Wall clock time and date at job start Mon Mar 30 2020 04:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47171 * 2 1 4 4 H 1.09001 * 109.47466 * 305.59184 * 3 2 1 5 5 C 1.50705 * 109.47552 * 185.59185 * 3 2 1 6 6 H 1.08000 * 120.00217 * 274.99999 * 5 3 2 7 7 C 1.37873 * 119.99718 * 94.98852 * 5 3 2 8 8 N 1.31517 * 119.99943 * 184.84266 * 7 5 3 9 9 Si 1.86798 * 120.00345 * 4.85059 * 7 5 3 10 10 H 1.48502 * 109.47410 * 84.85791 * 9 7 5 11 11 H 1.48495 * 109.47373 * 204.86291 * 9 7 5 12 12 H 1.48501 * 109.47058 * 324.86259 * 9 7 5 13 13 O 1.45209 * 109.47163 * 65.59503 * 3 2 1 14 14 C 1.34225 * 116.99601 * 269.99822 * 13 3 2 15 15 O 1.20829 * 120.00552 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99962 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.82672 * 275.57169 * 16 14 13 18 18 C 1.54386 * 109.83112 * 154.58957 * 16 14 13 19 19 C 1.55306 * 102.25241 * 219.13678 * 18 16 14 20 20 C 1.54940 * 100.94322 * 34.13242 * 19 18 16 21 21 O 1.43236 * 109.82796 * 36.46197 * 16 14 13 22 22 H 1.09000 * 109.47463 * 300.00079 * 1 2 3 23 23 H 1.09001 * 109.46774 * 60.00575 * 1 2 3 24 24 H 1.09000 * 109.47088 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47463 * 239.99921 * 2 1 3 26 26 H 1.09001 * 109.46774 * 119.99425 * 2 1 3 27 27 H 0.97003 * 120.00356 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.46907 * 59.29336 * 17 16 14 29 29 H 1.08996 * 109.47027 * 179.29603 * 17 16 14 30 30 H 1.08994 * 109.46747 * 299.30033 * 17 16 14 31 31 H 1.09006 * 110.84595 * 337.32413 * 18 16 14 32 32 H 1.08999 * 110.84745 * 100.94006 * 18 16 14 33 33 H 1.09002 * 111.11942 * 276.21533 * 19 18 16 34 34 H 1.08995 * 111.16157 * 152.07405 * 19 18 16 35 35 H 1.08999 * 110.30808 * 204.64266 * 20 19 18 36 36 H 1.08998 * 110.39684 * 82.51897 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9845 -0.8357 5 6 3.5406 1.4448 -0.1384 6 1 4.1639 1.3339 0.7366 7 6 4.1179 1.5883 -1.3823 8 7 5.4229 1.4951 -1.5163 9 14 3.0466 1.9153 -2.8772 10 1 2.7806 3.3722 -2.9865 11 1 3.7467 1.4468 -4.1000 12 1 1.7605 1.1868 -2.7333 13 8 1.6680 2.0874 1.2467 14 6 0.4851 2.7211 1.2756 15 8 -0.2166 2.7361 0.2921 16 6 0.0315 3.4130 2.5353 17 6 -0.6431 2.4043 3.4672 18 6 -0.9562 4.5462 2.1838 19 6 -0.5409 5.6654 3.1773 20 6 0.9888 5.4328 3.2595 21 8 1.1555 4.0076 3.1947 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8932 -0.5138 0.8901 27 1 5.8291 1.5965 -2.3913 28 1 0.0614 1.6100 3.7140 29 1 -0.9575 2.9081 4.3812 30 1 -1.5136 1.9764 2.9702 31 1 -0.8208 4.8729 1.1527 32 1 -1.9851 4.2327 2.3605 33 1 -1.0128 5.5226 4.1494 34 1 -0.7671 6.6527 2.7747 35 1 1.3797 5.8170 4.2017 36 1 1.4915 5.9112 2.4190 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787083789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:43 Heat of formation + Delta-G solvation = -164.949682 kcal Electronic energy + Delta-G solvation = -18702.661966 eV Core-core repulsion = 15764.850628 eV Total energy + Delta-G solvation = -2937.811337 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.94168 -40.13710 -37.70871 -35.36860 -33.98487 -33.49796 -32.53697 -29.81749 -27.27876 -25.53595 -24.45703 -22.91054 -21.91132 -20.99114 -19.45778 -18.52517 -17.96088 -17.45646 -17.12354 -16.41078 -16.20482 -15.11305 -14.94964 -14.86612 -14.42942 -14.07434 -13.91018 -13.65567 -13.59389 -13.36003 -13.11207 -12.94217 -12.83621 -12.73833 -12.48279 -12.06110 -12.01638 -11.90469 -11.77923 -11.50504 -11.37708 -11.08555 -10.83160 -10.57267 -8.50023 -6.59430 1.17996 1.22124 1.23731 1.35414 1.93078 2.16323 2.63385 2.86364 3.40948 3.67097 3.77740 4.02970 4.06139 4.12823 4.22349 4.30349 4.35258 4.54004 4.58236 4.71008 4.74771 4.80813 4.85529 4.96136 4.98534 5.04743 5.07402 5.11368 5.20571 5.31548 5.43795 5.65159 5.86916 6.14758 6.48280 6.90038 7.08994 8.65867 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.008041 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.571354 B = 3481.393646 C = 3801.748127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.186 3.814 4 H 0.035 0.965 5 C -0.534 4.534 6 H 0.042 0.958 7 C 0.034 3.966 8 N -0.923 5.923 9 Si 0.929 3.071 10 H -0.270 1.270 11 H -0.263 1.263 12 H -0.248 1.248 13 O -0.352 6.352 14 C 0.441 3.559 15 O -0.535 6.535 16 C 0.110 3.890 17 C -0.144 4.144 18 C -0.134 4.134 19 C -0.137 4.137 20 C 0.029 3.971 21 O -0.381 6.381 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.276 0.724 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.860 6.214 8.944 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.133 3.867 4 H 0.053 0.947 5 C -0.572 4.572 6 H 0.060 0.940 7 C -0.167 4.167 8 N -0.561 5.561 9 Si 0.751 3.249 10 H -0.195 1.195 11 H -0.188 1.188 12 H -0.172 1.172 13 O -0.267 6.267 14 C 0.285 3.715 15 O -0.427 6.427 16 C 0.069 3.931 17 C -0.201 4.201 18 C -0.172 4.172 19 C -0.174 4.174 20 C -0.047 4.047 21 O -0.301 6.301 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.675 6.068 8.588 18.875 hybrid contribution 0.372 0.134 -1.157 1.222 sum -15.303 6.202 7.431 18.107 Atomic orbital electron populations 1.21820 0.94864 1.01918 1.01060 1.22012 0.95900 0.96614 1.02322 1.20874 0.93908 0.90689 0.81249 0.94688 1.20962 0.89855 1.51687 0.94659 0.93975 1.25684 0.96213 0.93290 1.01480 1.69969 1.11240 1.49077 1.25841 0.86016 0.80019 0.79732 0.79123 1.19541 1.18756 1.17191 1.86709 1.35903 1.62416 1.41701 1.24815 0.79553 0.76270 0.90821 1.90562 1.55261 1.59963 1.36866 1.22290 0.87551 0.95718 0.87535 1.22070 1.00343 0.97987 0.99746 1.23179 0.99873 0.93217 1.00902 1.23312 0.93738 0.99584 1.00771 1.23790 0.97760 0.80085 1.03017 1.88596 1.42349 1.21505 1.77660 0.93819 0.93682 0.90556 0.91309 0.91797 0.91413 0.92309 0.87358 0.89609 0.91410 0.86329 0.87309 0.87330 0.86773 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.57 71.98 0.62 -4.65 16 2 C -0.13 -5.90 5.63 30.59 0.17 -5.72 16 3 C 0.19 9.82 1.90 29.85 0.06 9.88 16 4 H 0.04 1.91 4.31 -2.39 -0.01 1.90 16 5 C -0.53 -32.63 9.25 25.60 0.24 -32.39 16 6 H 0.04 2.85 8.06 -2.91 -0.02 2.83 16 7 C 0.03 2.04 5.47 84.65 0.46 2.50 16 8 N -0.92 -57.55 13.96 21.45 0.30 -57.25 16 9 Si 0.93 45.37 26.99 68.60 1.85 47.22 16 10 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.25 -11.59 6.82 99.48 0.68 -10.91 16 13 O -0.35 -17.70 9.60 -46.67 -0.45 -18.15 16 14 C 0.44 18.58 5.28 71.24 0.38 18.96 16 15 O -0.53 -23.55 13.05 21.95 0.29 -23.26 16 16 C 0.11 3.42 1.21 -11.07 -0.01 3.40 16 17 C -0.14 -3.44 8.72 71.98 0.63 -2.82 16 18 C -0.13 -3.10 5.75 31.86 0.18 -2.91 16 19 C -0.14 -2.25 7.16 32.05 0.23 -2.02 16 20 C 0.03 0.69 7.78 72.65 0.56 1.26 16 21 O -0.38 -12.85 10.49 -136.75 -1.43 -14.28 16 22 H 0.04 1.62 6.05 -2.39 -0.01 1.60 16 23 H 0.04 1.77 7.83 -2.39 -0.02 1.75 16 24 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.07 3.09 8.14 -2.39 -0.02 3.08 16 26 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 27 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.87 7.35 -2.38 -0.02 1.85 16 32 H 0.12 2.06 7.82 -2.39 -0.02 2.04 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -73.63 292.98 5.09 -68.54 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.02 Total: 11.69 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 3.51 Total: -14.51 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.30 Total: -57.25 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -1.60 Total: -55.69 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.85 Total: 47.22 kcal Total: -73.63 5.09 -68.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787083789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.410 kcal (2) G-P(sol) polarization free energy of solvation -73.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds