Wall clock time and date at job start Mon Mar 30 2020 04:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46898 * 2 1 4 4 H 1.08996 * 109.47511 * 58.76032 * 3 2 1 5 5 C 1.50704 * 109.47005 * 178.75876 * 3 2 1 6 6 H 1.08003 * 120.00002 * 114.69608 * 5 3 2 7 7 C 1.37872 * 120.00118 * 294.69761 * 5 3 2 8 8 N 1.31523 * 119.99876 * 164.03896 * 7 5 3 9 9 Si 1.86800 * 120.00238 * 344.03610 * 7 5 3 10 10 H 1.48503 * 109.47158 * 270.00229 * 9 7 5 11 11 H 1.48500 * 109.46833 * 30.00050 * 9 7 5 12 12 H 1.48492 * 109.47165 * 150.00170 * 9 7 5 13 13 O 1.45197 * 109.47068 * 298.75847 * 3 2 1 14 14 C 1.34231 * 117.00092 * 90.00444 * 13 3 2 15 15 O 1.20826 * 119.99486 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00190 * 180.02562 * 14 13 3 17 17 C 1.53000 * 113.00240 * 162.41278 * 16 14 13 18 18 C 1.52995 * 109.47131 * 295.89283 * 17 16 14 19 19 C 1.54039 * 113.81944 * 30.42368 * 16 14 13 20 20 O 1.44175 * 85.51965 * 223.19715 * 19 16 14 21 21 C 1.44177 * 93.34035 * 24.19556 * 20 19 16 22 22 H 1.09003 * 109.47129 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47485 * 300.00151 * 1 2 3 24 24 H 1.09000 * 109.47356 * 60.00412 * 1 2 3 25 25 H 1.08992 * 109.47411 * 239.99977 * 2 1 3 26 26 H 1.09009 * 109.46863 * 119.99285 * 2 1 3 27 27 H 0.96998 * 119.99825 * 354.90328 * 8 7 5 28 28 H 1.09003 * 109.46946 * 55.89023 * 17 16 14 29 29 H 1.09000 * 109.47161 * 175.89009 * 17 16 14 30 30 H 1.08999 * 109.47209 * 304.54535 * 18 17 16 31 31 H 1.09005 * 109.47205 * 64.54375 * 18 17 16 32 32 H 1.09004 * 109.47114 * 184.54394 * 18 17 16 33 33 H 1.08998 * 113.86084 * 337.34604 * 19 16 14 34 34 H 1.08997 * 113.86344 * 109.04918 * 19 16 14 35 35 H 1.09003 * 113.86284 * 221.66145 * 21 20 19 36 36 H 1.09003 * 113.86838 * 89.95231 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6585 1.9628 0.8786 5 6 3.5466 1.4427 0.0308 6 1 4.1039 1.8273 -0.8106 7 6 4.2137 0.9517 1.1330 8 7 5.4929 0.6573 1.0502 9 14 3.3007 0.7046 2.7439 10 1 3.3843 1.9454 3.5555 11 1 1.8765 0.3921 2.4627 12 1 3.9156 -0.4198 3.4939 13 8 1.5802 2.1183 -1.2001 14 6 0.3988 2.7515 -1.1283 15 8 -0.2305 2.7409 -0.0970 16 6 -0.1430 3.4745 -2.3344 17 6 -1.6418 3.7652 -2.2338 18 6 -2.4161 2.4460 -2.2013 19 6 0.2837 2.8515 -3.6769 20 8 0.5104 4.2092 -4.1057 21 6 0.6994 4.6918 -2.7603 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 5.9496 0.7150 0.1964 28 1 -1.8425 4.3268 -1.3214 29 1 -1.9572 4.3504 -3.0975 30 1 -2.1533 1.8488 -3.0744 31 1 -2.1603 1.8968 -1.2951 32 1 -3.4863 2.6525 -2.2110 33 1 1.1913 2.2510 -3.6157 34 1 -0.5259 2.3507 -4.2078 35 1 0.2194 5.6506 -2.5642 36 1 1.7340 4.6532 -2.4192 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787085968.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:11 Heat of formation + Delta-G solvation = -112.517450 kcal Electronic energy + Delta-G solvation = -18776.534564 eV Core-core repulsion = 15840.996859 eV Total energy + Delta-G solvation = -2935.537705 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.18434 -39.19421 -36.16311 -33.61618 -33.50200 -31.96010 -29.06662 -27.58664 -26.63284 -23.38429 -23.15236 -22.26900 -20.21122 -18.90223 -17.81991 -17.17186 -16.53570 -16.20880 -15.87709 -15.14291 -14.16717 -14.02033 -13.83193 -13.34411 -13.07737 -12.83303 -12.62032 -12.45195 -12.10451 -11.92755 -11.70673 -11.36725 -11.13980 -11.06251 -10.95147 -10.71502 -10.62410 -10.08108 -9.80519 -9.71356 -9.59770 -9.41417 -8.86670 -8.46356 -6.67372 -4.29614 2.62629 3.30469 3.32192 3.35962 3.49276 3.64196 4.19514 4.34420 4.56479 4.96257 5.05668 5.17585 5.34833 5.40857 5.45586 5.52221 5.55856 5.82295 5.84633 5.88707 5.90488 5.98844 6.03151 6.05048 6.12524 6.24633 6.42419 6.58223 6.73859 6.76146 7.11970 7.34081 7.77120 8.20295 8.42557 8.79062 9.38045 10.74053 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.030911 B = 0.007924 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.598035 B = 3532.895024 C = 3969.534129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.202 3.798 4 H 0.039 0.961 5 C -0.608 4.608 6 H 0.069 0.931 7 C 0.042 3.958 8 N -0.893 5.893 9 Si 1.032 2.968 10 H -0.281 1.281 11 H -0.267 1.267 12 H -0.280 1.280 13 O -0.342 6.342 14 C 0.459 3.541 15 O -0.511 6.511 16 C -0.133 4.133 17 C -0.088 4.088 18 C -0.157 4.157 19 C 0.055 3.945 20 O -0.376 6.376 21 C 0.059 3.941 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.273 0.727 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.916 3.705 -6.470 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.148 3.852 4 H 0.057 0.943 5 C -0.646 4.646 6 H 0.087 0.913 7 C -0.164 4.164 8 N -0.526 5.526 9 Si 0.858 3.142 10 H -0.207 1.207 11 H -0.192 1.192 12 H -0.205 1.205 13 O -0.258 6.258 14 C 0.301 3.699 15 O -0.400 6.400 16 C -0.134 4.134 17 C -0.125 4.125 18 C -0.214 4.214 19 C -0.022 4.022 20 O -0.295 6.295 21 C -0.018 4.018 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.825 3.338 -4.817 14.100 hybrid contribution -0.133 0.300 -1.269 1.311 sum -12.958 3.638 -6.086 14.771 Atomic orbital electron populations 1.21930 0.97475 0.99903 1.01416 1.22350 0.93807 0.99353 1.02424 1.20981 0.95341 0.87664 0.81200 0.94287 1.21938 0.88381 1.47446 1.06810 0.91315 1.25640 0.96122 0.92589 1.02059 1.70812 1.10145 1.42386 1.29210 0.84279 0.76184 0.77830 0.75864 1.20734 1.19186 1.20520 1.86499 1.33837 1.61508 1.43920 1.23048 0.80681 0.77169 0.88961 1.90574 1.58877 1.58513 1.32051 1.23867 0.98606 0.97562 0.93364 1.21169 0.89173 0.98966 1.03194 1.21830 0.99797 0.97180 1.02638 1.24089 1.01674 0.86171 0.90261 1.89659 1.92844 1.21143 1.25836 1.23973 0.99925 0.96338 0.81534 0.94038 0.92491 0.94022 0.92013 0.90909 0.91712 0.90220 0.90293 0.92777 0.91529 0.92209 0.88146 0.88580 0.88319 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.52 37.15 0.32 -2.56 16 2 C -0.14 -3.14 5.04 -26.73 -0.13 -3.27 16 3 C 0.20 4.95 1.84 -27.88 -0.05 4.90 16 4 H 0.04 1.01 5.78 -51.93 -0.30 0.71 16 5 C -0.61 -17.04 9.18 -34.44 -0.32 -17.35 16 6 H 0.07 2.07 8.06 -52.48 -0.42 1.65 16 7 C 0.04 1.20 5.35 -17.82 -0.10 1.10 16 8 N -0.89 -26.64 13.70 55.43 0.76 -25.88 16 9 Si 1.03 24.58 26.23 -169.99 -4.46 20.12 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -5.91 5.48 56.52 0.31 -5.60 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 O -0.34 -7.57 8.84 -39.26 -0.35 -7.92 16 14 C 0.46 8.77 5.03 36.00 0.18 8.95 16 15 O -0.51 -10.64 12.44 -18.75 -0.23 -10.87 16 16 C -0.13 -1.95 0.96 -154.58 -0.15 -2.10 16 17 C -0.09 -1.08 4.97 -26.73 -0.13 -1.21 16 18 C -0.16 -1.87 9.59 37.16 0.36 -1.51 16 19 C 0.05 0.75 8.08 37.61 0.30 1.06 16 20 O -0.38 -5.48 12.37 -35.23 -0.44 -5.92 16 21 C 0.06 0.81 8.35 37.61 0.31 1.13 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 1.13 7.58 -51.93 -0.39 0.74 16 24 H 0.04 0.77 5.77 -51.93 -0.30 0.47 16 25 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.07 1.64 4.99 -51.92 -0.26 1.38 16 27 H 0.27 8.08 8.73 -40.82 -0.36 7.72 16 28 H 0.08 1.01 7.97 -51.93 -0.41 0.60 16 29 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 30 H 0.05 0.59 6.85 -51.93 -0.36 0.23 16 31 H 0.07 0.95 6.58 -51.93 -0.34 0.61 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 1.50 7.41 -51.93 -0.38 1.11 16 34 H 0.10 1.09 6.95 -51.93 -0.36 0.73 16 35 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 36 H 0.09 1.39 8.09 -51.93 -0.42 0.97 16 LS Contribution 285.52 15.07 4.30 4.30 Total: -1.00 -30.45 285.52 -5.12 -35.58 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.30 Total: 1.46 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 0.59 Total: -10.86 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.76 Total: -25.88 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -1.02 Total: -24.70 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -4.46 Total: 20.12 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.45 -5.12 -35.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085968.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.942 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds