Wall clock time and date at job start Mon Mar 30 2020 04:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.89306 * 2 1 4 4 O 1.20831 * 120.00037 * 264.47872 * 3 2 1 5 5 O 1.34230 * 120.00033 * 84.47985 * 3 2 1 6 6 C 1.45202 * 117.00023 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47311 * 180.02562 * 6 5 3 8 8 C 1.53001 * 109.47539 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47107 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00032 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99606 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00002 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99777 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47263 * 90.00136 * 13 11 9 15 15 H 1.48508 * 109.47202 * 209.99712 * 13 11 9 16 16 H 1.48499 * 109.47567 * 329.99886 * 13 11 9 17 17 C 1.54380 * 109.83172 * 239.06732 * 2 1 3 18 18 C 1.55305 * 102.25481 * 261.84256 * 17 2 1 19 19 C 1.54944 * 100.93982 * 325.86824 * 18 17 2 20 20 O 1.43236 * 109.82916 * 120.93417 * 2 1 3 21 21 H 1.08995 * 109.47367 * 300.51989 * 1 2 3 22 22 H 1.08999 * 109.47438 * 60.52338 * 1 2 3 23 23 H 1.09004 * 109.46766 * 180.52120 * 1 2 3 24 24 H 1.09004 * 109.47180 * 299.99940 * 6 5 3 25 25 H 1.09004 * 109.46990 * 60.00054 * 6 5 3 26 26 H 1.09004 * 109.46918 * 300.00062 * 7 6 5 27 27 H 1.09003 * 109.46949 * 59.99541 * 7 6 5 28 28 H 1.08997 * 109.46696 * 300.00111 * 8 7 6 29 29 H 1.09004 * 109.46915 * 59.99923 * 8 7 6 30 30 H 0.97000 * 119.99959 * 179.97438 * 12 11 9 31 31 H 1.08995 * 110.84695 * 143.64818 * 17 2 1 32 32 H 1.09003 * 111.02133 * 20.11276 * 17 2 1 33 33 H 1.08995 * 111.12453 * 207.94796 * 18 17 2 34 34 H 1.09001 * 111.16140 * 83.80021 * 18 17 2 35 35 H 1.08996 * 110.30897 * 277.53109 * 19 18 17 36 36 H 1.08999 * 110.39571 * 155.40414 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0428 1.4170 0.0000 4 8 2.3431 1.9509 -1.0416 5 8 2.1660 2.0862 1.1571 6 6 2.6669 3.4470 1.0815 7 6 2.7385 4.0430 2.4888 8 6 3.2656 5.4772 2.4091 9 6 3.3355 6.0644 3.7953 10 1 3.0346 5.4736 4.6478 11 6 3.7837 7.3558 3.9750 12 7 4.1507 8.0750 2.9368 13 14 3.8711 8.0834 5.6932 14 1 5.2050 7.8027 6.2824 15 1 3.6614 9.5518 5.6202 16 1 2.8165 7.4744 6.5430 17 6 2.0538 -0.7465 -1.2457 18 6 2.3682 -2.1570 -0.6768 19 6 2.8408 -1.7981 0.7545 20 8 2.0159 -0.6927 1.1558 21 1 -0.3634 0.5219 0.8852 22 1 -0.3634 0.5057 -0.8946 23 1 -0.3633 -1.0277 0.0093 24 1 3.6624 3.4437 0.6376 25 1 1.9966 4.0471 0.4660 26 1 1.7431 4.0463 2.9330 27 1 3.4089 3.4427 3.1039 28 1 4.2608 5.4742 1.9647 29 1 2.5948 6.0772 1.7941 30 1 4.4657 8.9836 3.0632 31 1 2.9571 -0.2731 -1.6303 32 1 1.2877 -0.8021 -2.0191 33 1 3.1638 -2.6407 -1.2434 34 1 1.4736 -2.7791 -0.6507 35 1 3.8900 -1.5028 0.7436 36 1 2.6933 -2.6436 1.4264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756287917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:08 Heat of formation + Delta-G solvation = -172.103044 kcal Electronic energy + Delta-G solvation = -17435.872743 eV Core-core repulsion = 14497.751213 eV Total energy + Delta-G solvation = -2938.121530 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.05427 -40.16936 -37.92365 -35.97283 -33.76949 -33.54781 -32.57856 -29.10635 -27.30634 -25.81775 -24.27327 -22.83790 -22.21587 -21.12733 -18.90947 -18.58166 -17.95694 -17.85349 -17.05905 -16.53219 -16.47050 -15.67461 -15.17226 -14.70222 -14.26848 -14.12722 -13.94780 -13.81096 -13.64196 -13.33719 -12.86902 -12.80878 -12.76782 -12.53335 -12.42394 -12.12374 -12.07837 -11.88030 -11.77668 -11.49711 -11.46304 -11.27254 -10.67472 -10.59011 -8.23343 -6.35284 0.94050 1.40503 1.42469 1.52909 1.57248 2.40488 2.55067 3.10343 3.32636 3.53746 3.63599 3.92279 3.98681 4.00041 4.04865 4.27951 4.34528 4.55863 4.67906 4.70514 4.74242 4.76685 4.83677 4.86879 4.97265 5.02824 5.09286 5.18574 5.34599 5.46721 5.59782 5.77391 5.79466 6.17040 6.57501 6.79998 7.34292 8.89022 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.049450 B = 0.003944 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.091539 B = 7098.137740 C = 7299.296484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.116 3.884 3 C 0.449 3.551 4 O -0.532 6.532 5 O -0.349 6.349 6 C 0.073 3.927 7 C -0.093 4.093 8 C 0.027 3.973 9 C -0.545 4.545 10 H 0.064 0.936 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.971 3.029 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.262 1.262 17 C -0.136 4.136 18 C -0.140 4.140 19 C 0.031 3.969 20 O -0.376 6.376 21 H 0.063 0.937 22 H 0.083 0.917 23 H 0.108 0.892 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.063 0.937 28 H -0.003 1.003 29 H -0.002 1.002 30 H 0.265 0.735 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.056 0.944 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.221 -22.641 -7.191 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.075 3.925 3 C 0.293 3.707 4 O -0.422 6.422 5 O -0.265 6.265 6 C 0.000 4.000 7 C -0.131 4.131 8 C -0.010 4.010 9 C -0.583 4.583 10 H 0.082 0.918 11 C -0.198 4.198 12 N -0.573 5.573 13 Si 0.795 3.205 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.186 1.186 17 C -0.174 4.174 18 C -0.177 4.177 19 C -0.045 4.045 20 O -0.296 6.296 21 H 0.082 0.918 22 H 0.102 0.898 23 H 0.127 0.873 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.015 0.985 29 H 0.017 0.983 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.102 -22.226 -7.308 24.179 hybrid contribution 0.534 1.176 0.347 1.337 sum -5.568 -21.050 -6.961 22.860 Atomic orbital electron populations 1.22111 0.88958 1.05825 1.03647 1.22232 0.97532 0.83668 0.89097 1.24981 0.73770 0.90623 0.81343 1.90640 1.47154 1.70468 1.33945 1.86593 1.75915 1.28669 1.35319 1.23189 0.98662 0.78348 0.99836 1.21453 1.01913 0.96456 0.93252 1.18934 0.94864 0.90685 0.96554 1.21614 1.43906 0.98987 0.93820 0.91773 1.26020 0.94608 0.97571 1.01636 1.70101 1.44834 1.10308 1.32097 0.85362 0.78975 0.77324 0.78880 1.19663 1.20625 1.18582 1.23196 1.03215 0.95525 0.95437 1.23323 1.04268 0.95584 0.94521 1.23807 0.94296 0.88899 0.97472 1.88588 1.67481 1.44678 1.28858 0.91830 0.89841 0.87334 0.92090 0.91694 0.91559 0.91786 0.98491 0.98339 0.92605 0.91042 0.86629 0.87355 0.87629 0.92546 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.72 71.98 0.63 -2.06 16 2 C 0.12 2.73 1.21 -11.07 -0.01 2.72 16 3 C 0.45 14.93 6.80 71.23 0.48 15.41 16 4 O -0.53 -19.77 15.66 21.95 0.34 -19.43 16 5 O -0.35 -13.14 10.01 -46.72 -0.47 -13.61 16 6 C 0.07 2.95 5.47 71.98 0.39 3.35 16 7 C -0.09 -4.14 5.53 30.59 0.17 -3.97 16 8 C 0.03 1.46 4.97 29.85 0.15 1.61 16 9 C -0.55 -31.71 9.11 25.60 0.23 -31.48 16 10 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 11 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 12 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 13 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 16 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 17 C -0.14 -2.32 5.74 31.85 0.18 -2.14 16 18 C -0.14 -1.51 7.16 32.05 0.23 -1.28 16 19 C 0.03 0.50 7.78 72.65 0.56 1.07 16 20 O -0.38 -9.37 10.49 -136.75 -1.43 -10.81 16 21 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 2.49 8.13 -2.38 -0.02 2.47 16 25 H 0.06 2.61 8.13 -2.38 -0.02 2.59 16 26 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 27 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 30 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.07 1.49 7.35 -2.39 -0.02 1.48 16 32 H 0.12 1.46 7.83 -2.39 -0.02 1.44 16 33 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -71.09 305.31 5.27 -65.81 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.04 Total: 4.94 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 3.48 Total: -16.33 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.28 Total: -57.29 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -1.56 Total: -43.84 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.09 5.27 -65.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756287917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.291 kcal (2) G-P(sol) polarization free energy of solvation -71.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds