Wall clock time and date at job start Mon Mar 30 2020 04:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47186 * 2 1 4 4 H 1.09010 * 109.46720 * 55.00920 * 3 2 1 5 5 C 1.50696 * 109.47072 * 174.99883 * 3 2 1 6 6 H 1.08007 * 119.99607 * 120.00248 * 5 3 2 7 7 C 1.37875 * 120.00815 * 300.00550 * 5 3 2 8 8 N 1.31519 * 119.99459 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00423 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47097 * 60.00232 * 9 7 5 11 11 H 1.48503 * 109.46844 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47121 * 299.99806 * 9 7 5 13 13 O 1.45191 * 109.47716 * 295.00538 * 3 2 1 14 14 C 1.34231 * 117.00288 * 89.99830 * 13 3 2 15 15 O 1.20827 * 119.99935 * 359.97438 * 14 13 3 16 16 C 1.50694 * 120.00372 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.99007 * 276.08325 * 16 14 13 18 18 C 1.54099 * 109.88273 * 154.99559 * 16 14 13 19 19 C 1.54806 * 104.19470 * 238.54858 * 18 16 14 20 20 C 1.55002 * 102.08942 * 339.11759 * 19 18 16 21 21 O 1.43889 * 109.94676 * 37.02467 * 16 14 13 22 22 H 1.08999 * 109.47122 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46753 * 299.99190 * 1 2 3 24 24 H 1.08996 * 109.47420 * 59.99127 * 1 2 3 25 25 H 1.09000 * 109.46754 * 240.00286 * 2 1 3 26 26 H 1.08996 * 109.47420 * 120.00873 * 2 1 3 27 27 H 0.97000 * 119.99678 * 180.02562 * 8 7 5 28 28 H 1.08993 * 109.47337 * 298.91173 * 17 16 14 29 29 H 1.08999 * 109.47480 * 58.91712 * 17 16 14 30 30 H 1.09005 * 109.47405 * 178.91413 * 17 16 14 31 31 H 1.09002 * 110.48959 * 119.87002 * 18 16 14 32 32 H 1.09005 * 110.48576 * 357.22289 * 18 16 14 33 33 H 1.08999 * 110.91163 * 220.92334 * 19 18 16 34 34 H 1.08997 * 110.90777 * 97.31144 * 19 18 16 35 35 H 1.09002 * 110.61909 * 155.52577 * 20 19 18 36 36 H 1.09000 * 110.61709 * 278.36474 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8420 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3363 2.1727 9 14 6.0051 0.8799 1.3809 10 1 6.5005 2.2797 1.3807 11 1 6.3980 0.2154 2.6496 12 1 6.5967 0.1451 0.2340 13 8 1.6559 2.0917 -1.2405 14 6 0.4727 2.7256 -1.2557 15 8 -0.2192 2.7370 -0.2653 16 6 0.0069 3.4219 -2.5083 17 6 0.6125 4.8249 -2.5828 18 6 -1.5313 3.5140 -2.5156 19 6 -1.9496 2.7769 -3.8110 20 6 -0.6469 2.8292 -4.6494 21 8 0.3973 2.6623 -3.6663 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8295 -0.0615 2.9496 28 1 0.2831 5.4089 -1.7234 29 1 1.7000 4.7521 -2.5773 30 1 0.2857 5.3135 -3.5008 31 1 -1.8510 4.5555 -2.5491 32 1 -1.9475 3.0141 -1.6409 33 1 -2.7583 3.3055 -4.3156 34 1 -2.2337 1.7464 -3.5978 35 1 -0.6245 2.0162 -5.3750 36 1 -0.5517 3.7924 -5.1508 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787083791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:48 Heat of formation + Delta-G solvation = -144.034883 kcal Electronic energy + Delta-G solvation = -18628.695051 eV Core-core repulsion = 15691.790647 eV Total energy + Delta-G solvation = -2936.904404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.38402 -38.63034 -35.79091 -33.46346 -32.20532 -31.61104 -31.10141 -27.30062 -26.45235 -23.80315 -22.66395 -21.76999 -20.11632 -19.23115 -17.59271 -16.61589 -15.99403 -15.85084 -15.50336 -14.61833 -14.21157 -14.01400 -13.83960 -13.13724 -12.82643 -12.55289 -12.23580 -12.04576 -11.74027 -11.46931 -11.35658 -11.22873 -11.15941 -11.12651 -10.88553 -10.72660 -10.58891 -10.24677 -10.03083 -9.72995 -9.39396 -9.24365 -8.76107 -8.40844 -6.14458 -4.21151 2.90818 3.29183 3.32228 3.34670 3.60253 3.85052 4.35710 4.56469 4.72746 4.87674 5.12761 5.17184 5.23087 5.50535 5.53292 5.60310 5.69031 5.76218 5.90917 5.95720 6.12144 6.23767 6.27483 6.34768 6.50186 6.85140 6.92987 6.99998 7.21236 7.29638 7.65713 7.78225 7.97131 8.20552 8.66966 8.93748 9.43750 10.92390 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.034942 B = 0.006787 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.143388 B = 4124.688028 C = 4437.956227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.218 3.782 4 H 0.046 0.954 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.338 6.338 14 C 0.467 3.533 15 O -0.512 6.512 16 C 0.110 3.890 17 C -0.160 4.160 18 C -0.142 4.142 19 C -0.155 4.155 20 C 0.041 3.959 21 O -0.345 6.345 22 H 0.033 0.967 23 H 0.052 0.948 24 H 0.032 0.968 25 H 0.042 0.958 26 H 0.108 0.892 27 H 0.266 0.734 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.709 5.565 -10.657 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.166 3.834 4 H 0.064 0.936 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.253 6.253 14 C 0.309 3.691 15 O -0.403 6.403 16 C 0.069 3.931 17 C -0.217 4.217 18 C -0.179 4.179 19 C -0.193 4.193 20 C -0.035 4.035 21 O -0.264 6.264 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.126 0.874 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.642 5.308 -10.169 14.362 hybrid contribution 0.684 0.032 0.251 0.729 sum -7.958 5.340 -9.919 13.792 Atomic orbital electron populations 1.21857 0.98486 0.98975 1.00646 1.22003 0.92587 0.99358 1.03350 1.20703 0.95067 0.88893 0.78757 0.93634 1.21022 0.89727 1.38894 1.06171 0.91355 1.24881 0.99209 0.94775 0.95068 1.69887 1.35434 1.37909 1.09501 0.86342 0.83944 0.78471 0.77439 1.20005 1.21045 1.19921 1.86553 1.33727 1.61428 1.43590 1.22863 0.81130 0.76490 0.88600 1.90609 1.55914 1.58393 1.35398 1.21963 0.94736 0.92068 0.84372 1.22194 1.03048 0.93648 1.02828 1.23006 0.92499 1.02405 1.00041 1.23160 0.98403 1.01913 0.95822 1.23612 0.86121 1.01685 0.92125 1.89141 1.43245 1.70048 1.23961 0.94829 0.92913 0.94921 0.93897 0.87365 0.92381 0.90890 0.90464 0.91109 0.89707 0.88474 0.89984 0.90279 0.88704 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.57 37.16 0.32 -2.92 16 2 C -0.14 -3.49 5.49 -26.73 -0.15 -3.63 16 3 C 0.22 6.01 2.25 -27.89 -0.06 5.94 16 4 H 0.05 1.37 7.16 -51.92 -0.37 1.00 16 5 C -0.52 -14.97 8.90 -34.44 -0.31 -15.28 16 6 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -25.52 11.29 55.43 0.63 -24.89 16 9 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 O -0.34 -8.56 9.61 -44.03 -0.42 -8.99 16 14 C 0.47 10.23 5.31 36.00 0.19 10.43 16 15 O -0.51 -11.97 12.73 -18.75 -0.24 -12.20 16 16 C 0.11 1.83 1.14 -91.20 -0.10 1.73 16 17 C -0.16 -2.24 8.59 37.16 0.32 -1.93 16 18 C -0.14 -1.89 6.12 -25.21 -0.15 -2.05 16 19 C -0.16 -1.68 7.16 -24.72 -0.18 -1.86 16 20 C 0.04 0.48 7.66 38.21 0.29 0.77 16 21 O -0.35 -5.87 10.70 -47.41 -0.51 -6.37 16 22 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.05 1.24 7.80 -51.93 -0.40 0.83 16 24 H 0.03 0.72 6.06 -51.93 -0.31 0.41 16 25 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.11 2.99 5.95 -51.93 -0.31 2.68 16 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.07 0.78 8.12 -51.93 -0.42 0.35 16 31 H 0.08 0.91 7.70 -51.93 -0.40 0.52 16 32 H 0.10 1.48 6.78 -51.93 -0.35 1.12 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 LS Contribution 292.45 15.07 4.41 4.41 Total: -1.00 -31.35 292.45 -6.58 -37.93 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.50 Total: 0.85 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 0.08 Total: -7.14 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.63 Total: -24.89 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -1.17 Total: -27.56 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.35 -6.58 -37.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787083791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.102 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds