Wall clock time and date at job start Mon Mar 30 2020 04:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.86575 * 2 1 4 4 C 1.54099 * 109.87963 * 238.83741 * 2 1 3 5 5 C 1.54815 * 104.18723 * 242.60661 * 4 2 1 6 6 C 1.55002 * 102.09032 * 20.88011 * 5 4 2 7 7 H 1.09002 * 110.61904 * 81.47860 * 6 5 4 8 8 C 1.50697 * 110.75204 * 204.41231 * 6 5 4 9 9 O 1.20826 * 120.00251 * 112.72854 * 8 6 5 10 10 O 1.34228 * 120.00252 * 292.73174 * 8 6 5 11 11 C 1.45199 * 117.00166 * 179.97438 * 10 8 6 12 12 C 1.53007 * 109.47013 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.46899 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00399 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99615 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99873 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99818 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47538 * 89.99845 * 17 15 13 19 19 H 1.48501 * 109.47248 * 209.99953 * 17 15 13 20 20 H 1.48498 * 109.46975 * 329.99623 * 17 15 13 21 21 O 1.43744 * 109.87701 * 121.00459 * 2 1 3 22 22 H 1.08994 * 109.47273 * 300.44808 * 1 2 3 23 23 H 1.09005 * 109.46901 * 60.44994 * 1 2 3 24 24 H 1.09004 * 109.47178 * 180.44530 * 1 2 3 25 25 H 1.09005 * 109.46729 * 179.55619 * 3 2 1 26 26 H 1.09004 * 109.47338 * 299.54300 * 3 2 1 27 27 H 1.08998 * 109.47728 * 59.55302 * 3 2 1 28 28 H 1.08999 * 110.48774 * 1.27956 * 4 2 1 29 29 H 1.08999 * 110.48978 * 123.79858 * 4 2 1 30 30 H 1.08994 * 110.90611 * 262.68885 * 5 4 2 31 31 H 1.08995 * 110.90822 * 139.07665 * 5 4 2 32 32 H 1.08992 * 109.47376 * 299.99364 * 11 10 8 33 33 H 1.08994 * 109.47084 * 60.00330 * 11 10 8 34 34 H 1.09002 * 109.46648 * 299.99984 * 12 11 10 35 35 H 1.08992 * 109.47079 * 59.99825 * 12 11 10 36 36 H 0.97006 * 119.99570 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 2.0541 -0.7499 -1.2401 5 6 2.8325 -1.9534 -0.6549 6 6 2.2280 -2.0703 0.7676 7 1 1.2813 -2.6098 0.7393 8 6 3.1948 -2.7473 1.7046 9 8 3.6926 -2.1247 2.6126 10 8 3.5030 -4.0421 1.5306 11 6 4.4416 -4.6284 2.4705 12 6 4.6674 -6.0995 2.1152 13 6 5.6411 -6.7082 3.0912 14 1 6.0577 -6.1060 3.8850 15 6 6.0002 -8.0339 2.9705 16 7 5.4925 -8.7673 2.0040 17 14 7.2066 -8.7886 4.1805 18 1 6.4623 -9.3527 5.3350 19 1 7.9709 -9.8699 3.5082 20 1 8.1459 -7.7432 4.6601 21 8 2.0188 -0.6963 1.1587 22 1 -0.3633 0.5207 0.8859 23 1 -0.3633 0.5069 -0.8940 24 1 -0.3634 -1.0277 0.0080 25 1 3.1399 1.4313 0.0080 26 1 1.6969 1.9529 -0.8941 27 1 1.6837 1.9577 0.8859 28 1 1.2238 -1.0957 -1.8559 29 1 2.7179 -0.1096 -1.8209 30 1 3.9003 -1.7399 -0.6073 31 1 2.6433 -2.8575 -1.2334 32 1 5.3894 -4.0926 2.4196 33 1 4.0374 -4.5568 3.4801 34 1 3.7194 -6.6351 2.1664 35 1 5.0713 -6.1715 1.1055 36 1 5.7449 -9.7001 1.9193 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785250276.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:35 Heat of formation + Delta-G solvation = -170.136064 kcal Electronic energy + Delta-G solvation = -17455.420247 eV Core-core repulsion = 14517.384011 eV Total energy + Delta-G solvation = -2938.036236 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.86152 -40.50489 -37.72856 -35.48026 -34.22244 -33.22177 -32.24931 -28.53729 -28.19933 -26.76654 -23.77240 -22.98260 -21.96505 -21.06807 -19.10855 -18.32500 -17.86416 -17.71792 -16.95490 -16.54042 -16.18227 -15.32679 -15.19773 -14.78863 -14.40851 -14.34129 -14.25551 -13.34787 -13.19463 -13.16388 -12.99257 -12.88654 -12.73338 -12.62175 -12.58501 -12.42091 -11.87237 -11.70827 -11.59656 -11.54228 -11.52415 -11.31059 -10.77843 -10.62256 -8.28251 -6.41483 1.02171 1.33309 1.42508 1.43089 1.54824 2.38337 2.87515 3.06199 3.38926 3.55091 3.79349 3.89298 3.97300 4.09522 4.17417 4.20752 4.27472 4.49292 4.64467 4.69378 4.76699 4.88068 4.90452 4.94956 5.01298 5.11832 5.19901 5.27334 5.38993 5.44390 5.46766 5.71504 5.86314 6.05040 6.63953 6.71902 7.28248 8.84260 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.061653 B = 0.003959 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.045065 B = 7071.364958 C = 7263.206392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.079 3.921 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.140 4.140 6 C 0.088 3.912 7 H 0.131 0.869 8 C 0.457 3.543 9 O -0.535 6.535 10 O -0.355 6.355 11 C 0.089 3.911 12 C 0.033 3.967 13 C -0.553 4.553 14 H 0.063 0.937 15 C 0.008 3.992 16 N -0.925 5.925 17 Si 0.973 3.027 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.264 1.264 21 O -0.374 6.374 22 H 0.055 0.945 23 H 0.094 0.906 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.009 0.991 35 H 0.010 0.990 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.842 16.796 -9.087 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 C -0.199 4.199 4 C -0.172 4.172 5 C -0.178 4.178 6 C 0.030 3.970 7 H 0.148 0.852 8 C 0.300 3.700 9 O -0.424 6.424 10 O -0.272 6.272 11 C 0.016 3.984 12 C -0.005 4.005 13 C -0.591 4.591 14 H 0.081 0.919 15 C -0.191 4.191 16 N -0.564 5.564 17 Si 0.797 3.203 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.189 1.189 21 O -0.294 6.294 22 H 0.074 0.926 23 H 0.113 0.887 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.029 0.971 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.638 16.883 -8.678 21.290 hybrid contribution 0.745 -0.708 0.842 1.328 sum -8.893 16.175 -7.837 20.054 Atomic orbital electron populations 1.22277 0.92932 1.03071 1.03546 1.22605 0.95164 0.93673 0.84434 1.21940 1.01239 0.93232 1.03534 1.23089 1.01371 0.95632 0.97098 1.23120 1.00675 1.01825 0.92136 1.22646 0.96998 0.85181 0.92183 0.85193 1.24049 0.80979 0.80732 0.84206 1.90625 1.52282 1.66025 1.33469 1.86484 1.59837 1.25340 1.55524 1.23231 0.89702 0.94983 0.90451 1.18980 0.96547 0.87932 0.96993 1.21367 1.26971 0.96530 1.14206 0.91872 1.25939 0.98199 0.97400 0.97566 1.70088 1.44847 1.08378 1.33061 0.85324 0.78483 0.78092 0.78416 1.19546 1.20225 1.18874 1.89010 1.86489 1.18631 1.35305 0.92560 0.88736 0.91945 0.92938 0.88179 0.92562 0.87313 0.88374 0.91284 0.86855 0.92276 0.92349 0.97254 0.97130 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 8.61 71.98 0.62 -1.62 16 2 C 0.08 1.46 1.19 -10.42 -0.01 1.44 16 3 C -0.14 -2.27 8.68 71.98 0.62 -1.65 16 4 C -0.13 -1.91 6.28 31.59 0.20 -1.72 16 5 C -0.14 -2.89 6.58 31.90 0.21 -2.68 16 6 C 0.09 2.40 3.81 30.53 0.12 2.52 16 7 H 0.13 2.88 8.13 -2.39 -0.02 2.86 16 8 C 0.46 17.25 7.34 71.23 0.52 17.77 16 9 O -0.53 -23.93 16.31 28.18 0.46 -23.47 16 10 O -0.36 -14.63 10.22 -51.40 -0.53 -15.16 16 11 C 0.09 4.15 5.41 71.98 0.39 4.54 16 12 C 0.03 1.77 5.35 29.85 0.16 1.93 16 13 C -0.55 -31.65 9.11 25.60 0.23 -31.42 16 14 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 15 C 0.01 0.47 5.46 84.65 0.46 0.93 16 16 N -0.92 -55.16 13.29 21.45 0.28 -54.87 16 17 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 21 O -0.37 -10.71 10.13 -130.70 -1.32 -12.03 16 22 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.06 0.85 8.13 -2.38 -0.02 0.83 16 25 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.11 1.01 7.70 -2.39 -0.02 0.99 16 29 H 0.10 1.14 7.70 -2.39 -0.02 1.12 16 30 H 0.07 1.62 8.05 -2.39 -0.02 1.60 16 31 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 2.73 8.13 -2.39 -0.02 2.71 16 33 H 0.06 2.70 8.13 -2.39 -0.02 2.69 16 34 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 Total: -1.00 -70.39 305.78 5.48 -64.91 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.04 Total: 4.79 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 3.52 Total: -9.96 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.28 Total: -54.87 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -1.39 Total: -50.65 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.39 5.48 -64.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785250276.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.229 kcal (2) G-P(sol) polarization free energy of solvation -70.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds