Wall clock time and date at job start Mon Mar 30 2020 04:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00007 * 2 1 4 4 H 1.48501 * 109.47257 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46996 * 299.99535 * 3 2 1 6 6 H 1.48495 * 109.47323 * 59.99760 * 3 2 1 7 7 C 1.37879 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99726 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47497 * 179.97438 * 9 7 2 11 11 O 1.45195 * 109.47187 * 180.02562 * 10 9 7 12 12 C 1.34238 * 116.99876 * 180.02562 * 11 10 9 13 13 O 1.20826 * 119.99854 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99937 * 179.97438 * 12 11 10 15 15 H 1.08994 * 108.78610 * 301.59150 * 14 12 11 16 16 C 1.54153 * 108.72851 * 183.22698 * 14 12 11 17 17 C 1.53529 * 111.70507 * 197.54964 * 16 14 12 18 18 C 1.51073 * 111.26203 * 319.34477 * 17 16 14 19 19 O 1.43393 * 107.52888 * 94.40323 * 18 17 16 20 20 C 1.36322 * 118.03160 * 276.33901 * 19 18 17 21 21 C 1.50982 * 108.81444 * 60.00129 * 14 12 11 22 22 H 0.97001 * 120.00462 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46798 * 60.00151 * 9 7 2 24 24 H 1.09005 * 109.47026 * 300.00620 * 9 7 2 25 25 H 1.09005 * 109.46835 * 60.00342 * 10 9 7 26 26 H 1.08998 * 109.47472 * 300.00778 * 10 9 7 27 27 H 1.08998 * 109.03921 * 318.15339 * 16 14 12 28 28 H 1.09000 * 109.03958 * 77.09984 * 16 14 12 29 29 H 1.09004 * 109.22291 * 198.82768 * 17 16 14 30 30 H 1.09002 * 109.04942 * 79.74978 * 17 16 14 31 31 H 1.09002 * 109.85742 * 334.87708 * 18 17 16 32 32 H 1.09001 * 109.86118 * 213.92917 * 18 17 16 33 33 H 1.09000 * 109.15575 * 182.29167 * 20 19 18 34 34 H 1.08999 * 109.15660 * 301.51078 * 20 19 18 35 35 H 1.08998 * 109.51391 * 93.15128 * 21 14 12 36 36 H 1.09000 * 109.55342 * 333.02495 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 8 1.5192 -4.9195 0.0020 12 6 2.2503 -6.0453 0.0024 13 8 3.4569 -5.9820 0.0018 14 6 1.5662 -7.3880 0.0035 15 1 0.9255 -7.4548 0.8828 16 6 2.6402 -8.4907 0.0859 17 6 2.0840 -9.8579 -0.3368 18 6 0.6890 -10.0722 0.2023 19 8 -0.2348 -9.6670 -0.8168 20 6 -0.5459 -8.3430 -0.9098 21 6 0.7079 -7.4983 -1.2338 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8920 25 1 2.8725 -3.6040 0.8910 26 1 2.8713 -3.6047 -0.8889 27 1 3.4714 -8.2271 -0.5681 28 1 3.0026 -8.5582 1.1117 29 1 2.7375 -10.6439 0.0417 30 1 2.0580 -9.9103 -1.4252 31 1 0.5412 -9.4682 1.0975 32 1 0.5411 -11.1260 0.4383 33 1 -1.2847 -8.2038 -1.6990 34 1 -0.9674 -8.0073 0.0377 35 1 1.2762 -7.9803 -2.0293 36 1 0.4029 -6.5027 -1.5560 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786475458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:18 Heat of formation + Delta-G solvation = -174.032885 kcal Electronic energy + Delta-G solvation = -17597.895111 eV Core-core repulsion = 14659.689896 eV Total energy + Delta-G solvation = -2938.205214 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.88538 -40.37629 -37.87501 -35.82407 -35.47042 -33.50826 -32.28004 -28.41386 -27.39333 -26.62352 -23.58425 -22.97689 -22.46911 -20.38599 -19.11855 -18.30716 -17.84734 -17.65322 -17.26188 -16.67840 -16.40280 -16.26091 -15.71319 -14.94469 -14.58067 -14.41697 -14.18451 -13.51660 -13.37930 -13.11354 -13.09347 -12.85538 -12.63303 -12.60831 -12.08978 -11.96193 -11.77783 -11.65033 -11.54417 -11.46986 -11.40502 -11.13165 -10.64122 -10.41775 -8.29376 -6.42843 1.10944 1.39735 1.40373 1.53538 1.69388 2.38340 2.94375 3.05080 3.45893 3.61910 3.73331 3.96123 4.08019 4.10033 4.17082 4.22921 4.40617 4.51646 4.57279 4.64400 4.65109 4.72747 4.85393 5.01893 5.07439 5.16089 5.21183 5.24914 5.35666 5.42968 5.52466 5.71601 6.03826 6.66381 6.67880 6.71807 7.27228 8.83410 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.050260 B = 0.004234 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.971923 B = 6611.051138 C = 7038.874213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.552 4.552 8 H 0.063 0.937 9 C 0.032 3.968 10 C 0.089 3.911 11 O -0.363 6.363 12 C 0.453 3.547 13 O -0.543 6.543 14 C -0.074 4.074 15 H 0.119 0.881 16 C -0.105 4.105 17 C -0.142 4.142 18 C 0.057 3.943 19 O -0.396 6.396 20 C 0.083 3.917 21 C -0.157 4.157 22 H 0.268 0.732 23 H 0.007 0.993 24 H 0.007 0.993 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -19.907 0.121 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.590 4.590 8 H 0.082 0.918 9 C -0.006 4.006 10 C 0.016 3.984 11 O -0.280 6.280 12 C 0.298 3.702 13 O -0.433 6.433 14 C -0.093 4.093 15 H 0.137 0.863 16 C -0.143 4.143 17 C -0.180 4.180 18 C -0.018 4.018 19 O -0.314 6.314 20 C 0.005 3.995 21 C -0.195 4.195 22 H 0.077 0.923 23 H 0.026 0.974 24 H 0.025 0.975 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.639 -19.861 0.009 19.871 hybrid contribution 0.669 1.588 0.181 1.733 sum 1.308 -18.272 0.190 18.320 Atomic orbital electron populations 1.70091 1.07788 1.28272 1.50314 1.25951 0.95843 1.03373 0.93983 0.85271 0.78843 0.78057 0.78100 1.18734 1.19959 1.19957 1.21399 0.93655 0.91294 1.52623 0.91845 1.18975 0.94289 0.90556 0.96733 1.23156 0.95109 0.79316 1.00786 1.86513 1.42615 1.15807 1.83022 1.24623 0.86460 0.87963 0.71158 1.90596 1.17144 1.88561 1.47031 1.21256 0.98592 0.86667 1.02820 0.86301 1.21839 0.96306 0.93013 1.03130 1.21958 0.97807 0.95757 1.02454 1.22727 0.87275 1.01918 0.89892 1.86342 1.64341 1.24740 1.55970 1.21771 0.94331 0.81358 1.02072 1.22360 0.98178 1.02735 0.96247 0.92272 0.97442 0.97457 0.92373 0.92457 0.92020 0.90657 0.88459 0.90997 0.91897 0.86642 0.87337 0.93421 0.89924 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 2 C 0.01 0.43 5.46 84.66 0.46 0.90 16 3 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.55 -31.56 9.11 25.60 0.23 -31.33 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.71 5.35 29.85 0.16 1.87 16 10 C 0.09 4.11 5.40 71.98 0.39 4.50 16 11 O -0.36 -14.74 9.70 -51.49 -0.50 -15.24 16 12 C 0.45 15.85 7.11 71.24 0.51 16.35 16 13 O -0.54 -21.71 15.28 21.96 0.34 -21.38 16 14 C -0.07 -1.81 2.11 -11.81 -0.02 -1.83 16 15 H 0.12 2.49 6.60 -2.39 -0.02 2.48 16 16 C -0.11 -2.16 4.88 31.16 0.15 -2.01 16 17 C -0.14 -2.10 5.44 30.14 0.16 -1.93 16 18 C 0.06 0.79 6.48 71.35 0.46 1.25 16 19 O -0.40 -7.34 9.91 -97.24 -0.96 -8.30 16 20 C 0.08 1.52 6.39 72.53 0.46 1.99 16 21 C -0.16 -3.51 5.16 30.49 0.16 -3.35 16 22 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 23 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 24 H 0.01 0.40 8.14 -2.38 -0.02 0.39 16 25 H 0.06 2.64 8.13 -2.38 -0.02 2.62 16 26 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 27 H 0.06 1.51 7.31 -2.39 -0.02 1.49 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.07 1.18 7.32 -2.39 -0.02 1.16 16 31 H 0.06 0.82 6.68 -2.39 -0.02 0.80 16 32 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 0.83 7.68 -2.39 -0.02 0.82 16 35 H 0.08 1.79 7.17 -2.39 -0.02 1.77 16 36 H 0.07 1.93 7.34 -2.39 -0.02 1.91 16 Total: -1.00 -66.95 293.18 5.36 -61.59 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.05 Total: 6.28 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 3.12 Total: -13.59 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.28 Total: -55.07 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -1.13 Total: -44.92 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.95 5.36 -61.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786475458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.441 kcal (2) G-P(sol) polarization free energy of solvation -66.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds