Wall clock time and date at job start Mon Mar 30 2020 04:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46828 * 2 1 4 4 H 1.08998 * 109.47226 * 304.99696 * 3 2 1 5 5 C 1.50700 * 109.47092 * 184.99775 * 3 2 1 6 6 H 1.07997 * 120.00432 * 239.99932 * 5 3 2 7 7 C 1.37880 * 120.00005 * 60.00181 * 5 3 2 8 8 N 1.31517 * 119.99818 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00048 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46956 * 89.99934 * 9 7 5 11 11 H 1.48498 * 109.46965 * 209.99541 * 9 7 5 12 12 H 1.48491 * 109.47460 * 329.99919 * 9 7 5 13 13 O 1.45197 * 109.47470 * 64.99813 * 3 2 1 14 14 C 1.34232 * 117.00109 * 270.00091 * 13 3 2 15 15 O 1.20822 * 119.99786 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99748 * 179.97438 * 14 13 3 17 17 H 1.08997 * 110.75124 * 56.52899 * 16 14 13 18 18 C 1.54382 * 111.02269 * 292.92800 * 16 14 13 19 19 O 1.43237 * 107.59016 * 220.37503 * 18 16 14 20 20 C 1.43646 * 109.97033 * 358.29496 * 19 18 16 21 21 H 1.09006 * 110.30867 * 265.50652 * 20 19 18 22 22 C 1.53002 * 110.31012 * 143.34138 * 20 19 18 23 23 C 1.54947 * 105.13731 * 24.42410 * 20 19 18 24 24 H 1.09000 * 109.46908 * 60.00108 * 1 2 3 25 25 H 1.09004 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47183 * 300.00280 * 1 2 3 27 27 H 1.08995 * 109.47489 * 240.00104 * 2 1 3 28 28 H 1.08998 * 109.47160 * 119.99409 * 2 1 3 29 29 H 0.96994 * 119.99795 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.83043 * 339.89508 * 18 16 14 31 31 H 1.09003 * 109.82718 * 100.86219 * 18 16 14 32 32 H 1.08993 * 109.47158 * 304.28442 * 22 20 19 33 33 H 1.09001 * 109.47265 * 64.28811 * 22 20 19 34 34 H 1.09002 * 109.47064 * 184.28485 * 22 20 19 35 35 H 1.09003 * 111.12327 * 205.63595 * 23 20 19 36 36 H 1.08996 * 111.12316 * 81.47686 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3367 -2.1728 9 14 6.0049 0.8815 -1.3817 10 1 6.5549 -0.3500 -0.7601 11 1 6.3829 0.9225 -2.8172 12 1 6.5569 2.0740 -0.6902 13 8 1.6558 2.0917 1.2406 14 6 0.4726 2.7255 1.2559 15 8 -0.2189 2.7377 0.2652 16 6 0.0069 3.4217 2.5087 17 1 0.7395 4.1595 2.8356 18 6 -0.2865 2.4037 3.6316 19 8 -1.4750 2.8333 4.3057 20 6 -1.9458 4.0640 3.7337 21 1 -1.5642 4.9143 4.2991 22 6 -3.4754 4.0863 3.7069 23 6 -1.3822 4.0811 2.2905 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.8294 -0.0617 -2.9494 30 1 -0.4421 1.4140 3.2021 31 1 0.5473 2.3766 4.3331 32 1 -3.8422 3.2106 3.1714 33 1 -3.8570 4.0740 4.7279 34 1 -3.8169 4.9901 3.2023 35 1 -1.2791 5.1014 1.9211 36 1 -2.0001 3.4833 1.6205 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787085917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:23 Heat of formation + Delta-G solvation = -168.481240 kcal Electronic energy + Delta-G solvation = -18220.716145 eV Core-core repulsion = 15282.751668 eV Total energy + Delta-G solvation = -2937.964477 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.77285 -40.13999 -37.66206 -35.53659 -33.64001 -33.26119 -32.73705 -29.36379 -27.12403 -25.63589 -24.59585 -22.25091 -22.10700 -21.01227 -18.88811 -18.66517 -18.00475 -17.34596 -16.82101 -16.57206 -16.10787 -15.45063 -14.89273 -14.71470 -14.66396 -14.19483 -13.47972 -13.40160 -13.37799 -13.26093 -13.14191 -12.91016 -12.80358 -12.57238 -12.30812 -12.16898 -12.08549 -11.87193 -11.78124 -11.47036 -11.27955 -10.85381 -10.55295 -10.51251 -8.28478 -6.45524 1.27090 1.41765 1.43454 1.54413 1.92905 2.39518 2.77877 3.01294 3.22122 3.74804 3.81026 3.92686 4.13074 4.19881 4.33832 4.35849 4.42990 4.53977 4.63272 4.68477 4.78150 4.81404 4.87764 4.96333 5.05896 5.15701 5.18301 5.31530 5.35559 5.50241 5.64950 5.94143 5.97217 6.10912 6.59073 6.94983 7.26147 8.78268 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.044233 B = 0.005586 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.855132 B = 5010.969098 C = 5217.030954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.224 3.776 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.266 1.266 13 O -0.361 6.361 14 C 0.457 3.543 15 O -0.538 6.538 16 C -0.118 4.118 17 H 0.143 0.857 18 C 0.073 3.927 19 O -0.391 6.391 20 C 0.074 3.926 21 H 0.099 0.901 22 C -0.149 4.149 23 C -0.133 4.133 24 H 0.035 0.965 25 H 0.061 0.939 26 H 0.035 0.965 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.270 0.730 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 6.521 10.891 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.171 3.829 4 H 0.025 0.975 5 C -0.588 4.588 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.804 3.196 10 H -0.193 1.193 11 H -0.203 1.203 12 H -0.190 1.190 13 O -0.277 6.277 14 C 0.301 3.699 15 O -0.429 6.429 16 C -0.137 4.137 17 H 0.160 0.840 18 C -0.004 4.004 19 O -0.312 6.312 20 C 0.018 3.982 21 H 0.117 0.883 22 C -0.207 4.207 23 C -0.171 4.171 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.054 0.946 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.275 6.294 10.565 14.823 hybrid contribution 0.950 -0.192 -0.945 1.353 sum -7.326 6.102 9.620 13.544 Atomic orbital electron populations 1.21716 0.96360 1.00597 1.00000 1.21870 0.94359 0.98158 1.02397 1.20388 0.94598 0.89279 0.78614 0.97522 1.21333 0.90494 1.40056 1.06930 0.91547 1.25795 1.04206 0.93839 0.94326 1.70011 1.37452 1.37868 1.09905 0.85213 0.77723 0.79117 0.77559 1.19262 1.20345 1.18983 1.86470 1.35828 1.62881 1.42556 1.23809 0.79567 0.76138 0.90404 1.90595 1.55849 1.59160 1.37260 1.22725 1.00856 0.99170 0.90933 0.83973 1.22924 0.88750 0.95986 0.92748 1.88408 1.42460 1.41597 1.58699 1.23231 0.96343 0.87308 0.91323 0.88349 1.21908 0.92310 1.03134 1.03306 1.23342 0.92467 1.02918 0.98345 0.94562 0.92024 0.94573 0.89532 0.93519 0.92030 0.92516 0.88141 0.93086 0.90936 0.89110 0.87333 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 8.57 71.98 0.62 -5.10 16 2 C -0.13 -6.55 5.49 30.60 0.17 -6.38 16 3 C 0.22 12.17 2.25 29.85 0.07 12.23 16 4 H 0.01 0.43 7.16 -2.39 -0.02 0.41 16 5 C -0.55 -31.07 8.90 25.60 0.23 -30.84 16 6 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.00 5.29 84.65 0.45 1.44 16 8 N -0.91 -52.16 11.29 21.45 0.24 -51.91 16 9 Si 0.98 42.58 29.54 68.60 2.03 44.61 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 13 O -0.36 -17.04 9.81 -51.44 -0.50 -17.54 16 14 C 0.46 18.59 5.60 71.24 0.40 18.99 16 15 O -0.54 -24.81 12.84 21.98 0.28 -24.53 16 16 C -0.12 -3.35 3.49 -10.28 -0.04 -3.38 16 17 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 18 C 0.07 1.97 7.40 72.45 0.54 2.50 16 19 O -0.39 -10.21 11.04 -148.98 -1.64 -11.86 16 20 C 0.07 1.51 4.07 31.26 0.13 1.64 16 21 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 22 C -0.15 -2.53 9.62 71.98 0.69 -1.83 16 23 C -0.13 -3.21 5.69 32.05 0.18 -3.03 16 24 H 0.04 1.69 7.80 -2.39 -0.02 1.67 16 25 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 26 H 0.04 1.52 6.06 -2.39 -0.01 1.51 16 27 H 0.09 4.77 5.95 -2.39 -0.01 4.76 16 28 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.06 1.74 7.81 -2.39 -0.02 1.72 16 31 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.07 2.13 7.29 -2.39 -0.02 2.11 16 Total: -1.00 -65.30 293.68 4.88 -60.42 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.05 Total: 14.57 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 3.43 Total: -13.76 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.24 Total: -51.91 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -1.87 Total: -53.93 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -65.30 4.88 -60.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.063 kcal (2) G-P(sol) polarization free energy of solvation -65.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds