Wall clock time and date at job start Mon Mar 30 2020 04:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46828 * 2 1 4 4 H 1.08998 * 109.47226 * 304.99696 * 3 2 1 5 5 C 1.50700 * 109.47092 * 184.99775 * 3 2 1 6 6 H 1.07997 * 120.00432 * 239.99932 * 5 3 2 7 7 C 1.37880 * 120.00005 * 60.00181 * 5 3 2 8 8 N 1.31517 * 119.99818 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00048 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46956 * 89.99934 * 9 7 5 11 11 H 1.48498 * 109.46965 * 209.99541 * 9 7 5 12 12 H 1.48491 * 109.47460 * 329.99919 * 9 7 5 13 13 O 1.45197 * 109.47470 * 64.99813 * 3 2 1 14 14 C 1.34232 * 117.00109 * 270.00091 * 13 3 2 15 15 O 1.20822 * 119.99786 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99748 * 179.97438 * 14 13 3 17 17 H 1.08997 * 110.75124 * 56.52899 * 16 14 13 18 18 C 1.54382 * 111.02269 * 292.92800 * 16 14 13 19 19 O 1.43237 * 107.59016 * 220.37503 * 18 16 14 20 20 C 1.43646 * 109.97033 * 358.29496 * 19 18 16 21 21 H 1.09006 * 110.30867 * 265.50652 * 20 19 18 22 22 C 1.53002 * 110.31012 * 143.34138 * 20 19 18 23 23 C 1.54947 * 105.13731 * 24.42410 * 20 19 18 24 24 H 1.09000 * 109.46908 * 60.00108 * 1 2 3 25 25 H 1.09004 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47183 * 300.00280 * 1 2 3 27 27 H 1.08995 * 109.47489 * 240.00104 * 2 1 3 28 28 H 1.08998 * 109.47160 * 119.99409 * 2 1 3 29 29 H 0.96994 * 119.99795 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.83043 * 339.89508 * 18 16 14 31 31 H 1.09003 * 109.82718 * 100.86219 * 18 16 14 32 32 H 1.08993 * 109.47158 * 304.28442 * 22 20 19 33 33 H 1.09001 * 109.47265 * 64.28811 * 22 20 19 34 34 H 1.09002 * 109.47064 * 184.28485 * 22 20 19 35 35 H 1.09003 * 111.12327 * 205.63595 * 23 20 19 36 36 H 1.08996 * 111.12316 * 81.47686 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3367 -2.1728 9 14 6.0049 0.8815 -1.3817 10 1 6.5549 -0.3500 -0.7601 11 1 6.3829 0.9225 -2.8172 12 1 6.5569 2.0740 -0.6902 13 8 1.6558 2.0917 1.2406 14 6 0.4726 2.7255 1.2559 15 8 -0.2189 2.7377 0.2652 16 6 0.0069 3.4217 2.5087 17 1 0.7395 4.1595 2.8356 18 6 -0.2865 2.4037 3.6316 19 8 -1.4750 2.8333 4.3057 20 6 -1.9458 4.0640 3.7337 21 1 -1.5642 4.9143 4.2991 22 6 -3.4754 4.0863 3.7069 23 6 -1.3822 4.0811 2.2905 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.8294 -0.0617 -2.9494 30 1 -0.4421 1.4140 3.2021 31 1 0.5473 2.3766 4.3331 32 1 -3.8422 3.2106 3.1714 33 1 -3.8570 4.0740 4.7279 34 1 -3.8169 4.9901 3.2023 35 1 -1.2791 5.1014 1.9211 36 1 -2.0001 3.4833 1.6205 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787085917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:23 Heat of formation + Delta-G solvation = -150.811342 kcal Electronic energy + Delta-G solvation = -18219.949921 eV Core-core repulsion = 15282.751668 eV Total energy + Delta-G solvation = -2937.198253 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.28110 -38.81007 -35.85038 -33.55962 -32.37911 -31.85231 -31.27821 -27.38374 -26.11022 -23.94791 -22.88233 -21.25005 -20.38661 -19.31204 -17.37241 -16.87519 -16.52669 -15.84257 -15.11874 -15.06809 -14.62624 -14.11511 -13.75215 -12.96164 -12.93725 -12.78465 -12.52905 -12.07809 -11.89187 -11.49170 -11.42862 -11.28380 -11.14277 -11.02766 -10.98034 -10.90031 -10.65116 -10.30492 -9.83994 -9.73130 -9.46680 -9.36663 -8.84405 -8.48086 -6.21071 -4.28418 2.88878 3.22861 3.28089 3.31236 3.47550 3.83296 4.30758 4.35893 4.77454 4.94309 5.05824 5.10452 5.14648 5.23946 5.52061 5.59290 5.70939 5.80207 5.86197 5.93915 6.04146 6.17537 6.21339 6.27038 6.43028 6.83616 6.93289 6.95691 7.13496 7.21971 7.58839 7.70567 7.91063 8.12658 8.58614 8.85124 9.36985 10.85683 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.044233 B = 0.005586 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.855132 B = 5010.969098 C = 5217.030954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.353 6.353 14 C 0.463 3.537 15 O -0.511 6.511 16 C -0.123 4.123 17 H 0.115 0.885 18 C 0.069 3.931 19 O -0.379 6.379 20 C 0.075 3.925 21 H 0.072 0.928 22 C -0.150 4.150 23 C -0.136 4.136 24 H 0.053 0.947 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.266 0.734 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 5.701 9.453 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.270 6.270 14 C 0.305 3.695 15 O -0.401 6.401 16 C -0.143 4.143 17 H 0.133 0.867 18 C -0.008 4.008 19 O -0.299 6.299 20 C 0.018 3.982 21 H 0.090 0.910 22 C -0.208 4.208 23 C -0.173 4.173 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.495 5.466 9.110 13.602 hybrid contribution 1.110 0.023 -0.491 1.214 sum -7.385 5.488 8.619 12.607 Atomic orbital electron populations 1.21865 0.98380 0.99072 1.00674 1.22024 0.92609 0.99325 1.03435 1.20705 0.95071 0.88803 0.78579 0.93519 1.21040 0.89641 1.39076 1.06275 0.91329 1.24886 0.99264 0.94729 0.95027 1.69888 1.35407 1.37740 1.09507 0.86278 0.83850 0.78696 0.77354 1.20322 1.20960 1.19640 1.86481 1.33969 1.62274 1.44229 1.22745 0.80961 0.76983 0.88850 1.90607 1.55518 1.58343 1.35621 1.22561 0.99254 0.98882 0.93573 0.86673 1.22976 0.87908 0.97166 0.92747 1.88411 1.42614 1.40261 1.58627 1.22992 0.95252 0.87498 0.92481 0.90973 1.21877 0.93605 1.02703 1.02574 1.23298 0.94156 1.02450 0.97407 0.92823 0.94728 0.95052 0.87287 0.93922 0.92360 0.90617 0.89959 0.91708 0.91936 0.91165 0.89350 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.57 37.16 0.32 -2.80 16 2 C -0.14 -3.35 5.49 -26.73 -0.15 -3.50 16 3 C 0.22 5.81 2.25 -27.88 -0.06 5.74 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -14.48 8.90 -34.44 -0.31 -14.79 16 6 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.88 11.29 55.43 0.63 -24.26 16 9 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 O -0.35 -8.22 9.81 -39.26 -0.39 -8.60 16 14 C 0.46 9.36 5.60 36.01 0.20 9.56 16 15 O -0.51 -11.50 12.84 -18.75 -0.24 -11.74 16 16 C -0.12 -1.84 3.49 -89.82 -0.31 -2.16 16 17 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 18 C 0.07 0.98 7.40 37.88 0.28 1.26 16 19 O -0.38 -5.34 11.04 -35.23 -0.39 -5.73 16 20 C 0.07 0.86 4.07 -25.70 -0.10 0.76 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 22 C -0.15 -1.45 9.62 37.16 0.36 -1.09 16 23 C -0.14 -1.76 5.69 -24.48 -0.14 -1.89 16 24 H 0.05 1.23 7.80 -51.93 -0.40 0.82 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 27 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 28 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.08 1.17 7.81 -51.93 -0.41 0.77 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 1.40 7.29 -51.93 -0.38 1.02 16 LS Contribution 293.68 15.07 4.43 4.43 Total: -1.00 -29.80 293.68 -6.53 -36.33 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.53 Total: 1.03 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -0.01 Total: -7.29 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.63 Total: -24.26 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -1.01 Total: -26.08 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.80 -6.53 -36.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.484 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds