Wall clock time and date at job start Mon Mar 30 2020 04:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46778 * 2 1 4 4 H 1.09008 * 109.46722 * 305.24190 * 3 2 1 5 5 C 1.50700 * 109.46827 * 185.24575 * 3 2 1 6 6 H 1.08007 * 119.99583 * 245.44533 * 5 3 2 7 7 C 1.37872 * 120.00401 * 65.45287 * 5 3 2 8 8 N 1.31509 * 119.99890 * 9.49733 * 7 5 3 9 9 Si 1.86800 * 119.99941 * 189.50036 * 7 5 3 10 10 H 1.48495 * 109.47057 * 84.99207 * 9 7 5 11 11 H 1.48498 * 109.46952 * 204.99103 * 9 7 5 12 12 H 1.48494 * 109.47028 * 324.99141 * 9 7 5 13 13 O 1.45201 * 109.47483 * 65.23870 * 3 2 1 14 14 C 1.34229 * 117.00341 * 270.00042 * 13 3 2 15 15 O 1.20832 * 119.99540 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00047 * 179.97438 * 14 13 3 17 17 H 1.08996 * 110.80185 * 56.36930 * 16 14 13 18 18 C 1.55004 * 110.90827 * 292.70957 * 16 14 13 19 19 O 1.44381 * 103.48866 * 204.78086 * 18 16 14 20 20 C 1.43738 * 106.97839 * 40.05472 * 19 18 16 21 21 H 1.09009 * 110.00464 * 92.97983 * 20 19 18 22 22 C 1.52998 * 109.88195 * 214.06287 * 20 19 18 23 23 C 1.54103 * 107.29576 * 333.49104 * 20 19 18 24 24 H 1.08999 * 109.46890 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47823 * 300.00419 * 1 2 3 26 26 H 1.08997 * 109.47287 * 60.00410 * 1 2 3 27 27 H 1.08995 * 109.47523 * 240.00032 * 2 1 3 28 28 H 1.09001 * 109.46971 * 119.99230 * 2 1 3 29 29 H 0.97001 * 120.00311 * 179.97438 * 8 7 5 30 30 H 1.09007 * 110.61232 * 323.27370 * 18 16 14 31 31 H 1.08992 * 110.62067 * 86.11680 * 18 16 14 32 32 H 1.08996 * 109.47098 * 177.83031 * 22 20 19 33 33 H 1.08997 * 109.46647 * 57.83303 * 22 20 19 34 34 H 1.09002 * 109.46797 * 297.83500 * 22 20 19 35 35 H 1.09001 * 110.49149 * 120.70100 * 23 20 19 36 36 H 1.09001 * 110.48478 * 243.21933 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6018 1.9827 -0.8394 5 6 3.5413 1.4446 -0.1299 6 1 4.1531 1.8079 0.6826 7 6 4.1339 0.9828 -1.2860 8 7 3.3965 0.7168 -2.3419 9 14 5.9842 0.7348 -1.3523 10 1 6.3236 -0.6059 -0.8117 11 1 6.4465 0.8324 -2.7601 12 1 6.6533 1.7809 -0.5379 13 8 1.6607 2.0901 1.2431 14 6 0.4776 2.7238 1.2639 15 8 -0.2183 2.7366 0.2762 16 6 0.0168 3.4182 2.5194 17 1 0.7515 4.1538 2.8468 18 6 -0.2777 2.3918 3.6430 19 8 -1.2244 3.0802 4.4883 20 6 -2.1266 3.7860 3.6200 21 1 -3.0025 3.1711 3.4129 22 6 -2.5570 5.1004 4.2743 23 6 -1.3687 4.0763 2.3100 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.8135 0.3923 -3.1554 30 1 -0.7208 1.4861 3.2288 31 1 0.6319 2.1551 4.1947 32 1 -3.2100 5.6478 3.5947 33 1 -1.6753 5.7022 4.4947 34 1 -3.0921 4.8874 5.1997 35 1 -1.8827 3.6220 1.4631 36 1 -1.2641 5.1509 2.1600 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787085919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:26 Heat of formation + Delta-G solvation = -151.876118 kcal Electronic energy + Delta-G solvation = -18199.577435 eV Core-core repulsion = 15262.333010 eV Total energy + Delta-G solvation = -2937.244425 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.28318 -38.81650 -35.85746 -33.51575 -32.38210 -31.81604 -31.36090 -27.38064 -26.00588 -23.97223 -22.94812 -21.35469 -20.34728 -19.35992 -17.52912 -16.73168 -16.05819 -15.85002 -15.47109 -15.02869 -14.74595 -14.21092 -13.57482 -13.06147 -12.88142 -12.78472 -12.45653 -12.18340 -11.97293 -11.59210 -11.42008 -11.27567 -11.13643 -11.00607 -10.91641 -10.79282 -10.64763 -10.27891 -9.91574 -9.74107 -9.62930 -9.40594 -8.87519 -8.49021 -6.23018 -4.26987 2.89827 3.23736 3.28767 3.31162 3.46082 3.96206 4.32492 4.44435 4.71290 4.94889 5.09152 5.10895 5.14847 5.24211 5.49958 5.63451 5.72771 5.80342 5.90176 5.91815 6.04760 6.10197 6.13755 6.19882 6.35415 6.78282 6.83078 6.90437 7.07913 7.14896 7.53938 7.64705 7.83927 8.09680 8.58828 8.86619 9.37338 10.85965 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.042539 B = 0.005572 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.062252 B = 5023.685182 C = 5214.761654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.054 0.946 5 C -0.526 4.526 6 H 0.069 0.931 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.907 3.093 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.353 6.353 14 C 0.461 3.539 15 O -0.512 6.512 16 C -0.121 4.121 17 H 0.116 0.884 18 C 0.065 3.935 19 O -0.372 6.372 20 C 0.071 3.929 21 H 0.070 0.930 22 C -0.150 4.150 23 C -0.142 4.142 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.267 0.733 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.431 4.530 9.799 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.166 3.834 4 H 0.072 0.928 5 C -0.564 4.564 6 H 0.087 0.913 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.734 3.266 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.269 6.269 14 C 0.304 3.696 15 O -0.402 6.402 16 C -0.141 4.141 17 H 0.134 0.866 18 C -0.012 4.012 19 O -0.292 6.292 20 C 0.013 3.987 21 H 0.088 0.912 22 C -0.207 4.207 23 C -0.180 4.180 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.596 4.437 9.505 13.562 hybrid contribution 0.958 -0.217 -0.569 1.135 sum -7.638 4.220 8.936 12.490 Atomic orbital electron populations 1.21866 0.98099 0.99165 1.00955 1.21923 0.92944 0.99407 1.02322 1.20707 0.95298 0.88578 0.78800 0.92828 1.20983 0.89539 1.44022 1.01844 0.91310 1.24890 0.99102 0.95098 0.94607 1.69984 1.36000 1.43984 1.02220 0.86358 0.84019 0.78935 0.77268 1.20209 1.21059 1.19654 1.86476 1.33986 1.62300 1.44110 1.22809 0.80941 0.76922 0.88963 1.90601 1.55280 1.58401 1.35925 1.22534 0.99035 0.99059 0.93445 0.86611 1.23427 0.93522 0.93892 0.90351 1.88873 1.43972 1.65804 1.30527 1.22771 0.92932 0.93743 0.89224 0.91230 1.21934 1.01838 0.95828 1.01125 1.23036 0.93840 1.02216 0.98894 0.94669 0.94803 0.92634 0.89223 0.93584 0.92361 0.91572 0.87481 0.91246 0.91795 0.92014 0.88493 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.57 37.16 0.32 -2.72 16 2 C -0.13 -3.07 5.54 -26.73 -0.15 -3.22 16 3 C 0.22 5.71 2.11 -27.88 -0.06 5.65 16 4 H 0.05 1.57 7.10 -51.92 -0.37 1.20 16 5 C -0.53 -14.56 8.82 -34.44 -0.30 -14.86 16 6 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 7 C 0.07 1.80 5.16 -17.82 -0.09 1.71 16 8 N -0.88 -25.02 12.16 55.43 0.67 -24.34 16 9 Si 0.91 20.86 29.55 -169.99 -5.02 15.84 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 O -0.35 -8.14 9.81 -39.26 -0.39 -8.52 16 14 C 0.46 9.27 5.74 36.00 0.21 9.48 16 15 O -0.51 -11.44 12.60 -18.75 -0.24 -11.68 16 16 C -0.12 -1.83 3.63 -89.76 -0.33 -2.15 16 17 H 0.12 1.59 8.14 -51.93 -0.42 1.16 16 18 C 0.06 0.90 7.16 38.22 0.27 1.17 16 19 O -0.37 -5.11 11.19 -35.23 -0.39 -5.51 16 20 C 0.07 0.83 4.05 -26.16 -0.11 0.73 16 21 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 22 C -0.15 -1.40 9.36 37.16 0.35 -1.05 16 23 C -0.14 -1.86 6.06 -25.20 -0.15 -2.01 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.68 6.05 -51.93 -0.31 0.37 16 26 H 0.05 1.24 7.81 -51.93 -0.41 0.84 16 27 H 0.09 2.33 6.80 -51.93 -0.35 1.98 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 31 H 0.11 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 1.40 6.86 -51.93 -0.36 1.05 16 36 H 0.08 0.97 7.70 -51.93 -0.40 0.57 16 LS Contribution 294.46 15.07 4.44 4.44 Total: -1.00 -29.74 294.46 -6.51 -36.25 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.54 Total: 0.82 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.04 Total: -7.28 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.67 Total: -24.34 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -1.02 Total: -25.71 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.74 -6.51 -36.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.631 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds