Wall clock time and date at job start Mon Mar 30 2020 04:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46635 * 2 1 4 4 H 1.08998 * 109.47190 * 304.99517 * 3 2 1 5 5 C 1.50702 * 109.46774 * 185.00346 * 3 2 1 6 6 H 1.08008 * 119.99438 * 239.99910 * 5 3 2 7 7 C 1.37871 * 120.00579 * 59.99588 * 5 3 2 8 8 N 1.31522 * 119.99762 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00435 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46668 * 90.00068 * 9 7 5 11 11 H 1.48497 * 109.47079 * 210.00241 * 9 7 5 12 12 H 1.48494 * 109.47050 * 330.00198 * 9 7 5 13 13 O 1.45193 * 109.47554 * 65.00319 * 3 2 1 14 14 C 1.34238 * 116.99756 * 269.99897 * 13 3 2 15 15 O 1.20820 * 120.00091 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99798 * 179.97438 * 14 13 3 17 17 H 1.08993 * 110.80484 * 297.82572 * 16 14 13 18 18 C 1.55001 * 110.90796 * 61.45467 * 16 14 13 19 19 O 1.44375 * 103.49068 * 155.21990 * 18 16 14 20 20 C 1.43746 * 106.97596 * 319.93701 * 19 18 16 21 21 H 1.08999 * 109.88266 * 266.93669 * 20 19 18 22 22 C 1.53006 * 109.88023 * 145.93639 * 20 19 18 23 23 C 1.54102 * 107.41946 * 26.43968 * 20 19 18 24 24 H 1.08997 * 109.47511 * 59.99979 * 1 2 3 25 25 H 1.09007 * 109.46829 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47380 * 299.99611 * 1 2 3 27 27 H 1.09001 * 109.46810 * 239.99922 * 2 1 3 28 28 H 1.08999 * 109.47060 * 119.99772 * 2 1 3 29 29 H 0.96994 * 119.99977 * 179.97438 * 8 7 5 30 30 H 1.08996 * 110.61608 * 36.71530 * 18 16 14 31 31 H 1.09000 * 110.61371 * 273.72054 * 18 16 14 32 32 H 1.09001 * 109.47002 * 61.70684 * 22 20 19 33 33 H 1.08993 * 109.46955 * 181.71121 * 22 20 19 34 34 H 1.09000 * 109.47050 * 301.70950 * 22 20 19 35 35 H 1.09000 * 110.48659 * 116.72044 * 23 20 19 36 36 H 1.09000 * 110.48872 * 239.36675 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8814 -1.3819 10 1 6.5548 -0.3500 -0.7602 11 1 6.3828 0.9225 -2.8174 12 1 6.5568 2.0740 -0.6903 13 8 1.6558 2.0917 1.2406 14 6 0.4726 2.7254 1.2559 15 8 -0.2190 2.7377 0.2653 16 6 0.0068 3.4216 2.5087 17 1 -0.1165 2.7093 3.3244 18 6 0.9854 4.5556 2.9077 19 8 0.1607 5.4568 3.6772 20 6 -1.1149 5.5248 3.0181 21 1 -1.1284 6.3637 2.3223 22 6 -2.2280 5.6909 4.0546 23 6 -1.3079 4.2033 2.2492 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0604 -2.9502 30 1 1.3760 5.0550 2.0211 31 1 1.7987 4.1634 3.5183 32 1 -2.0821 6.6244 4.5980 33 1 -3.1940 5.7111 3.5503 34 1 -2.2007 4.8553 4.7541 35 1 -2.1630 3.6541 2.6432 36 1 -1.4353 4.3966 1.1841 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787085922.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:28 Heat of formation + Delta-G solvation = -150.451804 kcal Electronic energy + Delta-G solvation = -18161.582750 eV Core-core repulsion = 15224.400088 eV Total energy + Delta-G solvation = -2937.182662 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25355 -38.81167 -35.85906 -33.56223 -32.36308 -31.81009 -31.22238 -27.37932 -25.99947 -23.96505 -22.89954 -21.35325 -20.30842 -19.34736 -17.48825 -16.63860 -16.19592 -15.92983 -15.36855 -14.94862 -14.72344 -14.22836 -13.55643 -13.17236 -12.89448 -12.54951 -12.47394 -12.09784 -12.01804 -11.58691 -11.42085 -11.23319 -11.11157 -11.00515 -10.89802 -10.75644 -10.66352 -10.29656 -9.83325 -9.72008 -9.61952 -9.38757 -8.84605 -8.48130 -6.21109 -4.28465 2.90581 3.23033 3.28269 3.31385 3.46958 3.98584 4.31808 4.43203 4.71817 4.95944 5.10661 5.11411 5.16867 5.24747 5.51027 5.65785 5.74357 5.83067 5.91346 5.93971 6.04924 6.10650 6.19166 6.25782 6.42234 6.83188 6.85638 6.92491 7.12900 7.21594 7.58718 7.70166 7.90890 8.12432 8.58733 8.85158 9.37035 10.85658 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.035211 B = 0.005942 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.019614 B = 4711.209321 C = 5269.514154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.353 6.353 14 C 0.461 3.539 15 O -0.513 6.513 16 C -0.121 4.121 17 H 0.115 0.885 18 C 0.064 3.936 19 O -0.373 6.373 20 C 0.070 3.930 21 H 0.070 0.930 22 C -0.150 4.150 23 C -0.140 4.140 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.266 0.734 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.746 6.214 9.052 13.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.269 6.269 14 C 0.304 3.696 15 O -0.403 6.403 16 C -0.141 4.141 17 H 0.133 0.867 18 C -0.012 4.012 19 O -0.293 6.293 20 C 0.012 3.988 21 H 0.088 0.912 22 C -0.207 4.207 23 C -0.178 4.178 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.835 6.208 8.734 13.274 hybrid contribution 0.795 -0.344 -0.489 0.995 sum -7.040 5.865 8.245 12.326 Atomic orbital electron populations 1.21861 0.98403 0.99028 1.00685 1.22027 0.92611 0.99371 1.03419 1.20701 0.95082 0.88784 0.78605 0.93519 1.21040 0.89626 1.39046 1.06277 0.91302 1.24884 0.99258 0.94728 0.95032 1.69890 1.35404 1.37807 1.09472 0.86283 0.83859 0.78709 0.77360 1.20334 1.20966 1.19606 1.86480 1.33947 1.62253 1.44212 1.22820 0.80966 0.76959 0.88892 1.90598 1.55523 1.58480 1.35688 1.22604 0.96764 0.98611 0.96075 0.86667 1.23449 0.93301 0.87814 0.96681 1.88876 1.23875 1.66159 1.50352 1.22775 0.84741 0.97176 0.94070 0.91232 1.21933 0.96992 1.02720 0.99054 1.23073 0.96548 0.95030 1.03110 0.92814 0.94775 0.95043 0.87290 0.93940 0.92369 0.91319 0.87440 0.92000 0.91276 0.91846 0.89799 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.57 37.16 0.32 -2.78 16 2 C -0.14 -3.35 5.49 -26.73 -0.15 -3.50 16 3 C 0.22 5.78 2.25 -27.88 -0.06 5.71 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -14.40 8.90 -34.44 -0.31 -14.71 16 6 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.83 11.30 55.43 0.63 -24.21 16 9 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 O -0.35 -8.15 9.79 -39.28 -0.38 -8.53 16 14 C 0.46 9.28 5.73 36.01 0.21 9.48 16 15 O -0.51 -11.46 12.65 -18.75 -0.24 -11.69 16 16 C -0.12 -1.82 3.64 -89.59 -0.33 -2.15 16 17 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 18 C 0.06 0.92 7.15 38.21 0.27 1.19 16 19 O -0.37 -5.23 11.19 -35.23 -0.39 -5.62 16 20 C 0.07 0.83 4.05 -26.15 -0.11 0.73 16 21 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 22 C -0.15 -1.41 9.36 37.16 0.35 -1.06 16 23 C -0.14 -1.83 6.03 -25.03 -0.15 -1.98 16 24 H 0.05 1.22 7.80 -51.93 -0.40 0.82 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 27 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.07 1.03 8.04 -51.93 -0.42 0.61 16 31 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.95 7.70 -51.93 -0.40 0.55 16 36 H 0.10 1.39 6.96 -51.93 -0.36 1.03 16 LS Contribution 293.15 15.07 4.42 4.42 Total: -1.00 -29.50 293.15 -6.55 -36.05 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.51 Total: 1.22 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -0.05 Total: -7.44 kcal Atomic # 7 Polarization: -24.83 SS G_CDS: 0.63 Total: -24.21 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.02 Total: -25.85 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.50 -6.55 -36.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085922.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.403 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds