Wall clock time and date at job start Mon Mar 30 2020 04:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46635 * 2 1 4 4 H 1.08998 * 109.47190 * 304.99517 * 3 2 1 5 5 C 1.50702 * 109.46774 * 185.00346 * 3 2 1 6 6 H 1.08008 * 119.99438 * 239.99910 * 5 3 2 7 7 C 1.37871 * 120.00579 * 59.99588 * 5 3 2 8 8 N 1.31522 * 119.99762 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00435 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46668 * 90.00068 * 9 7 5 11 11 H 1.48497 * 109.47079 * 210.00241 * 9 7 5 12 12 H 1.48494 * 109.47050 * 330.00198 * 9 7 5 13 13 O 1.45193 * 109.47554 * 65.00319 * 3 2 1 14 14 C 1.34238 * 116.99756 * 269.99897 * 13 3 2 15 15 O 1.20820 * 120.00091 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99798 * 179.97438 * 14 13 3 17 17 H 1.08993 * 110.80484 * 297.82572 * 16 14 13 18 18 C 1.55001 * 110.90796 * 61.45467 * 16 14 13 19 19 O 1.44375 * 103.49068 * 155.21990 * 18 16 14 20 20 C 1.43746 * 106.97596 * 319.93701 * 19 18 16 21 21 H 1.08999 * 109.88266 * 266.93669 * 20 19 18 22 22 C 1.53006 * 109.88023 * 145.93639 * 20 19 18 23 23 C 1.54102 * 107.41946 * 26.43968 * 20 19 18 24 24 H 1.08997 * 109.47511 * 59.99979 * 1 2 3 25 25 H 1.09007 * 109.46829 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47380 * 299.99611 * 1 2 3 27 27 H 1.09001 * 109.46810 * 239.99922 * 2 1 3 28 28 H 1.08999 * 109.47060 * 119.99772 * 2 1 3 29 29 H 0.96994 * 119.99977 * 179.97438 * 8 7 5 30 30 H 1.08996 * 110.61608 * 36.71530 * 18 16 14 31 31 H 1.09000 * 110.61371 * 273.72054 * 18 16 14 32 32 H 1.09001 * 109.47002 * 61.70684 * 22 20 19 33 33 H 1.08993 * 109.46955 * 181.71121 * 22 20 19 34 34 H 1.09000 * 109.47050 * 301.70950 * 22 20 19 35 35 H 1.09000 * 110.48659 * 116.72044 * 23 20 19 36 36 H 1.09000 * 110.48872 * 239.36675 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8814 -1.3819 10 1 6.5548 -0.3500 -0.7602 11 1 6.3828 0.9225 -2.8174 12 1 6.5568 2.0740 -0.6903 13 8 1.6558 2.0917 1.2406 14 6 0.4726 2.7254 1.2559 15 8 -0.2190 2.7377 0.2653 16 6 0.0068 3.4216 2.5087 17 1 -0.1165 2.7093 3.3244 18 6 0.9854 4.5556 2.9077 19 8 0.1607 5.4568 3.6772 20 6 -1.1149 5.5248 3.0181 21 1 -1.1284 6.3637 2.3223 22 6 -2.2280 5.6909 4.0546 23 6 -1.3079 4.2033 2.2492 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0604 -2.9502 30 1 1.3760 5.0550 2.0211 31 1 1.7987 4.1634 3.5183 32 1 -2.0821 6.6244 4.5980 33 1 -3.1940 5.7111 3.5503 34 1 -2.2007 4.8553 4.7541 35 1 -2.1630 3.6541 2.6432 36 1 -1.4353 4.3966 1.1841 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787085922.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:28 Heat of formation + Delta-G solvation = -167.746403 kcal Electronic energy + Delta-G solvation = -18162.332700 eV Core-core repulsion = 15224.400088 eV Total energy + Delta-G solvation = -2937.932612 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.75344 -40.15140 -37.66275 -35.52979 -33.61847 -33.27703 -32.63781 -29.35643 -27.00232 -25.64323 -24.58699 -22.55538 -21.89492 -20.99111 -19.10329 -18.54548 -17.65545 -17.51025 -16.58973 -16.47620 -16.27731 -15.66620 -15.03139 -14.80824 -14.44174 -13.90881 -13.63665 -13.40508 -13.34722 -13.23729 -13.11024 -12.96715 -12.82932 -12.55375 -12.33133 -12.16570 -11.90060 -11.83105 -11.75246 -11.45700 -11.21651 -10.84356 -10.76328 -10.52944 -8.28077 -6.44865 1.28476 1.42019 1.43474 1.54461 1.92553 2.39587 2.88272 3.01972 3.28201 3.68566 3.85433 3.97066 4.11150 4.15050 4.35660 4.38298 4.43314 4.56817 4.61138 4.69258 4.81936 4.82551 4.93414 4.95388 5.07095 5.10291 5.19747 5.32017 5.37076 5.50970 5.66025 5.82603 5.96630 6.11580 6.59730 6.95801 7.26807 8.78626 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.035211 B = 0.005942 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.019614 B = 4711.209321 C = 5269.514154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 C 0.224 3.776 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.979 3.021 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.266 1.266 13 O -0.360 6.360 14 C 0.457 3.543 15 O -0.538 6.538 16 C -0.115 4.115 17 H 0.140 0.860 18 C 0.067 3.933 19 O -0.379 6.379 20 C 0.066 3.934 21 H 0.073 0.927 22 C -0.145 4.145 23 C -0.136 4.136 24 H 0.035 0.965 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.270 0.730 30 H 0.055 0.945 31 H 0.119 0.881 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.926 6.372 10.521 14.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.169 4.169 3 C 0.171 3.829 4 H 0.025 0.975 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.803 3.197 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.190 1.190 13 O -0.276 6.276 14 C 0.301 3.699 15 O -0.429 6.429 16 C -0.134 4.134 17 H 0.158 0.842 18 C -0.010 4.010 19 O -0.299 6.299 20 C 0.009 3.991 21 H 0.091 0.909 22 C -0.202 4.202 23 C -0.173 4.173 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.037 6.378 10.219 14.481 hybrid contribution 0.781 -0.342 -0.960 1.284 sum -7.256 6.036 9.259 13.222 Atomic orbital electron populations 1.21716 0.96215 1.00656 1.00115 1.21878 0.94535 0.98099 1.02390 1.20386 0.94570 0.89315 0.78617 0.97547 1.21335 0.90531 1.39961 1.06905 0.91549 1.25777 1.04120 0.93877 0.94356 1.70011 1.37408 1.37959 1.09865 0.85232 0.77843 0.79114 0.77543 1.19241 1.20383 1.19029 1.86470 1.35771 1.62851 1.42535 1.23806 0.79613 0.76136 0.90326 1.90588 1.55888 1.59222 1.37197 1.22753 0.97861 0.98966 0.93847 0.84243 1.23404 0.93561 0.87527 0.96536 1.88883 1.24676 1.65922 1.50373 1.22954 0.84748 0.96508 0.94901 0.90916 1.21933 0.96637 1.03160 0.98486 1.23099 0.96197 0.95641 1.02369 0.94585 0.91970 0.94319 0.89589 0.93493 0.92054 0.92667 0.86335 0.91451 0.89422 0.91495 0.87580 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 8.57 71.98 0.62 -4.99 16 2 C -0.13 -6.54 5.49 30.59 0.17 -6.37 16 3 C 0.22 12.08 2.25 29.85 0.07 12.15 16 4 H 0.01 0.41 7.16 -2.39 -0.02 0.39 16 5 C -0.55 -30.90 8.90 25.60 0.23 -30.67 16 6 H 0.07 3.66 7.81 -2.91 -0.02 3.63 16 7 C 0.02 1.01 5.29 84.65 0.45 1.46 16 8 N -0.91 -52.02 11.30 21.45 0.24 -51.78 16 9 Si 0.98 42.58 29.54 68.60 2.03 44.61 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 13 O -0.36 -16.84 9.79 -51.49 -0.50 -17.35 16 14 C 0.46 18.43 5.73 71.24 0.41 18.84 16 15 O -0.54 -24.50 12.65 21.98 0.28 -24.22 16 16 C -0.12 -3.31 3.64 -10.12 -0.04 -3.35 16 17 H 0.14 3.38 8.14 -2.39 -0.02 3.36 16 18 C 0.07 1.83 7.15 72.67 0.52 2.35 16 19 O -0.38 -9.90 11.19 -148.98 -1.67 -11.57 16 20 C 0.07 1.44 4.05 30.97 0.13 1.57 16 21 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 22 C -0.15 -2.29 9.36 71.98 0.67 -1.62 16 23 C -0.14 -3.31 6.03 31.70 0.19 -3.12 16 24 H 0.03 1.65 7.80 -2.39 -0.02 1.63 16 25 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 26 H 0.04 1.58 6.06 -2.38 -0.01 1.56 16 27 H 0.09 4.70 5.95 -2.39 -0.01 4.69 16 28 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.06 1.65 8.04 -2.39 -0.02 1.63 16 31 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.11 2.11 7.70 -2.39 -0.02 2.09 16 36 H 0.08 2.20 6.96 -2.39 -0.02 2.19 16 Total: -1.00 -64.10 293.15 4.84 -59.26 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.05 Total: 14.78 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 3.41 Total: -13.74 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.24 Total: -51.78 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -1.89 Total: -53.13 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -64.10 4.84 -59.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085922.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.482 kcal (2) G-P(sol) polarization free energy of solvation -64.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds