Wall clock time and date at job start Mon Mar 30 2020 04:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.82404 * 2 1 4 4 C 1.54376 * 109.83552 * 239.01779 * 2 1 3 5 5 C 1.55304 * 102.25478 * 261.84430 * 4 2 1 6 6 C 1.54947 * 100.94189 * 325.86567 * 5 4 2 7 7 H 1.08998 * 110.30770 * 277.52939 * 6 5 4 8 8 C 1.50701 * 110.30742 * 155.45795 * 6 5 4 9 9 O 1.20830 * 119.99748 * 244.99638 * 8 6 5 10 10 O 1.34231 * 120.00282 * 65.00357 * 8 6 5 11 11 C 1.45197 * 117.00156 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.47224 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47353 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99661 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00133 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00125 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47312 * 89.99800 * 17 15 13 19 19 H 1.48497 * 109.46944 * 209.99428 * 17 15 13 20 20 H 1.48497 * 109.47080 * 329.99335 * 17 15 13 21 21 O 1.43240 * 109.82656 * 120.88571 * 2 1 3 22 22 H 1.08997 * 109.47677 * 300.56765 * 1 2 3 23 23 H 1.09003 * 109.47100 * 60.57227 * 1 2 3 24 24 H 1.09007 * 109.47043 * 180.56494 * 1 2 3 25 25 H 1.08995 * 109.47359 * 179.42822 * 3 2 1 26 26 H 1.08998 * 109.46935 * 299.43160 * 3 2 1 27 27 H 1.09006 * 109.46940 * 59.43194 * 3 2 1 28 28 H 1.08992 * 110.85097 * 143.65439 * 4 2 1 29 29 H 1.09006 * 110.84744 * 20.03399 * 4 2 1 30 30 H 1.08995 * 111.12638 * 207.94081 * 5 4 2 31 31 H 1.09009 * 111.12563 * 83.78218 * 5 4 2 32 32 H 1.08996 * 109.47279 * 299.99883 * 11 10 8 33 33 H 1.09004 * 109.47025 * 59.99628 * 11 10 8 34 34 H 1.09006 * 109.47016 * 300.00224 * 12 11 10 35 35 H 1.09005 * 109.46778 * 59.99734 * 12 11 10 36 36 H 0.97001 * 120.00413 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4393 0.0000 4 6 2.0538 -0.7475 -1.2450 5 6 2.3682 -2.1575 -0.6749 6 6 2.8407 -1.7975 0.7562 7 1 3.8899 -1.5023 0.7451 8 6 2.6371 -2.9674 1.6841 9 8 1.8518 -2.8836 2.5985 10 8 3.3283 -4.1024 1.4948 11 6 3.0818 -5.1876 2.4273 12 6 3.9532 -6.3886 2.0542 13 6 3.6968 -7.5152 3.0216 14 1 2.9833 -7.3876 3.8223 15 6 4.3731 -8.7089 2.8846 16 7 5.2415 -8.8645 1.9093 17 14 4.0547 -10.1056 4.0834 18 1 2.9519 -10.9573 3.5697 19 1 5.2855 -10.9238 4.2283 20 1 3.6737 -9.5463 5.4052 21 8 2.0158 -0.6917 1.1564 22 1 -0.3634 0.5226 0.8848 23 1 -0.3633 0.5049 -0.8951 24 1 -0.3633 -1.0277 0.0101 25 1 3.1387 1.4327 0.0103 26 1 1.6970 1.9523 -0.8950 27 1 1.6803 1.9584 0.8849 28 1 2.9571 -0.2746 -1.6299 29 1 1.2851 -0.8034 -2.0159 30 1 3.1637 -2.6418 -1.2411 31 1 1.4730 -2.7791 -0.6482 32 1 3.3263 -4.8609 3.4380 33 1 2.0309 -5.4737 2.3823 34 1 3.7082 -6.7152 1.0435 35 1 5.0041 -6.1028 2.0989 36 1 5.7170 -9.7044 1.8127 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785250275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:33 Heat of formation + Delta-G solvation = -151.548673 kcal Electronic energy + Delta-G solvation = -17486.833142 eV Core-core repulsion = 14549.602916 eV Total energy + Delta-G solvation = -2937.230226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.58699 -39.22011 -36.03056 -33.44500 -33.33581 -32.24657 -30.27547 -27.56666 -27.20326 -24.85601 -22.71202 -21.25411 -20.58455 -20.04981 -17.63430 -16.70700 -16.41120 -15.91985 -15.69667 -15.32672 -14.55399 -14.18633 -13.88951 -13.52823 -13.28425 -12.87727 -12.60537 -12.36346 -12.28961 -12.03515 -11.86903 -11.73489 -11.23698 -11.03779 -11.01117 -10.84238 -10.74810 -10.67303 -10.21565 -9.82765 -9.64619 -9.49808 -9.28245 -8.44859 -6.10989 -4.15319 2.53456 2.76541 3.28554 3.34556 3.38882 3.79951 4.24189 4.38947 4.51878 4.61348 4.84430 4.89882 4.92522 5.25673 5.27718 5.33481 5.36389 5.45698 5.50719 5.62621 5.67619 5.75766 5.84092 5.94785 6.08798 6.09526 6.10106 6.62815 6.84102 6.97864 7.55462 7.61390 7.86524 8.19591 8.27440 8.90159 9.49165 11.00506 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.060677 B = 0.004000 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.351070 B = 6998.789950 C = 7189.276267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.096 3.904 3 C -0.153 4.153 4 C -0.145 4.145 5 C -0.142 4.142 6 C 0.091 3.909 7 H 0.108 0.892 8 C 0.453 3.547 9 O -0.499 6.499 10 O -0.355 6.355 11 C 0.075 3.925 12 C 0.025 3.975 13 C -0.527 4.527 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 O -0.346 6.346 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.029 0.971 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.523 17.781 -8.215 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.057 3.943 3 C -0.210 4.210 4 C -0.183 4.183 5 C -0.179 4.179 6 C 0.032 3.968 7 H 0.126 0.874 8 C 0.294 3.706 9 O -0.387 6.387 10 O -0.271 6.271 11 C 0.003 3.997 12 C -0.012 4.012 13 C -0.565 4.565 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 O -0.265 6.265 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.677 17.691 -7.783 20.144 hybrid contribution -0.139 -0.933 0.610 1.123 sum -5.816 16.759 -7.173 19.135 Atomic orbital electron populations 1.22082 0.93774 1.02887 1.02304 1.22202 0.94542 0.92561 0.84964 1.22091 1.01662 0.94761 1.02488 1.23244 1.02432 0.94857 0.97720 1.23205 1.03453 0.97818 0.93461 1.22330 0.97149 0.85046 0.92316 0.87419 1.23290 0.78657 0.84366 0.84312 1.90644 1.34238 1.82588 1.31183 1.86496 1.61655 1.22797 1.56193 1.23674 1.01326 0.84264 0.90426 1.19173 0.95027 0.88856 0.98139 1.20985 1.24435 0.97606 1.13463 0.92240 1.24977 0.94822 0.98619 0.95706 1.69971 1.26030 1.25808 1.31057 0.86465 0.77744 0.81774 0.81300 1.20475 1.21042 1.19698 1.88553 1.67099 1.41150 1.29700 0.91739 0.91479 0.91954 0.91985 0.91359 0.91747 0.89831 0.89410 0.88098 0.89718 0.92244 0.92306 0.95334 0.95297 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.73 37.16 0.32 -1.15 16 2 C 0.10 1.00 1.27 -89.90 -0.11 0.89 16 3 C -0.15 -1.27 8.75 37.16 0.33 -0.94 16 4 C -0.15 -1.23 6.09 -24.79 -0.15 -1.38 16 5 C -0.14 -1.56 6.56 -24.48 -0.16 -1.72 16 6 C 0.09 1.27 3.97 -26.85 -0.11 1.16 16 7 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 8 C 0.45 8.45 7.31 36.01 0.26 8.72 16 9 O -0.50 -10.91 16.30 -25.31 -0.41 -11.32 16 10 O -0.35 -7.21 10.22 -39.26 -0.40 -7.61 16 11 C 0.08 1.72 5.40 37.16 0.20 1.92 16 12 C 0.03 0.66 5.35 -27.88 -0.15 0.51 16 13 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 14 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 17 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 O -0.35 -5.04 9.93 -54.58 -0.54 -5.58 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 29 H 0.09 0.61 7.82 -51.93 -0.41 0.20 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.00 8.05 -51.92 -0.42 0.58 16 32 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 33 H 0.06 1.33 8.13 -51.93 -0.42 0.90 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 306.05 15.07 4.61 4.61 Total: -1.00 -32.35 306.05 -6.85 -39.21 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -5.85 Total: -4.54 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 0.02 Total: -5.59 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.74 Total: -25.62 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -1.36 Total: -24.51 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.35 -6.85 -39.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785250275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.344 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds