Wall clock time and date at job start Mon Mar 30 2020 04:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.86575 * 2 1 4 4 C 1.54099 * 109.87963 * 238.83741 * 2 1 3 5 5 C 1.54815 * 104.18723 * 242.60661 * 4 2 1 6 6 C 1.55002 * 102.09032 * 20.88011 * 5 4 2 7 7 H 1.09002 * 110.61904 * 81.47860 * 6 5 4 8 8 C 1.50697 * 110.75204 * 204.41231 * 6 5 4 9 9 O 1.20826 * 120.00251 * 112.72854 * 8 6 5 10 10 O 1.34228 * 120.00252 * 292.73174 * 8 6 5 11 11 C 1.45199 * 117.00166 * 179.97438 * 10 8 6 12 12 C 1.53007 * 109.47013 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.46899 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00399 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99615 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99873 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99818 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47538 * 89.99845 * 17 15 13 19 19 H 1.48501 * 109.47248 * 209.99953 * 17 15 13 20 20 H 1.48498 * 109.46975 * 329.99623 * 17 15 13 21 21 O 1.43744 * 109.87701 * 121.00459 * 2 1 3 22 22 H 1.08994 * 109.47273 * 300.44808 * 1 2 3 23 23 H 1.09005 * 109.46901 * 60.44994 * 1 2 3 24 24 H 1.09004 * 109.47178 * 180.44530 * 1 2 3 25 25 H 1.09005 * 109.46729 * 179.55619 * 3 2 1 26 26 H 1.09004 * 109.47338 * 299.54300 * 3 2 1 27 27 H 1.08998 * 109.47728 * 59.55302 * 3 2 1 28 28 H 1.08999 * 110.48774 * 1.27956 * 4 2 1 29 29 H 1.08999 * 110.48978 * 123.79858 * 4 2 1 30 30 H 1.08994 * 110.90611 * 262.68885 * 5 4 2 31 31 H 1.08995 * 110.90822 * 139.07665 * 5 4 2 32 32 H 1.08992 * 109.47376 * 299.99364 * 11 10 8 33 33 H 1.08994 * 109.47084 * 60.00330 * 11 10 8 34 34 H 1.09002 * 109.46648 * 299.99984 * 12 11 10 35 35 H 1.08992 * 109.47079 * 59.99825 * 12 11 10 36 36 H 0.97006 * 119.99570 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 2.0541 -0.7499 -1.2401 5 6 2.8325 -1.9534 -0.6549 6 6 2.2280 -2.0703 0.7676 7 1 1.2813 -2.6098 0.7393 8 6 3.1948 -2.7473 1.7046 9 8 3.6926 -2.1247 2.6126 10 8 3.5030 -4.0421 1.5306 11 6 4.4416 -4.6284 2.4705 12 6 4.6674 -6.0995 2.1152 13 6 5.6411 -6.7082 3.0912 14 1 6.0577 -6.1060 3.8850 15 6 6.0002 -8.0339 2.9705 16 7 5.4925 -8.7673 2.0040 17 14 7.2066 -8.7886 4.1805 18 1 6.4623 -9.3527 5.3350 19 1 7.9709 -9.8699 3.5082 20 1 8.1459 -7.7432 4.6601 21 8 2.0188 -0.6963 1.1587 22 1 -0.3633 0.5207 0.8859 23 1 -0.3633 0.5069 -0.8940 24 1 -0.3634 -1.0277 0.0080 25 1 3.1399 1.4313 0.0080 26 1 1.6969 1.9529 -0.8941 27 1 1.6837 1.9577 0.8859 28 1 1.2238 -1.0957 -1.8559 29 1 2.7179 -0.1096 -1.8209 30 1 3.9003 -1.7399 -0.6073 31 1 2.6433 -2.8575 -1.2334 32 1 5.3894 -4.0926 2.4196 33 1 4.0374 -4.5568 3.4801 34 1 3.7194 -6.6351 2.1664 35 1 5.0713 -6.1715 1.1055 36 1 5.7449 -9.7001 1.9193 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785250276.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:35 Heat of formation + Delta-G solvation = -151.024446 kcal Electronic energy + Delta-G solvation = -17454.591505 eV Core-core repulsion = 14517.384011 eV Total energy + Delta-G solvation = -2937.207494 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.58377 -39.25472 -36.05120 -33.41506 -33.31121 -32.21198 -30.28622 -27.69527 -27.20265 -24.86494 -22.68969 -21.17977 -20.50613 -20.19582 -17.58383 -16.67160 -16.44070 -15.95285 -15.57777 -15.36280 -14.57745 -14.22357 -14.04745 -13.67735 -13.24463 -12.82397 -12.57162 -12.36432 -12.32372 -12.00870 -11.94306 -11.62495 -11.23357 -11.04632 -10.94456 -10.89402 -10.75286 -10.67711 -10.19200 -9.87771 -9.65461 -9.56472 -9.29658 -8.44977 -6.11173 -4.15479 2.51491 2.73607 3.28603 3.34569 3.38808 3.86930 4.31101 4.39031 4.53740 4.56025 4.83846 4.84451 4.94877 5.24812 5.25527 5.28554 5.33379 5.42623 5.55105 5.58477 5.65843 5.78383 5.84715 5.92601 6.04391 6.08421 6.08902 6.61921 6.72494 6.95934 7.55127 7.61065 7.86235 8.18612 8.26147 8.90001 9.48985 11.00315 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.061653 B = 0.003959 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.045065 B = 7071.364958 C = 7263.206392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.140 4.140 6 C 0.086 3.914 7 H 0.106 0.894 8 C 0.459 3.541 9 O -0.498 6.498 10 O -0.354 6.354 11 C 0.076 3.924 12 C 0.025 3.975 13 C -0.527 4.527 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 O -0.341 6.341 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.370 16.175 -8.255 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 C -0.200 4.200 4 C -0.183 4.183 5 C -0.178 4.178 6 C 0.027 3.973 7 H 0.124 0.876 8 C 0.301 3.699 9 O -0.385 6.385 10 O -0.271 6.271 11 C 0.003 3.997 12 C -0.012 4.012 13 C -0.565 4.565 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 O -0.260 6.260 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.149 16.241 -7.830 20.219 hybrid contribution 0.647 -0.585 0.617 1.068 sum -8.502 15.657 -7.213 19.221 Atomic orbital electron populations 1.22280 0.94529 1.02699 1.02621 1.22222 0.93866 0.93449 0.85131 1.21890 1.02011 0.93639 1.02415 1.23066 1.00650 0.96936 0.97619 1.23057 1.01256 0.99736 0.93735 1.22458 0.97385 0.85149 0.92334 0.87642 1.22965 0.81096 0.81807 0.84082 1.90649 1.50636 1.65628 1.31628 1.86493 1.60369 1.23940 1.56259 1.23690 0.89014 0.96799 0.90176 1.19176 0.97955 0.85860 0.98211 1.20985 1.26209 0.95724 1.13578 0.92224 1.24981 0.96425 0.97011 0.95718 1.69977 1.43610 1.07843 1.31427 0.86462 0.80965 0.78929 0.80906 1.20465 1.21046 1.19702 1.89029 1.85937 1.18405 1.32656 0.91686 0.91401 0.92066 0.91705 0.91186 0.91743 0.89952 0.89852 0.89824 0.88419 0.92230 0.92211 0.95300 0.95299 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.61 37.16 0.32 -1.04 16 2 C 0.09 0.95 1.19 -90.05 -0.11 0.84 16 3 C -0.14 -1.26 8.68 37.16 0.32 -0.94 16 4 C -0.15 -1.26 6.28 -25.20 -0.16 -1.42 16 5 C -0.14 -1.57 6.58 -24.72 -0.16 -1.73 16 6 C 0.09 1.20 3.81 -26.83 -0.10 1.10 16 7 H 0.11 1.26 8.13 -51.93 -0.42 0.84 16 8 C 0.46 8.60 7.34 36.00 0.26 8.86 16 9 O -0.50 -10.90 16.31 -25.25 -0.41 -11.31 16 10 O -0.35 -7.19 10.22 -39.25 -0.40 -7.59 16 11 C 0.08 1.72 5.41 37.16 0.20 1.92 16 12 C 0.03 0.66 5.35 -27.88 -0.15 0.51 16 13 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 17 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 21 O -0.34 -4.99 10.13 -54.35 -0.55 -5.55 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.57 7.70 -51.93 -0.40 0.17 16 29 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 30 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 33 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -32.28 305.78 -6.85 -39.13 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -5.83 Total: -4.65 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 0.02 Total: -5.48 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -1.36 Total: -24.45 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.28 -6.85 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785250276.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.890 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds