Wall clock time and date at job start Mon Mar 30 2020 04:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00007 * 2 1 4 4 H 1.48501 * 109.47257 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46996 * 299.99535 * 3 2 1 6 6 H 1.48495 * 109.47323 * 59.99760 * 3 2 1 7 7 C 1.37879 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99726 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47497 * 179.97438 * 9 7 2 11 11 O 1.45195 * 109.47187 * 180.02562 * 10 9 7 12 12 C 1.34238 * 116.99876 * 180.02562 * 11 10 9 13 13 O 1.20826 * 119.99854 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99937 * 179.97438 * 12 11 10 15 15 H 1.08994 * 108.78610 * 301.59150 * 14 12 11 16 16 C 1.54153 * 108.72851 * 183.22698 * 14 12 11 17 17 C 1.53529 * 111.70507 * 197.54964 * 16 14 12 18 18 C 1.51073 * 111.26203 * 319.34477 * 17 16 14 19 19 O 1.43393 * 107.52888 * 94.40323 * 18 17 16 20 20 C 1.36322 * 118.03160 * 276.33901 * 19 18 17 21 21 C 1.50982 * 108.81444 * 60.00129 * 14 12 11 22 22 H 0.97001 * 120.00462 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46798 * 60.00151 * 9 7 2 24 24 H 1.09005 * 109.47026 * 300.00620 * 9 7 2 25 25 H 1.09005 * 109.46835 * 60.00342 * 10 9 7 26 26 H 1.08998 * 109.47472 * 300.00778 * 10 9 7 27 27 H 1.08998 * 109.03921 * 318.15339 * 16 14 12 28 28 H 1.09000 * 109.03958 * 77.09984 * 16 14 12 29 29 H 1.09004 * 109.22291 * 198.82768 * 17 16 14 30 30 H 1.09002 * 109.04942 * 79.74978 * 17 16 14 31 31 H 1.09002 * 109.85742 * 334.87708 * 18 17 16 32 32 H 1.09001 * 109.86118 * 213.92917 * 18 17 16 33 33 H 1.09000 * 109.15575 * 182.29167 * 20 19 18 34 34 H 1.08999 * 109.15660 * 301.51078 * 20 19 18 35 35 H 1.08998 * 109.51391 * 93.15128 * 21 14 12 36 36 H 1.09000 * 109.55342 * 333.02495 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 8 1.5192 -4.9195 0.0020 12 6 2.2503 -6.0453 0.0024 13 8 3.4569 -5.9820 0.0018 14 6 1.5662 -7.3880 0.0035 15 1 0.9255 -7.4548 0.8828 16 6 2.6402 -8.4907 0.0859 17 6 2.0840 -9.8579 -0.3368 18 6 0.6890 -10.0722 0.2023 19 8 -0.2348 -9.6670 -0.8168 20 6 -0.5459 -8.3430 -0.9098 21 6 0.7079 -7.4983 -1.2338 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8920 25 1 2.8725 -3.6040 0.8910 26 1 2.8713 -3.6047 -0.8889 27 1 3.4714 -8.2271 -0.5681 28 1 3.0026 -8.5582 1.1117 29 1 2.7375 -10.6439 0.0417 30 1 2.0580 -9.9103 -1.4252 31 1 0.5412 -9.4682 1.0975 32 1 0.5411 -11.1260 0.4383 33 1 -1.2847 -8.2038 -1.6990 34 1 -0.9674 -8.0073 0.0377 35 1 1.2762 -7.9803 -2.0293 36 1 0.4029 -6.5027 -1.5560 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786475458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:19 Heat of formation + Delta-G solvation = -155.687900 kcal Electronic energy + Delta-G solvation = -17597.099613 eV Core-core repulsion = 14659.689896 eV Total energy + Delta-G solvation = -2937.409716 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.61121 -39.32483 -36.31230 -34.80728 -33.38738 -32.64184 -30.27395 -27.37957 -26.32377 -24.89675 -22.31044 -21.81595 -20.78954 -19.31456 -17.63280 -16.77525 -16.57764 -16.16242 -16.14104 -15.36781 -15.27561 -14.76264 -14.48155 -13.57251 -13.34367 -12.82620 -12.62300 -12.40868 -12.37642 -11.94635 -11.26337 -11.16722 -11.10585 -10.96312 -10.88885 -10.77238 -10.67105 -10.58436 -10.12682 -9.72384 -9.66376 -9.51142 -9.29034 -8.46734 -6.12470 -4.16855 2.54397 3.11031 3.26142 3.33786 3.38959 3.65826 4.37130 4.43055 4.62374 4.72392 4.76993 4.87535 5.08135 5.24250 5.26147 5.30942 5.38299 5.45283 5.57115 5.67882 5.82169 5.87235 5.93264 6.06738 6.07650 6.09872 6.16547 6.61508 6.98564 7.40857 7.53839 7.59744 7.84725 8.16888 8.24883 8.88889 9.47783 10.99068 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.050260 B = 0.004234 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.971923 B = 6611.051138 C = 7038.874213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.356 6.356 12 C 0.456 3.544 13 O -0.518 6.518 14 C -0.083 4.083 15 H 0.101 0.899 16 C -0.108 4.108 17 C -0.151 4.151 18 C 0.063 3.937 19 O -0.385 6.385 20 C 0.078 3.922 21 C -0.160 4.160 22 H 0.263 0.737 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 -19.010 -0.179 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.002 3.998 11 O -0.272 6.272 12 C 0.299 3.701 13 O -0.408 6.408 14 C -0.102 4.102 15 H 0.119 0.881 16 C -0.146 4.146 17 C -0.188 4.188 18 C -0.013 4.013 19 O -0.303 6.303 20 C 0.000 4.000 21 C -0.197 4.197 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.270 -18.936 -0.290 18.940 hybrid contribution 0.793 1.388 0.269 1.621 sum 1.063 -17.548 -0.021 17.580 Atomic orbital electron populations 1.69978 1.06096 1.26900 1.49847 1.24981 0.94914 0.99397 0.94836 0.86418 0.80061 0.83137 0.77725 1.19593 1.20796 1.20812 1.21022 0.93216 0.90127 1.52113 0.92227 1.19171 0.94174 0.89061 0.98848 1.23641 0.96383 0.78879 1.00886 1.86513 1.42423 1.15803 1.82500 1.23577 0.86519 0.87420 0.72559 1.90611 1.15918 1.88315 1.45908 1.21042 0.98085 0.89521 1.01533 0.88082 1.21821 0.97415 0.92307 1.03056 1.22006 0.97131 0.96930 1.02772 1.22510 0.88063 1.00419 0.90273 1.86343 1.63897 1.24949 1.55138 1.21786 0.95195 0.81619 1.01386 1.22358 0.97452 1.03187 0.96751 0.92747 0.95355 0.95377 0.92393 0.92373 0.90158 0.91297 0.90697 0.90396 0.92441 0.88936 0.88335 0.93950 0.90144 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.65 5.35 -27.89 -0.15 0.50 16 10 C 0.07 1.68 5.40 37.15 0.20 1.88 16 11 O -0.36 -7.13 9.70 -39.28 -0.38 -7.51 16 12 C 0.46 7.99 7.11 36.00 0.26 8.25 16 13 O -0.52 -10.33 15.28 -18.75 -0.29 -10.62 16 14 C -0.08 -1.05 2.11 -92.18 -0.19 -1.24 16 15 H 0.10 1.15 6.60 -51.93 -0.34 0.81 16 16 C -0.11 -1.19 4.88 -25.85 -0.13 -1.32 16 17 C -0.15 -1.30 5.44 -27.43 -0.15 -1.45 16 18 C 0.06 0.53 6.48 36.19 0.23 0.76 16 19 O -0.39 -4.03 9.91 -20.77 -0.21 -4.24 16 20 C 0.08 0.79 6.39 38.01 0.24 1.03 16 21 C -0.16 -1.85 5.16 -26.89 -0.14 -1.99 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 26 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 27 H 0.08 1.01 7.31 -51.93 -0.38 0.63 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.72 7.32 -51.93 -0.38 0.34 16 31 H 0.06 0.46 6.68 -51.93 -0.35 0.12 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.04 0.41 7.68 -51.93 -0.40 0.01 16 35 H 0.08 0.90 7.17 -51.93 -0.37 0.53 16 36 H 0.09 1.17 7.34 -51.93 -0.38 0.79 16 LS Contribution 293.18 15.07 4.42 4.42 Total: -1.00 -31.26 293.18 -6.50 -37.76 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -5.52 Total: -3.46 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -0.23 Total: -7.14 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.74 Total: -25.59 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.87 Total: -22.36 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.26 -6.50 -37.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786475458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.931 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds