Wall clock time and date at job start Mon Mar 30 2020 04:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47134 * 2 1 4 4 C 1.50696 * 109.47185 * 239.99741 * 2 1 3 5 5 H 1.08005 * 119.99938 * 240.00255 * 4 2 1 6 6 C 1.37872 * 119.99944 * 60.00060 * 4 2 1 7 7 N 1.31522 * 120.00196 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00124 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47232 * 60.00322 * 8 6 4 10 10 H 1.48500 * 109.47415 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47259 * 300.00268 * 8 6 4 12 12 C 1.53001 * 109.47073 * 119.99910 * 2 1 3 13 13 O 1.45208 * 109.46826 * 300.00231 * 12 2 1 14 14 C 1.34236 * 116.99488 * 180.02562 * 13 12 2 15 15 O 1.20816 * 120.00230 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99596 * 179.97438 * 14 13 12 17 17 C 1.52996 * 113.08199 * 311.90460 * 16 14 13 18 18 C 1.54038 * 113.81818 * 83.81045 * 16 14 13 19 19 O 1.44178 * 85.51698 * 136.80343 * 18 16 14 20 20 C 1.44176 * 93.34170 * 335.80761 * 19 18 16 21 21 H 1.09002 * 109.46591 * 300.00181 * 1 2 3 22 22 H 1.08995 * 109.47038 * 59.99824 * 1 2 3 23 23 H 1.08999 * 109.47023 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46694 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.46879 * 299.99684 * 3 2 1 26 26 H 1.08997 * 109.46880 * 60.00118 * 3 2 1 27 27 H 0.96997 * 119.99701 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47277 * 180.02562 * 12 2 1 29 29 H 1.08997 * 109.47074 * 59.99420 * 12 2 1 30 30 H 1.09008 * 109.47369 * 288.09416 * 17 16 14 31 31 H 1.08999 * 109.47635 * 48.09281 * 17 16 14 32 32 H 1.09005 * 109.47251 * 168.09577 * 17 16 14 33 33 H 1.08997 * 113.86481 * 250.95169 * 18 16 14 34 34 H 1.09002 * 113.86144 * 22.65328 * 18 16 14 35 35 H 1.08997 * 113.86615 * 270.04970 * 20 19 18 36 36 H 1.09002 * 113.98709 * 138.35466 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8281 -2.5199 -4.0081 10 1 1.8270 -0.4201 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0367 2.4348 14 6 1.9171 -0.5465 3.6229 15 8 2.6141 -1.5322 3.6707 16 6 1.4530 0.1108 4.8972 17 6 1.6645 1.6260 4.9021 18 6 0.0434 -0.3219 5.3427 19 8 0.6082 -0.3972 6.6671 20 6 1.9497 -0.5907 6.1755 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1301 1.4425 -0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 0.7096 1.1617 -3.4844 28 1 3.1300 -0.7209 1.2495 29 1 1.6766 -1.7488 1.2493 30 1 2.7282 1.8442 4.9981 31 1 1.2899 2.0483 3.9696 32 1 1.1263 2.0654 5.7420 33 1 -0.7128 0.4549 5.2293 34 1 -0.2695 -1.2858 4.9412 35 1 2.2188 -1.6366 6.0283 36 1 2.7071 -0.0281 6.7213 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764834804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:06 Heat of formation + Delta-G solvation = -125.552218 kcal Electronic energy + Delta-G solvation = -18207.419695 eV Core-core repulsion = 15271.316760 eV Total energy + Delta-G solvation = -2936.102935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.39698 -40.64837 -38.24880 -36.64287 -33.54307 -33.03134 -27.87396 -27.60518 -27.57645 -27.38744 -27.08600 -24.00598 -20.80365 -20.39786 -18.82287 -17.94234 -17.79776 -17.57945 -16.91643 -16.71627 -16.63033 -15.30083 -14.90340 -14.81625 -14.51937 -14.13005 -13.49207 -13.43489 -13.34681 -13.07601 -13.05428 -12.83081 -12.67069 -12.51843 -12.33186 -12.14102 -11.95553 -11.74121 -11.48604 -11.29443 -11.13424 -10.78133 -10.73797 -10.40495 -8.05134 -6.23406 1.05003 1.44361 1.44654 1.51596 1.72298 2.44402 2.47975 2.95066 3.18305 3.64264 3.74722 3.98189 4.24544 4.24682 4.26263 4.49763 4.58631 4.71910 4.73962 4.75323 4.85399 4.91595 4.97528 5.04383 5.18193 5.21580 5.24708 5.36117 5.55876 5.63594 5.64601 6.07866 6.17284 6.36460 6.67558 6.81686 7.44703 8.94156 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.049369 B = 0.005384 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.020944 B = 5199.373827 C = 5372.859008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.061 3.939 3 C -0.118 4.118 4 C -0.536 4.536 5 H 0.048 0.952 6 C 0.030 3.970 7 N -0.899 5.899 8 Si 0.951 3.049 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.275 1.275 12 C 0.095 3.905 13 O -0.345 6.345 14 C 0.460 3.540 15 O -0.543 6.543 16 C -0.130 4.130 17 C -0.124 4.124 18 C 0.060 3.940 19 O -0.382 6.382 20 C 0.062 3.938 21 H 0.034 0.966 22 H 0.063 0.937 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.732 1.748 13.765 13.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.061 3.939 3 C -0.176 4.176 4 C -0.574 4.574 5 H 0.066 0.934 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.201 1.201 12 C 0.022 3.978 13 O -0.260 6.260 14 C 0.304 3.696 15 O -0.433 6.433 16 C -0.132 4.132 17 C -0.181 4.181 18 C -0.016 4.016 19 O -0.301 6.301 20 C -0.014 4.014 21 H 0.053 0.947 22 H 0.082 0.918 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.727 1.603 13.841 13.952 hybrid contribution 0.623 -0.849 -1.430 1.776 sum -0.104 0.754 12.411 12.434 Atomic orbital electron populations 1.21621 0.96990 0.98590 1.00425 1.18265 0.93701 0.93304 0.88649 1.21618 0.97702 0.97862 1.00420 1.21172 1.32456 1.12525 0.91258 0.93391 1.25489 0.94944 0.95547 1.01099 1.69928 1.36619 1.23180 1.23924 0.85725 0.78664 0.78750 0.79137 1.20073 1.20639 1.20052 1.23274 0.97487 0.95196 0.81862 1.86526 1.68995 1.55501 1.14967 1.24254 0.76618 0.82129 0.86570 1.90607 1.37048 1.27232 1.88454 1.24134 0.99709 1.00687 0.88634 1.21629 1.03894 0.87965 1.04631 1.24153 0.93897 1.02664 0.80912 1.89686 1.20731 1.93937 1.25704 1.24180 0.86934 1.01117 0.89196 0.94664 0.91838 0.96197 0.96217 0.91842 0.94656 0.92798 0.93357 0.93359 0.90646 0.90911 0.88404 0.85246 0.89844 0.89544 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.11 71.98 0.58 -4.98 16 2 C 0.06 2.95 0.58 -52.93 -0.03 2.92 16 3 C -0.12 -5.56 8.11 71.98 0.58 -4.97 16 4 C -0.54 -28.54 8.01 25.60 0.21 -28.34 16 5 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 6 C 0.03 1.55 5.15 84.65 0.44 1.99 16 7 N -0.90 -48.35 9.35 21.45 0.20 -48.15 16 8 Si 0.95 42.23 29.54 68.60 2.03 44.26 16 9 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 12 C 0.10 4.16 4.26 71.98 0.31 4.47 16 13 O -0.34 -13.02 8.49 -51.47 -0.44 -13.46 16 14 C 0.46 15.38 7.06 71.24 0.50 15.88 16 15 O -0.54 -21.03 15.64 21.99 0.34 -20.68 16 16 C -0.13 -3.11 1.38 -52.23 -0.07 -3.18 16 17 C -0.12 -2.39 9.11 71.98 0.66 -1.74 16 18 C 0.06 1.28 8.30 72.28 0.60 1.88 16 19 O -0.38 -8.69 12.39 -148.98 -1.85 -10.54 16 20 C 0.06 1.33 8.15 72.27 0.59 1.92 16 21 H 0.03 1.47 7.68 -2.39 -0.02 1.45 16 22 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 23 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 26 H 0.03 1.48 7.68 -2.39 -0.02 1.46 16 27 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 28 H 0.05 2.16 8.13 -2.39 -0.02 2.14 16 29 H 0.05 2.15 8.13 -2.39 -0.02 2.14 16 30 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 1.57 7.84 -2.39 -0.02 1.55 16 32 H 0.10 1.46 8.04 -2.38 -0.02 1.44 16 33 H 0.13 2.13 8.10 -2.39 -0.02 2.11 16 34 H 0.08 1.82 8.09 -2.39 -0.02 1.80 16 35 H 0.09 2.04 7.40 -2.39 -0.02 2.02 16 36 H 0.13 2.02 8.10 -2.39 -0.02 2.00 16 Total: -1.00 -59.66 296.76 5.70 -53.96 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.05 Total: 8.77 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 4.36 Total: -14.16 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.20 Total: -48.15 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -1.94 Total: -44.68 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -59.66 5.70 -53.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764834804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.589 kcal (2) G-P(sol) polarization free energy of solvation -59.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds