Wall clock time and date at job start Mon Mar 30 2020 04:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47171 * 2 1 4 4 H 1.09001 * 109.47466 * 305.59184 * 3 2 1 5 5 C 1.50705 * 109.47552 * 185.59185 * 3 2 1 6 6 H 1.08000 * 120.00217 * 274.99999 * 5 3 2 7 7 C 1.37873 * 119.99718 * 94.98852 * 5 3 2 8 8 N 1.31517 * 119.99943 * 184.84266 * 7 5 3 9 9 Si 1.86798 * 120.00345 * 4.85059 * 7 5 3 10 10 H 1.48502 * 109.47410 * 84.85791 * 9 7 5 11 11 H 1.48495 * 109.47373 * 204.86291 * 9 7 5 12 12 H 1.48501 * 109.47058 * 324.86259 * 9 7 5 13 13 O 1.45209 * 109.47163 * 65.59503 * 3 2 1 14 14 C 1.34225 * 116.99601 * 269.99822 * 13 3 2 15 15 O 1.20829 * 120.00552 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99962 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.82672 * 275.57169 * 16 14 13 18 18 C 1.54386 * 109.83112 * 154.58957 * 16 14 13 19 19 C 1.55306 * 102.25241 * 219.13678 * 18 16 14 20 20 C 1.54940 * 100.94322 * 34.13242 * 19 18 16 21 21 O 1.43236 * 109.82796 * 36.46197 * 16 14 13 22 22 H 1.09000 * 109.47463 * 300.00079 * 1 2 3 23 23 H 1.09001 * 109.46774 * 60.00575 * 1 2 3 24 24 H 1.09000 * 109.47088 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47463 * 239.99921 * 2 1 3 26 26 H 1.09001 * 109.46774 * 119.99425 * 2 1 3 27 27 H 0.97003 * 120.00356 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.46907 * 59.29336 * 17 16 14 29 29 H 1.08996 * 109.47027 * 179.29603 * 17 16 14 30 30 H 1.08994 * 109.46747 * 299.30033 * 17 16 14 31 31 H 1.09006 * 110.84595 * 337.32413 * 18 16 14 32 32 H 1.08999 * 110.84745 * 100.94006 * 18 16 14 33 33 H 1.09002 * 111.11942 * 276.21533 * 19 18 16 34 34 H 1.08995 * 111.16157 * 152.07405 * 19 18 16 35 35 H 1.08999 * 110.30808 * 204.64266 * 20 19 18 36 36 H 1.08998 * 110.39684 * 82.51897 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9845 -0.8357 5 6 3.5406 1.4448 -0.1384 6 1 4.1639 1.3339 0.7366 7 6 4.1179 1.5883 -1.3823 8 7 5.4229 1.4951 -1.5163 9 14 3.0466 1.9153 -2.8772 10 1 2.7806 3.3722 -2.9865 11 1 3.7467 1.4468 -4.1000 12 1 1.7605 1.1868 -2.7333 13 8 1.6680 2.0874 1.2467 14 6 0.4851 2.7211 1.2756 15 8 -0.2166 2.7361 0.2921 16 6 0.0315 3.4130 2.5353 17 6 -0.6431 2.4043 3.4672 18 6 -0.9562 4.5462 2.1838 19 6 -0.5409 5.6654 3.1773 20 6 0.9888 5.4328 3.2595 21 8 1.1555 4.0076 3.1947 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8932 -0.5138 0.8901 27 1 5.8291 1.5965 -2.3913 28 1 0.0614 1.6100 3.7140 29 1 -0.9575 2.9081 4.3812 30 1 -1.5136 1.9764 2.9702 31 1 -0.8208 4.8729 1.1527 32 1 -1.9851 4.2327 2.3605 33 1 -1.0128 5.5226 4.1494 34 1 -0.7671 6.6527 2.7747 35 1 1.3797 5.8170 4.2017 36 1 1.4915 5.9112 2.4190 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787083789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:43 Heat of formation + Delta-G solvation = -143.875434 kcal Electronic energy + Delta-G solvation = -18701.748118 eV Core-core repulsion = 15764.850628 eV Total energy + Delta-G solvation = -2936.897489 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.46468 -38.71339 -35.91123 -33.35169 -32.36808 -31.98899 -31.48440 -27.81589 -26.25093 -23.86351 -22.74084 -21.89182 -20.23752 -19.34945 -17.61870 -16.69338 -16.48042 -16.03990 -15.52826 -15.13677 -14.28973 -13.79937 -13.43580 -13.21001 -12.84500 -12.78066 -12.52047 -12.14446 -12.09137 -11.86789 -11.72860 -11.45283 -11.29831 -11.13927 -10.96359 -10.81554 -10.73112 -10.28603 -10.06407 -9.86693 -9.41715 -9.17494 -9.00657 -8.67328 -6.24421 -4.27449 2.81798 3.21355 3.29626 3.35408 3.50971 3.71941 4.28375 4.42907 4.69084 4.89340 5.00688 5.09108 5.20872 5.42841 5.51329 5.65270 5.69477 5.70288 5.80539 5.86853 5.90861 5.99656 6.01727 6.08168 6.17158 6.44679 6.62826 6.80845 6.83972 6.98469 7.18955 7.41150 7.56620 8.27338 8.68311 8.88442 9.35108 10.87076 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.008041 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.571354 B = 3481.393646 C = 3801.748127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.184 3.816 4 H 0.046 0.954 5 C -0.516 4.516 6 H 0.086 0.914 7 C 0.082 3.918 8 N -0.882 5.882 9 Si 0.868 3.132 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.260 1.260 13 O -0.329 6.329 14 C 0.451 3.549 15 O -0.521 6.521 16 C 0.114 3.886 17 C -0.149 4.149 18 C -0.135 4.135 19 C -0.155 4.155 20 C 0.044 3.956 21 O -0.349 6.349 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.270 0.730 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.953 5.512 8.461 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.131 3.869 4 H 0.064 0.936 5 C -0.553 4.553 6 H 0.104 0.896 7 C -0.122 4.122 8 N -0.519 5.519 9 Si 0.694 3.306 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.184 1.184 13 O -0.243 6.243 14 C 0.294 3.706 15 O -0.412 6.412 16 C 0.073 3.927 17 C -0.206 4.206 18 C -0.173 4.173 19 C -0.193 4.193 20 C -0.032 4.032 21 O -0.268 6.268 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.757 5.362 8.091 16.030 hybrid contribution -0.591 0.306 -1.107 1.291 sum -13.348 5.668 6.985 16.096 Atomic orbital electron populations 1.21930 0.97563 0.99760 1.01487 1.22096 0.93542 0.98952 1.02368 1.21069 0.96190 0.88866 0.80804 0.93630 1.20816 0.87917 1.50902 0.95701 0.89599 1.24904 0.94955 0.93822 0.98539 1.69860 1.09472 1.47995 1.24573 0.86985 0.81305 0.79807 0.82541 1.19680 1.20725 1.18397 1.86746 1.33473 1.61426 1.42683 1.23620 0.81030 0.77001 0.88953 1.90594 1.55274 1.59592 1.35746 1.21958 0.87135 0.94320 0.89325 1.22031 1.00705 0.98916 0.98973 1.23109 0.99341 0.93527 1.01304 1.23306 0.96338 0.99575 1.00066 1.23484 0.95245 0.82209 1.02294 1.88621 1.41158 1.19054 1.77924 0.93901 0.92814 0.94037 0.91067 0.91889 0.92041 0.90604 0.90779 0.90942 0.89199 0.89132 0.90168 0.89596 0.89253 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.57 37.16 0.32 -2.65 16 2 C -0.13 -2.98 5.63 -26.73 -0.15 -3.13 16 3 C 0.18 4.75 1.90 -27.88 -0.05 4.69 16 4 H 0.05 1.23 4.31 -51.93 -0.22 1.01 16 5 C -0.52 -15.09 9.25 -34.44 -0.32 -15.41 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 7 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 8 N -0.88 -26.71 13.96 55.43 0.77 -25.94 16 9 Si 0.87 21.83 26.99 -169.99 -4.59 17.25 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.26 -6.36 6.82 56.52 0.39 -5.97 16 13 O -0.33 -8.05 9.60 -44.16 -0.42 -8.48 16 14 C 0.45 9.52 5.28 36.01 0.19 9.71 16 15 O -0.52 -11.59 13.05 -18.75 -0.24 -11.84 16 16 C 0.11 1.85 1.21 -91.04 -0.11 1.74 16 17 C -0.15 -1.96 8.72 37.16 0.32 -1.64 16 18 C -0.14 -1.74 5.75 -24.78 -0.14 -1.89 16 19 C -0.16 -1.57 7.16 -24.48 -0.18 -1.74 16 20 C 0.04 0.56 7.78 38.18 0.30 0.86 16 21 O -0.35 -5.98 10.49 -48.02 -0.50 -6.49 16 22 H 0.04 0.83 6.05 -51.93 -0.31 0.51 16 23 H 0.05 1.11 7.83 -51.93 -0.41 0.70 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 26 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.30 7.35 -51.93 -0.38 0.92 16 32 H 0.09 0.97 7.82 -51.93 -0.41 0.57 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 292.98 15.07 4.42 4.42 Total: -1.00 -32.48 292.98 -6.02 -38.50 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.53 Total: -0.25 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 0.08 Total: -7.17 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.77 Total: -25.94 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -1.17 Total: -26.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.59 Total: 17.25 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.48 -6.02 -38.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787083789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.371 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds