Wall clock time and date at job start Mon Mar 30 2020 04:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.82404 * 2 1 4 4 C 1.54376 * 109.83552 * 239.01779 * 2 1 3 5 5 C 1.55304 * 102.25478 * 261.84430 * 4 2 1 6 6 C 1.54947 * 100.94189 * 325.86567 * 5 4 2 7 7 H 1.08998 * 110.30770 * 277.52939 * 6 5 4 8 8 C 1.50701 * 110.30742 * 155.45795 * 6 5 4 9 9 O 1.20830 * 119.99748 * 244.99638 * 8 6 5 10 10 O 1.34231 * 120.00282 * 65.00357 * 8 6 5 11 11 C 1.45197 * 117.00156 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.47224 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47353 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99661 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00133 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00125 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47312 * 89.99800 * 17 15 13 19 19 H 1.48497 * 109.46944 * 209.99428 * 17 15 13 20 20 H 1.48497 * 109.47080 * 329.99335 * 17 15 13 21 21 O 1.43240 * 109.82656 * 120.88571 * 2 1 3 22 22 H 1.08997 * 109.47677 * 300.56765 * 1 2 3 23 23 H 1.09003 * 109.47100 * 60.57227 * 1 2 3 24 24 H 1.09007 * 109.47043 * 180.56494 * 1 2 3 25 25 H 1.08995 * 109.47359 * 179.42822 * 3 2 1 26 26 H 1.08998 * 109.46935 * 299.43160 * 3 2 1 27 27 H 1.09006 * 109.46940 * 59.43194 * 3 2 1 28 28 H 1.08992 * 110.85097 * 143.65439 * 4 2 1 29 29 H 1.09006 * 110.84744 * 20.03399 * 4 2 1 30 30 H 1.08995 * 111.12638 * 207.94081 * 5 4 2 31 31 H 1.09009 * 111.12563 * 83.78218 * 5 4 2 32 32 H 1.08996 * 109.47279 * 299.99883 * 11 10 8 33 33 H 1.09004 * 109.47025 * 59.99628 * 11 10 8 34 34 H 1.09006 * 109.47016 * 300.00224 * 12 11 10 35 35 H 1.09005 * 109.46778 * 59.99734 * 12 11 10 36 36 H 0.97001 * 120.00413 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4393 0.0000 4 6 2.0538 -0.7475 -1.2450 5 6 2.3682 -2.1575 -0.6749 6 6 2.8407 -1.7975 0.7562 7 1 3.8899 -1.5023 0.7451 8 6 2.6371 -2.9674 1.6841 9 8 1.8518 -2.8836 2.5985 10 8 3.3283 -4.1024 1.4948 11 6 3.0818 -5.1876 2.4273 12 6 3.9532 -6.3886 2.0542 13 6 3.6968 -7.5152 3.0216 14 1 2.9833 -7.3876 3.8223 15 6 4.3731 -8.7089 2.8846 16 7 5.2415 -8.8645 1.9093 17 14 4.0547 -10.1056 4.0834 18 1 2.9519 -10.9573 3.5697 19 1 5.2855 -10.9238 4.2283 20 1 3.6737 -9.5463 5.4052 21 8 2.0158 -0.6917 1.1564 22 1 -0.3634 0.5226 0.8848 23 1 -0.3633 0.5049 -0.8951 24 1 -0.3633 -1.0277 0.0101 25 1 3.1387 1.4327 0.0103 26 1 1.6970 1.9523 -0.8950 27 1 1.6803 1.9584 0.8849 28 1 2.9571 -0.2746 -1.6299 29 1 1.2851 -0.8034 -2.0159 30 1 3.1637 -2.6418 -1.2411 31 1 1.4730 -2.7791 -0.6482 32 1 3.3263 -4.8609 3.4380 33 1 2.0309 -5.4737 2.3823 34 1 3.7082 -6.7152 1.0435 35 1 5.0041 -6.1028 2.0989 36 1 5.7170 -9.7044 1.8127 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785250275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:32 Heat of formation + Delta-G solvation = -170.726518 kcal Electronic energy + Delta-G solvation = -17487.664756 eV Core-core repulsion = 14549.602916 eV Total energy + Delta-G solvation = -2938.061840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.85950 -40.47761 -37.70703 -35.48055 -34.29199 -33.25180 -32.24389 -28.40194 -28.24218 -26.75789 -23.76066 -23.01840 -22.05909 -20.97496 -19.14583 -18.34115 -17.86800 -17.66739 -17.04974 -16.54403 -16.23098 -15.23148 -15.15203 -14.61354 -14.43112 -14.38221 -14.16981 -13.42610 -13.26846 -13.15764 -12.98131 -12.88338 -12.71849 -12.62567 -12.57333 -12.50929 -11.87255 -11.76957 -11.56582 -11.53087 -11.52751 -11.32242 -10.67517 -10.62318 -8.28324 -6.41632 1.04789 1.35831 1.42339 1.43688 1.54822 2.38172 2.80105 3.06047 3.35489 3.57478 3.77009 3.91216 3.99569 4.10295 4.17202 4.20667 4.25974 4.55737 4.64756 4.70953 4.76784 4.84544 4.92176 4.97172 4.99788 5.08725 5.20733 5.27952 5.39704 5.44343 5.47728 5.71629 5.95613 6.05270 6.66181 6.72007 7.28133 8.84181 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.060677 B = 0.004000 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.351070 B = 6998.789950 C = 7189.276267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.082 3.918 3 C -0.149 4.149 4 C -0.132 4.132 5 C -0.142 4.142 6 C 0.093 3.907 7 H 0.134 0.866 8 C 0.450 3.550 9 O -0.536 6.536 10 O -0.356 6.356 11 C 0.089 3.911 12 C 0.033 3.967 13 C -0.553 4.553 14 H 0.063 0.937 15 C 0.008 3.992 16 N -0.925 5.925 17 Si 0.973 3.027 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.265 1.265 21 O -0.376 6.376 22 H 0.052 0.948 23 H 0.097 0.903 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.010 0.990 35 H 0.009 0.991 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 18.557 -9.122 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 C -0.206 4.206 4 C -0.169 4.169 5 C -0.179 4.179 6 C 0.034 3.966 7 H 0.151 0.849 8 C 0.293 3.707 9 O -0.426 6.426 10 O -0.273 6.273 11 C 0.016 3.984 12 C -0.004 4.004 13 C -0.591 4.591 14 H 0.081 0.919 15 C -0.191 4.191 16 N -0.564 5.564 17 Si 0.797 3.203 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.189 1.189 21 O -0.297 6.297 22 H 0.071 0.929 23 H 0.116 0.884 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.029 0.971 35 H 0.027 0.973 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.858 18.492 -8.706 21.262 hybrid contribution -0.108 -1.094 0.861 1.396 sum -5.966 17.398 -7.846 19.996 Atomic orbital electron populations 1.22123 0.93671 1.02000 1.03305 1.22586 0.94825 0.93567 0.84633 1.22085 1.01868 0.93289 1.03339 1.23269 1.04066 0.92485 0.97083 1.23269 1.03320 0.99579 0.91742 1.22554 0.98549 0.83168 0.92299 0.84922 1.24432 0.77270 0.84541 0.84433 1.90619 1.35833 1.83055 1.33056 1.86489 1.62195 1.23122 1.55453 1.23210 1.00302 0.84212 0.90645 1.18976 0.94405 0.90105 0.96941 1.21366 1.24944 0.98695 1.14088 0.91913 1.25935 0.94277 1.01362 0.97514 1.70081 1.26779 1.26835 1.32673 0.85327 0.77988 0.78131 0.78885 1.19476 1.20235 1.18921 1.88537 1.67472 1.41241 1.32413 0.92871 0.88428 0.93701 0.91623 0.88676 0.92781 0.87493 0.87321 0.86529 0.91103 0.92465 0.92368 0.97150 0.97262 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.73 71.98 0.63 -2.12 16 2 C 0.08 1.53 1.27 -10.33 -0.01 1.52 16 3 C -0.15 -2.07 8.75 71.98 0.63 -1.44 16 4 C -0.13 -1.80 6.09 31.85 0.19 -1.61 16 5 C -0.14 -2.85 6.56 32.05 0.21 -2.64 16 6 C 0.09 2.51 3.97 30.51 0.12 2.63 16 7 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 8 C 0.45 16.96 7.31 71.24 0.52 17.48 16 9 O -0.54 -24.01 16.30 28.22 0.46 -23.55 16 10 O -0.36 -14.67 10.22 -51.43 -0.53 -15.20 16 11 C 0.09 4.17 5.40 71.98 0.39 4.56 16 12 C 0.03 1.78 5.35 29.85 0.16 1.94 16 13 C -0.55 -31.73 9.11 25.60 0.23 -31.50 16 14 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 15 C 0.01 0.48 5.46 84.65 0.46 0.94 16 16 N -0.92 -55.20 13.29 21.44 0.28 -54.91 16 17 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 21 O -0.38 -10.71 9.93 -130.48 -1.30 -12.00 16 22 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 23 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.11 1.01 7.85 -2.39 -0.02 0.99 16 29 H 0.11 1.07 7.82 -2.38 -0.02 1.06 16 30 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.62 8.05 -2.38 -0.02 1.60 16 32 H 0.06 2.67 8.13 -2.39 -0.02 2.65 16 33 H 0.06 2.69 8.13 -2.38 -0.02 2.67 16 34 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -70.75 306.05 5.52 -65.22 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 1.04 Total: 4.85 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 3.53 Total: -10.24 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.28 Total: -54.91 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -1.36 Total: -50.75 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -70.75 5.52 -65.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785250275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.503 kcal (2) G-P(sol) polarization free energy of solvation -70.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds