Wall clock time and date at job start Mon Mar 30 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47134 * 2 1 4 4 C 1.50696 * 109.47185 * 239.99741 * 2 1 3 5 5 H 1.08005 * 119.99938 * 240.00255 * 4 2 1 6 6 C 1.37872 * 119.99944 * 60.00060 * 4 2 1 7 7 N 1.31522 * 120.00196 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00124 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47232 * 60.00322 * 8 6 4 10 10 H 1.48500 * 109.47415 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47259 * 300.00268 * 8 6 4 12 12 C 1.53001 * 109.47073 * 119.99910 * 2 1 3 13 13 O 1.45208 * 109.46826 * 300.00231 * 12 2 1 14 14 C 1.34236 * 116.99488 * 180.02562 * 13 12 2 15 15 O 1.20816 * 120.00230 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99596 * 179.97438 * 14 13 12 17 17 C 1.52996 * 113.08199 * 311.90460 * 16 14 13 18 18 C 1.54038 * 113.81818 * 83.81045 * 16 14 13 19 19 O 1.44178 * 85.51698 * 136.80343 * 18 16 14 20 20 C 1.44176 * 93.34170 * 335.80761 * 19 18 16 21 21 H 1.09002 * 109.46591 * 300.00181 * 1 2 3 22 22 H 1.08995 * 109.47038 * 59.99824 * 1 2 3 23 23 H 1.08999 * 109.47023 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46694 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.46879 * 299.99684 * 3 2 1 26 26 H 1.08997 * 109.46880 * 60.00118 * 3 2 1 27 27 H 0.96997 * 119.99701 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47277 * 180.02562 * 12 2 1 29 29 H 1.08997 * 109.47074 * 59.99420 * 12 2 1 30 30 H 1.09008 * 109.47369 * 288.09416 * 17 16 14 31 31 H 1.08999 * 109.47635 * 48.09281 * 17 16 14 32 32 H 1.09005 * 109.47251 * 168.09577 * 17 16 14 33 33 H 1.08997 * 113.86481 * 250.95169 * 18 16 14 34 34 H 1.09002 * 113.86144 * 22.65328 * 18 16 14 35 35 H 1.08997 * 113.86615 * 270.04970 * 20 19 18 36 36 H 1.09002 * 113.98709 * 138.35466 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8281 -2.5199 -4.0081 10 1 1.8270 -0.4201 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0367 2.4348 14 6 1.9171 -0.5465 3.6229 15 8 2.6141 -1.5322 3.6707 16 6 1.4530 0.1108 4.8972 17 6 1.6645 1.6260 4.9021 18 6 0.0434 -0.3219 5.3427 19 8 0.6082 -0.3972 6.6671 20 6 1.9497 -0.5907 6.1755 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1301 1.4425 -0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 0.7096 1.1617 -3.4844 28 1 3.1300 -0.7209 1.2495 29 1 1.6766 -1.7488 1.2493 30 1 2.7282 1.8442 4.9981 31 1 1.2899 2.0483 3.9696 32 1 1.1263 2.0654 5.7420 33 1 -0.7128 0.4549 5.2293 34 1 -0.2695 -1.2858 4.9412 35 1 2.2188 -1.6366 6.0283 36 1 2.7071 -0.0281 6.7213 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764834804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:07 Heat of formation + Delta-G solvation = -109.351940 kcal Electronic energy + Delta-G solvation = -18206.717199 eV Core-core repulsion = 15271.316760 eV Total energy + Delta-G solvation = -2935.400438 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.26094 -39.30071 -36.57414 -34.89699 -32.36177 -31.22616 -26.82738 -26.52421 -25.88398 -25.65598 -25.16485 -22.63060 -19.23117 -18.87217 -17.62097 -16.55002 -16.35481 -15.98130 -15.72028 -15.40244 -14.82957 -13.84939 -13.65961 -13.13282 -13.01090 -12.65532 -12.44952 -12.20609 -11.88214 -11.55452 -11.40825 -11.20349 -11.00443 -10.96366 -10.76472 -10.44881 -10.24911 -10.09563 -9.94552 -9.79301 -9.45392 -9.32026 -8.80026 -8.40212 -6.04746 -4.16640 2.40727 3.09235 3.27541 3.32176 3.35978 3.42757 3.94936 4.35795 4.64227 4.86558 5.07460 5.18819 5.21633 5.32462 5.59895 5.61333 5.63846 5.81509 5.90447 6.03434 6.05379 6.08913 6.42262 6.70306 6.94392 6.99825 7.09713 7.10770 7.36036 7.58499 7.66934 8.01645 8.08748 8.18010 8.35883 8.82978 9.49056 10.96410 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.049369 B = 0.005384 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.020944 B = 5199.373827 C = 5372.859008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 C -0.129 4.129 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.083 3.917 13 O -0.342 6.342 14 C 0.462 3.538 15 O -0.516 6.516 16 C -0.131 4.131 17 C -0.128 4.128 18 C 0.060 3.940 19 O -0.375 6.375 20 C 0.059 3.941 21 H 0.016 0.984 22 H 0.084 0.916 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.084 0.916 26 H 0.016 0.984 27 H 0.262 0.738 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.614 1.302 12.716 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 C -0.187 4.187 4 C -0.552 4.552 5 H 0.074 0.926 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.010 3.990 13 O -0.257 6.257 14 C 0.304 3.696 15 O -0.406 6.406 16 C -0.132 4.132 17 C -0.185 4.185 18 C -0.017 4.017 19 O -0.294 6.294 20 C -0.017 4.017 21 H 0.035 0.965 22 H 0.103 0.897 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.103 0.897 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.605 1.153 12.777 12.843 hybrid contribution 0.591 -0.701 -1.166 1.484 sum -0.014 0.452 11.610 11.619 Atomic orbital electron populations 1.21771 0.97302 0.98947 1.00686 1.18242 0.93432 0.93074 0.88241 1.21769 0.98074 0.98174 1.00673 1.20894 1.32102 1.12341 0.89832 0.92590 1.24852 0.94761 0.94902 0.98777 1.69818 1.36250 1.22511 1.23447 0.86595 0.79224 0.79757 0.82058 1.20243 1.21174 1.20239 1.23716 0.98211 0.95824 0.81250 1.86531 1.68806 1.55590 1.14801 1.23313 0.77506 0.82463 0.86290 1.90619 1.35811 1.25931 1.88245 1.23852 0.98659 0.99545 0.91142 1.21593 1.02997 0.89707 1.04175 1.23994 0.94121 1.02011 0.81591 1.89682 1.20368 1.93943 1.25414 1.24080 0.86541 1.01327 0.89778 0.96460 0.89708 0.95845 0.95848 0.89710 0.96469 0.92815 0.92530 0.92546 0.91389 0.89932 0.90701 0.87580 0.89508 0.88540 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 2 C 0.07 1.70 0.58 -155.66 -0.09 1.61 16 3 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 4 C -0.51 -13.60 8.01 -34.44 -0.28 -13.88 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 6 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 7 N -0.88 -23.70 9.35 55.43 0.52 -23.19 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 C 0.08 1.81 4.26 37.16 0.16 1.97 16 13 O -0.34 -6.63 8.49 -39.27 -0.33 -6.97 16 14 C 0.46 7.97 7.06 36.01 0.25 8.22 16 15 O -0.52 -10.11 15.64 -18.74 -0.29 -10.41 16 16 C -0.13 -1.70 1.38 -154.58 -0.21 -1.91 16 17 C -0.13 -1.41 9.11 37.16 0.34 -1.07 16 18 C 0.06 0.70 8.30 37.61 0.31 1.01 16 19 O -0.38 -4.77 12.39 -35.23 -0.44 -5.21 16 20 C 0.06 0.70 8.15 37.61 0.31 1.01 16 21 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 22 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 26 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 27 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 29 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 30 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.08 0.99 7.84 -51.93 -0.41 0.58 16 32 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 33 H 0.11 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 35 H 0.10 1.20 7.40 -51.93 -0.38 0.81 16 36 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 296.76 15.07 4.47 4.47 Total: -1.00 -28.48 296.76 -5.34 -33.82 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.55 Total: -1.34 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 1.30 Total: -6.82 kcal Atomic # 7 Polarization: -23.70 SS G_CDS: 0.52 Total: -23.19 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -1.06 Total: -22.58 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.48 -5.34 -33.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764834804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.529 kcal (2) G-P(sol) polarization free energy of solvation -28.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds