Wall clock time and date at job start Mon Mar 30 2020 04:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47186 * 2 1 4 4 H 1.09010 * 109.46720 * 55.00920 * 3 2 1 5 5 C 1.50696 * 109.47072 * 174.99883 * 3 2 1 6 6 H 1.08007 * 119.99607 * 120.00248 * 5 3 2 7 7 C 1.37875 * 120.00815 * 300.00550 * 5 3 2 8 8 N 1.31519 * 119.99459 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00423 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47097 * 60.00232 * 9 7 5 11 11 H 1.48503 * 109.46844 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47121 * 299.99806 * 9 7 5 13 13 O 1.45191 * 109.47716 * 295.00538 * 3 2 1 14 14 C 1.34231 * 117.00288 * 89.99830 * 13 3 2 15 15 O 1.20827 * 119.99935 * 359.97438 * 14 13 3 16 16 C 1.50694 * 120.00372 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.99007 * 276.08325 * 16 14 13 18 18 C 1.54099 * 109.88273 * 154.99559 * 16 14 13 19 19 C 1.54806 * 104.19470 * 238.54858 * 18 16 14 20 20 C 1.55002 * 102.08942 * 339.11759 * 19 18 16 21 21 O 1.43889 * 109.94676 * 37.02467 * 16 14 13 22 22 H 1.08999 * 109.47122 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46753 * 299.99190 * 1 2 3 24 24 H 1.08996 * 109.47420 * 59.99127 * 1 2 3 25 25 H 1.09000 * 109.46754 * 240.00286 * 2 1 3 26 26 H 1.08996 * 109.47420 * 120.00873 * 2 1 3 27 27 H 0.97000 * 119.99678 * 180.02562 * 8 7 5 28 28 H 1.08993 * 109.47337 * 298.91173 * 17 16 14 29 29 H 1.08999 * 109.47480 * 58.91712 * 17 16 14 30 30 H 1.09005 * 109.47405 * 178.91413 * 17 16 14 31 31 H 1.09002 * 110.48959 * 119.87002 * 18 16 14 32 32 H 1.09005 * 110.48576 * 357.22289 * 18 16 14 33 33 H 1.08999 * 110.91163 * 220.92334 * 19 18 16 34 34 H 1.08997 * 110.90777 * 97.31144 * 19 18 16 35 35 H 1.09002 * 110.61909 * 155.52577 * 20 19 18 36 36 H 1.09000 * 110.61709 * 278.36474 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8420 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3363 2.1727 9 14 6.0051 0.8799 1.3809 10 1 6.5005 2.2797 1.3807 11 1 6.3980 0.2154 2.6496 12 1 6.5967 0.1451 0.2340 13 8 1.6559 2.0917 -1.2405 14 6 0.4727 2.7256 -1.2557 15 8 -0.2192 2.7370 -0.2653 16 6 0.0069 3.4219 -2.5083 17 6 0.6125 4.8249 -2.5828 18 6 -1.5313 3.5140 -2.5156 19 6 -1.9496 2.7769 -3.8110 20 6 -0.6469 2.8292 -4.6494 21 8 0.3973 2.6623 -3.6663 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8295 -0.0615 2.9496 28 1 0.2831 5.4089 -1.7234 29 1 1.7000 4.7521 -2.5773 30 1 0.2857 5.3135 -3.5008 31 1 -1.8510 4.5555 -2.5491 32 1 -1.9475 3.0141 -1.6409 33 1 -2.7583 3.3055 -4.3156 34 1 -2.2337 1.7464 -3.5978 35 1 -0.6245 2.0162 -5.3750 36 1 -0.5517 3.7924 -5.1508 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787083791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:48 Heat of formation + Delta-G solvation = -163.356651 kcal Electronic energy + Delta-G solvation = -18629.532905 eV Core-core repulsion = 15691.790647 eV Total energy + Delta-G solvation = -2937.742258 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.90021 -40.09749 -37.68631 -35.53235 -33.50746 -33.29204 -32.41825 -29.37991 -27.52840 -25.64328 -24.39761 -22.74532 -21.96515 -20.87822 -19.21906 -18.59174 -17.70704 -17.27003 -16.95535 -16.54279 -15.58254 -15.40140 -14.95311 -14.84437 -14.65176 -13.97030 -13.68607 -13.43267 -13.37214 -13.19607 -13.09014 -12.84447 -12.77960 -12.59920 -12.33150 -12.20625 -12.09980 -11.79923 -11.70302 -11.49155 -11.37658 -10.85571 -10.69673 -10.52614 -8.29197 -6.46471 1.21337 1.39653 1.43925 1.51872 1.96976 2.39459 2.73300 2.99778 3.47469 3.67214 3.82967 4.06651 4.15148 4.31693 4.32796 4.35530 4.49918 4.54216 4.64366 4.73604 4.80331 4.82822 4.91207 5.01392 5.04587 5.11990 5.17187 5.17930 5.33614 5.48542 5.63275 5.77850 5.94250 6.09947 6.57179 6.95132 7.25062 8.77645 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.034942 B = 0.006787 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.143388 B = 4124.688028 C = 4437.956227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.222 3.778 4 H 0.007 0.993 5 C -0.554 4.554 6 H 0.062 0.938 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.268 1.268 11 H -0.274 1.274 12 H -0.265 1.265 13 O -0.355 6.355 14 C 0.455 3.545 15 O -0.534 6.534 16 C 0.111 3.889 17 C -0.156 4.156 18 C -0.140 4.140 19 C -0.147 4.147 20 C 0.033 3.967 21 O -0.381 6.381 22 H 0.063 0.937 23 H 0.038 0.962 24 H 0.033 0.967 25 H 0.041 0.959 26 H 0.089 0.911 27 H 0.272 0.728 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.141 6.286 -12.362 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.025 0.975 5 C -0.591 4.591 6 H 0.080 0.920 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.804 3.196 10 H -0.193 1.193 11 H -0.198 1.198 12 H -0.190 1.190 13 O -0.271 6.271 14 C 0.298 3.702 15 O -0.426 6.426 16 C 0.070 3.930 17 C -0.214 4.214 18 C -0.178 4.178 19 C -0.184 4.184 20 C -0.042 4.042 21 O -0.300 6.300 22 H 0.082 0.918 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.101 6.036 -11.892 16.146 hybrid contribution 0.747 -0.177 0.760 1.081 sum -8.354 5.860 -11.131 15.101 Atomic orbital electron populations 1.21696 0.96211 1.00670 0.99938 1.21855 0.94584 0.98116 1.02156 1.20407 0.94660 0.89386 0.78672 0.97498 1.21296 0.90555 1.40284 1.06965 0.91982 1.25812 1.04399 0.93698 0.94215 1.70003 1.37569 1.37777 1.09837 0.85260 0.77484 0.78865 0.77972 1.19287 1.19843 1.19019 1.86551 1.35953 1.62303 1.42266 1.24167 0.79661 0.75694 0.90635 1.90579 1.56009 1.59007 1.36978 1.22166 0.96839 0.92099 0.81941 1.22229 1.01679 0.92300 1.05154 1.23066 0.89672 1.04558 1.00459 1.23177 0.99185 1.01598 0.94438 1.23976 0.84931 1.03917 0.91376 1.89102 1.45568 1.70547 1.24827 0.91818 0.94311 0.94837 0.94047 0.89318 0.91912 0.90385 0.92511 0.87033 0.86466 0.90950 0.86078 0.91300 0.87320 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.92 8.57 71.98 0.62 -5.30 16 2 C -0.13 -6.89 5.49 30.59 0.17 -6.72 16 3 C 0.22 12.79 2.25 29.85 0.07 12.86 16 4 H 0.01 0.46 7.16 -2.38 -0.02 0.44 16 5 C -0.55 -32.96 8.90 25.60 0.23 -32.74 16 6 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 7 C 0.02 1.06 5.29 84.65 0.45 1.50 16 8 N -0.91 -53.57 11.29 21.45 0.24 -53.33 16 9 Si 0.98 44.07 29.54 68.60 2.03 46.09 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 O -0.36 -18.74 9.61 -46.87 -0.45 -19.19 16 14 C 0.45 20.49 5.31 71.23 0.38 20.87 16 15 O -0.53 -25.93 12.73 21.96 0.28 -25.65 16 16 C 0.11 3.60 1.14 -11.17 -0.01 3.58 16 17 C -0.16 -4.14 8.59 71.98 0.62 -3.52 16 18 C -0.14 -3.44 6.12 31.58 0.19 -3.25 16 19 C -0.15 -2.69 7.16 31.90 0.23 -2.47 16 20 C 0.03 0.67 7.66 72.67 0.56 1.23 16 21 O -0.38 -12.50 10.70 -137.33 -1.47 -13.96 16 22 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 23 H 0.04 1.87 7.80 -2.39 -0.02 1.85 16 24 H 0.03 1.51 6.06 -2.39 -0.01 1.49 16 25 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.09 5.08 5.95 -2.39 -0.01 5.06 16 27 H 0.27 14.84 8.31 -92.71 -0.77 14.06 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.11 2.02 8.12 -2.38 -0.02 2.00 16 31 H 0.12 2.09 7.70 -2.39 -0.02 2.07 16 32 H 0.07 2.16 6.78 -2.38 -0.02 2.14 16 33 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 1.85 8.14 -2.39 -0.02 1.84 16 36 H 0.09 1.31 8.12 -2.39 -0.02 1.29 16 Total: -1.00 -71.11 292.45 5.17 -65.94 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.05 Total: 14.06 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 3.49 Total: -13.96 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.24 Total: -53.33 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: -1.64 Total: -58.80 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -71.11 5.17 -65.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787083791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.416 kcal (2) G-P(sol) polarization free energy of solvation -71.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds