88139 0.97732 1.21186 1.43612 0.98262 0.92833 0.92394 1.25031 0.95329 0.97140 0.96986 1.69970 1.44160 1.09812 1.29509 0.86541 0.78455 0.78205 0.84495 1.20617 1.21205 1.19786 1.23130 1.03486 0.94563 0.96173 1.23314 1.02668 0.96940 0.96340 1.23519 0.95067 0.89335 0.95346 1.88612 1.66913 1.43503 1.27966 0.90468 0.90644 0.90343 0.91613 0.91555 0.92120 0.92091 0.96268 0.96244 0.92920 0.89149 0.88744 0.89330 0.89917 0.91739 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.72 37.16 0.32 -1.19 16 2 C 0.12 1.46 1.21 -91.05 -0.11 1.35 16 3 C 0.46 7.57 6.80 36.00 0.24 7.82 16 4 O -0.51 -9.34 15.66 -18.75 -0.29 -9.63 16 5 O -0.34 -6.33 10.01 -44.17 -0.44 -6.77 16 6 C 0.06 1.26 5.47 37.16 0.20 1.47 16 7 C -0.11 -2.36 5.53 -26.73 -0.15 -2.51 16 8 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 9 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 10 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 13 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.14 -1.30 5.74 -24.79 -0.14 -1.44 16 18 C -0.16 -1.09 7.16 -24.48 -0.18 -1.27 16 19 C 0.04 0.40 7.78 38.18 0.30 0.70 16 20 O -0.35 -4.59 10.49 -48.02 -0.50 -5.10 16 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 25 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.09 0.98 7.35 -51.93 -0.38 0.60 16 32 H 0.09 0.74 7.83 -51.93 -0.41 0.33 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 305.31 15.07 4.60 4.60 Total: -1.00 -32.65 305.31 -6.80 -39.46 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -5.82 Total: -4.58 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.06 Total: -8.35 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.46 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -1.24 Total: -21.50 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.65 -6.80 -39.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756287917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.945 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds