Wall clock time and date at job start Mon Mar 30 2020 04:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46778 * 2 1 4 4 H 1.09008 * 109.46722 * 305.24190 * 3 2 1 5 5 C 1.50700 * 109.46827 * 185.24575 * 3 2 1 6 6 H 1.08007 * 119.99583 * 245.44533 * 5 3 2 7 7 C 1.37872 * 120.00401 * 65.45287 * 5 3 2 8 8 N 1.31509 * 119.99890 * 9.49733 * 7 5 3 9 9 Si 1.86800 * 119.99941 * 189.50036 * 7 5 3 10 10 H 1.48495 * 109.47057 * 84.99207 * 9 7 5 11 11 H 1.48498 * 109.46952 * 204.99103 * 9 7 5 12 12 H 1.48494 * 109.47028 * 324.99141 * 9 7 5 13 13 O 1.45201 * 109.47483 * 65.23870 * 3 2 1 14 14 C 1.34229 * 117.00341 * 270.00042 * 13 3 2 15 15 O 1.20832 * 119.99540 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00047 * 179.97438 * 14 13 3 17 17 H 1.08996 * 110.80185 * 56.36930 * 16 14 13 18 18 C 1.55004 * 110.90827 * 292.70957 * 16 14 13 19 19 O 1.44381 * 103.48866 * 204.78086 * 18 16 14 20 20 C 1.43738 * 106.97839 * 40.05472 * 19 18 16 21 21 H 1.09009 * 110.00464 * 92.97983 * 20 19 18 22 22 C 1.52998 * 109.88195 * 214.06287 * 20 19 18 23 23 C 1.54103 * 107.29576 * 333.49104 * 20 19 18 24 24 H 1.08999 * 109.46890 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47823 * 300.00419 * 1 2 3 26 26 H 1.08997 * 109.47287 * 60.00410 * 1 2 3 27 27 H 1.08995 * 109.47523 * 240.00032 * 2 1 3 28 28 H 1.09001 * 109.46971 * 119.99230 * 2 1 3 29 29 H 0.97001 * 120.00311 * 179.97438 * 8 7 5 30 30 H 1.09007 * 110.61232 * 323.27370 * 18 16 14 31 31 H 1.08992 * 110.62067 * 86.11680 * 18 16 14 32 32 H 1.08996 * 109.47098 * 177.83031 * 22 20 19 33 33 H 1.08997 * 109.46647 * 57.83303 * 22 20 19 34 34 H 1.09002 * 109.46797 * 297.83500 * 22 20 19 35 35 H 1.09001 * 110.49149 * 120.70100 * 23 20 19 36 36 H 1.09001 * 110.48478 * 243.21933 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6018 1.9827 -0.8394 5 6 3.5413 1.4446 -0.1299 6 1 4.1531 1.8079 0.6826 7 6 4.1339 0.9828 -1.2860 8 7 3.3965 0.7168 -2.3419 9 14 5.9842 0.7348 -1.3523 10 1 6.3236 -0.6059 -0.8117 11 1 6.4465 0.8324 -2.7601 12 1 6.6533 1.7809 -0.5379 13 8 1.6607 2.0901 1.2431 14 6 0.4776 2.7238 1.2639 15 8 -0.2183 2.7366 0.2762 16 6 0.0168 3.4182 2.5194 17 1 0.7515 4.1538 2.8468 18 6 -0.2777 2.3918 3.6430 19 8 -1.2244 3.0802 4.4883 20 6 -2.1266 3.7860 3.6200 21 1 -3.0025 3.1711 3.4129 22 6 -2.5570 5.1004 4.2743 23 6 -1.3687 4.0763 2.3100 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.8135 0.3923 -3.1554 30 1 -0.7208 1.4861 3.2288 31 1 0.6319 2.1551 4.1947 32 1 -3.2100 5.6478 3.5947 33 1 -1.6753 5.7022 4.4947 34 1 -3.0921 4.8874 5.1997 35 1 -1.8827 3.6220 1.4631 36 1 -1.2641 5.1509 2.1600 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787085919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:25 Heat of formation + Delta-G solvation = -169.455609 kcal Electronic energy + Delta-G solvation = -18200.339739 eV Core-core repulsion = 15262.333010 eV Total energy + Delta-G solvation = -2938.006729 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.76972 -40.14509 -37.65468 -35.48178 -33.66268 -33.31731 -32.67887 -29.34706 -27.00388 -25.62003 -24.63946 -22.54246 -21.92555 -20.98152 -19.11440 -18.62424 -17.64300 -17.33121 -16.73424 -16.45665 -16.28233 -15.71454 -14.91283 -14.68214 -14.63876 -14.03576 -13.52179 -13.45695 -13.38023 -13.22872 -13.14204 -12.97734 -12.81799 -12.55446 -12.33111 -12.17118 -11.89260 -11.88307 -11.71921 -11.49052 -11.21729 -10.84364 -10.75662 -10.56453 -8.31174 -6.44425 1.28161 1.41507 1.43709 1.53659 1.92414 2.39391 2.87900 3.00443 3.30365 3.69103 3.84404 3.96501 4.10860 4.16523 4.32430 4.34673 4.43859 4.52812 4.61039 4.68782 4.82326 4.82737 4.93023 4.96180 5.05336 5.10298 5.17318 5.32056 5.32302 5.51045 5.59088 5.82782 5.87978 6.11052 6.60418 6.96170 7.26385 8.78194 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.042539 B = 0.005572 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.062252 B = 5023.685182 C = 5214.761654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.121 4.121 3 C 0.222 3.778 4 H 0.011 0.989 5 C -0.553 4.553 6 H 0.066 0.934 7 C 0.021 3.979 8 N -0.915 5.915 9 Si 0.977 3.023 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.265 1.265 13 O -0.360 6.360 14 C 0.457 3.543 15 O -0.538 6.538 16 C -0.117 4.117 17 H 0.134 0.866 18 C 0.069 3.931 19 O -0.378 6.378 20 C 0.069 3.931 21 H 0.076 0.924 22 C -0.146 4.146 23 C -0.139 4.139 24 H 0.064 0.936 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.270 0.730 30 H 0.060 0.940 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.355 4.828 11.267 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.159 4.159 3 C 0.169 3.831 4 H 0.029 0.971 5 C -0.590 4.590 6 H 0.084 0.916 7 C -0.179 4.179 8 N -0.553 5.553 9 Si 0.800 3.200 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.190 1.190 13 O -0.276 6.276 14 C 0.301 3.699 15 O -0.429 6.429 16 C -0.136 4.136 17 H 0.152 0.848 18 C -0.008 4.008 19 O -0.298 6.298 20 C 0.011 3.989 21 H 0.094 0.906 22 C -0.203 4.203 23 C -0.176 4.176 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.541 4.745 10.992 14.707 hybrid contribution 0.856 -0.258 -1.033 1.366 sum -7.686 4.487 9.960 13.357 Atomic orbital electron populations 1.21724 0.95986 1.00846 1.00274 1.21769 0.94780 0.97881 1.01506 1.20400 0.94684 0.89307 0.78714 0.97109 1.21292 0.90508 1.44919 1.02285 0.91558 1.25785 1.03983 0.94264 0.93916 1.70101 1.38106 1.44297 1.02778 0.85291 0.77959 0.79280 0.77492 1.19102 1.20500 1.18961 1.86464 1.35797 1.62912 1.42447 1.23790 0.79583 0.76089 0.90395 1.90592 1.55629 1.59175 1.37471 1.22680 1.00433 0.99421 0.91074 0.84803 1.23408 0.94164 0.93255 0.89999 1.88880 1.44130 1.65977 1.30789 1.22932 0.92493 0.95001 0.88433 0.90619 1.21939 1.02279 0.94459 1.01649 1.23064 0.92447 1.02970 0.99133 0.91723 0.94117 0.94611 0.91571 0.92638 0.92073 0.92180 0.86287 0.89494 0.91667 0.91341 0.90201 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 8.57 71.98 0.62 -4.94 16 2 C -0.12 -5.91 5.54 30.60 0.17 -5.74 16 3 C 0.22 11.93 2.11 29.85 0.06 11.99 16 4 H 0.01 0.68 7.10 -2.38 -0.02 0.66 16 5 C -0.55 -31.10 8.82 25.60 0.23 -30.87 16 6 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 7 C 0.02 1.15 5.16 84.65 0.44 1.58 16 8 N -0.92 -52.76 12.16 21.44 0.26 -52.50 16 9 Si 0.98 42.61 29.55 68.60 2.03 44.64 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 13 O -0.36 -16.81 9.81 -51.41 -0.50 -17.31 16 14 C 0.46 18.46 5.74 71.23 0.41 18.87 16 15 O -0.54 -24.56 12.60 21.95 0.28 -24.29 16 16 C -0.12 -3.37 3.63 -10.24 -0.04 -3.41 16 17 H 0.13 3.40 8.14 -2.39 -0.02 3.39 16 18 C 0.07 1.79 7.16 72.67 0.52 2.31 16 19 O -0.38 -9.54 11.19 -148.98 -1.67 -11.21 16 20 C 0.07 1.46 4.05 30.97 0.13 1.59 16 21 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 22 C -0.15 -2.31 9.36 71.98 0.67 -1.63 16 23 C -0.14 -3.40 6.06 31.58 0.19 -3.21 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.04 1.63 6.05 -2.39 -0.01 1.62 16 26 H 0.03 1.63 7.81 -2.39 -0.02 1.61 16 27 H 0.07 3.52 6.80 -2.39 -0.02 3.51 16 28 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.06 1.64 8.04 -2.38 -0.02 1.62 16 31 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 2.26 6.86 -2.39 -0.02 2.25 16 36 H 0.10 2.12 7.70 -2.39 -0.02 2.10 16 Total: -1.00 -64.68 294.46 4.84 -59.84 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.05 Total: 14.29 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 3.39 Total: -13.45 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.26 Total: -52.50 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -1.89 Total: -52.81 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -64.68 4.84 -59.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.617 kcal (2) G-P(sol) polarization free energy of solvation -64.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds