Wall clock time and date at job start Mon Mar 30 2020 04:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46898 * 2 1 4 4 H 1.08996 * 109.47511 * 58.76032 * 3 2 1 5 5 C 1.50704 * 109.47005 * 178.75876 * 3 2 1 6 6 H 1.08003 * 120.00002 * 114.69608 * 5 3 2 7 7 C 1.37872 * 120.00118 * 294.69761 * 5 3 2 8 8 N 1.31523 * 119.99876 * 164.03896 * 7 5 3 9 9 Si 1.86800 * 120.00238 * 344.03610 * 7 5 3 10 10 H 1.48503 * 109.47158 * 270.00229 * 9 7 5 11 11 H 1.48500 * 109.46833 * 30.00050 * 9 7 5 12 12 H 1.48492 * 109.47165 * 150.00170 * 9 7 5 13 13 O 1.45197 * 109.47068 * 298.75847 * 3 2 1 14 14 C 1.34231 * 117.00092 * 90.00444 * 13 3 2 15 15 O 1.20826 * 119.99486 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00190 * 180.02562 * 14 13 3 17 17 C 1.53000 * 113.00240 * 162.41278 * 16 14 13 18 18 C 1.52995 * 109.47131 * 295.89283 * 17 16 14 19 19 C 1.54039 * 113.81944 * 30.42368 * 16 14 13 20 20 O 1.44175 * 85.51965 * 223.19715 * 19 16 14 21 21 C 1.44177 * 93.34035 * 24.19556 * 20 19 16 22 22 H 1.09003 * 109.47129 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47485 * 300.00151 * 1 2 3 24 24 H 1.09000 * 109.47356 * 60.00412 * 1 2 3 25 25 H 1.08992 * 109.47411 * 239.99977 * 2 1 3 26 26 H 1.09009 * 109.46863 * 119.99285 * 2 1 3 27 27 H 0.96998 * 119.99825 * 354.90328 * 8 7 5 28 28 H 1.09003 * 109.46946 * 55.89023 * 17 16 14 29 29 H 1.09000 * 109.47161 * 175.89009 * 17 16 14 30 30 H 1.08999 * 109.47209 * 304.54535 * 18 17 16 31 31 H 1.09005 * 109.47205 * 64.54375 * 18 17 16 32 32 H 1.09004 * 109.47114 * 184.54394 * 18 17 16 33 33 H 1.08998 * 113.86084 * 337.34604 * 19 16 14 34 34 H 1.08997 * 113.86344 * 109.04918 * 19 16 14 35 35 H 1.09003 * 113.86284 * 221.66145 * 21 20 19 36 36 H 1.09003 * 113.86838 * 89.95231 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6585 1.9628 0.8786 5 6 3.5466 1.4427 0.0308 6 1 4.1039 1.8273 -0.8106 7 6 4.2137 0.9517 1.1330 8 7 5.4929 0.6573 1.0502 9 14 3.3007 0.7046 2.7439 10 1 3.3843 1.9454 3.5555 11 1 1.8765 0.3921 2.4627 12 1 3.9156 -0.4198 3.4939 13 8 1.5802 2.1183 -1.2001 14 6 0.3988 2.7515 -1.1283 15 8 -0.2305 2.7409 -0.0970 16 6 -0.1430 3.4745 -2.3344 17 6 -1.6418 3.7652 -2.2338 18 6 -2.4161 2.4460 -2.2013 19 6 0.2837 2.8515 -3.6769 20 8 0.5104 4.2092 -4.1057 21 6 0.6994 4.6918 -2.7603 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 5.9496 0.7150 0.1964 28 1 -1.8425 4.3268 -1.3214 29 1 -1.9572 4.3504 -3.0975 30 1 -2.1533 1.8488 -3.0744 31 1 -2.1603 1.8968 -1.2951 32 1 -3.4863 2.6525 -2.2110 33 1 1.1913 2.2510 -3.6157 34 1 -0.5259 2.3507 -4.2078 35 1 0.2194 5.6506 -2.5642 36 1 1.7340 4.6532 -2.4192 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787085968.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:10 Heat of formation + Delta-G solvation = -132.369696 kcal Electronic energy + Delta-G solvation = -18777.395422 eV Core-core repulsion = 15840.996859 eV Total energy + Delta-G solvation = -2936.398563 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.47073 -40.69193 -37.84410 -35.56575 -34.58099 -33.89889 -30.25636 -29.41501 -27.74609 -24.91541 -24.38630 -23.90352 -21.95819 -20.47346 -19.71071 -18.64649 -17.97991 -17.60903 -17.12181 -16.52321 -15.89743 -15.19880 -15.15658 -14.96992 -14.69557 -14.63618 -14.06173 -13.95865 -13.53480 -13.17443 -13.06644 -12.88187 -12.72242 -12.47944 -12.25624 -12.17846 -11.95404 -11.74842 -11.50200 -11.44712 -11.03052 -10.86832 -10.75840 -10.64083 -8.94724 -6.57711 1.13643 1.41049 1.42993 1.62740 1.84085 2.35311 2.49485 2.88178 3.03320 3.46215 3.81336 3.95458 4.14815 4.21568 4.28347 4.32287 4.39902 4.40488 4.48972 4.54749 4.58161 4.81030 4.89197 4.94297 4.97777 5.01445 5.03865 5.09487 5.17724 5.31336 5.39253 5.48207 5.83244 5.93921 6.36796 6.87987 7.19615 8.46095 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.030911 B = 0.007924 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.598035 B = 3532.895024 C = 3969.534129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.203 3.797 4 H 0.030 0.970 5 C -0.617 4.617 6 H 0.030 0.970 7 C -0.001 4.001 8 N -0.920 5.920 9 Si 1.069 2.931 10 H -0.272 1.272 11 H -0.241 1.241 12 H -0.271 1.271 13 O -0.357 6.357 14 C 0.456 3.544 15 O -0.527 6.527 16 C -0.130 4.130 17 C -0.083 4.083 18 C -0.157 4.157 19 C 0.057 3.943 20 O -0.381 6.381 21 C 0.059 3.941 22 H 0.071 0.929 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.260 0.740 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.669 3.856 -6.672 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.178 4.178 3 C 0.149 3.851 4 H 0.048 0.952 5 C -0.655 4.655 6 H 0.048 0.952 7 C -0.201 4.201 8 N -0.553 5.553 9 Si 0.889 3.111 10 H -0.197 1.197 11 H -0.165 1.165 12 H -0.196 1.196 13 O -0.273 6.273 14 C 0.300 3.700 15 O -0.417 6.417 16 C -0.131 4.131 17 C -0.120 4.120 18 C -0.214 4.214 19 C -0.020 4.020 20 O -0.300 6.300 21 C -0.018 4.018 22 H 0.090 0.910 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.124 0.876 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.589 3.501 -5.048 16.756 hybrid contribution 0.751 0.326 -1.311 1.545 sum -14.838 3.827 -6.358 16.590 Atomic orbital electron populations 1.21825 0.94764 1.01865 1.01225 1.22251 0.96163 0.97234 1.02175 1.20700 0.93074 0.89411 0.81899 0.95221 1.22072 0.90727 1.46995 1.05666 0.95160 1.26990 0.96079 0.91724 1.05319 1.70921 1.11308 1.44592 1.28523 0.83826 0.76526 0.78498 0.72254 1.19726 1.16523 1.19584 1.86489 1.35861 1.62218 1.42719 1.23950 0.79341 0.76431 0.90304 1.90558 1.58940 1.58988 1.33165 1.24144 1.00269 0.97440 0.91241 1.21246 0.87011 0.99573 1.04196 1.21836 1.01152 0.96693 1.01731 1.24151 1.01871 0.85969 0.89992 1.89659 1.92813 1.21423 1.26082 1.24081 0.99213 0.97483 0.81042 0.90975 0.93191 0.93704 0.92337 0.91163 0.93122 0.90644 0.87594 0.91697 0.94219 0.90011 0.90024 0.85505 0.85167 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 8.52 71.98 0.61 -4.42 16 2 C -0.14 -6.09 5.04 30.59 0.15 -5.93 16 3 C 0.20 10.03 1.84 29.85 0.05 10.09 16 4 H 0.03 1.53 5.78 -2.39 -0.01 1.51 16 5 C -0.62 -35.68 9.18 25.60 0.23 -35.44 16 6 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 7 C 0.00 -0.03 5.35 84.65 0.45 0.42 16 8 N -0.92 -56.39 13.70 21.45 0.29 -56.10 16 9 Si 1.07 49.14 26.23 68.60 1.80 50.94 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.24 -10.04 5.48 99.48 0.55 -9.50 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 O -0.36 -15.94 8.84 -51.43 -0.45 -16.39 16 14 C 0.46 17.05 5.03 71.23 0.36 17.41 16 15 O -0.53 -21.38 12.44 21.96 0.27 -21.11 16 16 C -0.13 -3.56 0.96 -52.23 -0.05 -3.61 16 17 C -0.08 -1.78 4.97 30.59 0.15 -1.63 16 18 C -0.16 -3.22 9.59 71.98 0.69 -2.53 16 19 C 0.06 1.45 8.08 72.28 0.58 2.03 16 20 O -0.38 -10.27 12.37 -148.98 -1.84 -12.11 16 21 C 0.06 1.51 8.35 72.28 0.60 2.11 16 22 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.05 1.87 7.58 -2.39 -0.02 1.85 16 24 H 0.04 1.57 5.77 -2.39 -0.01 1.55 16 25 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16 26 H 0.07 3.05 4.99 -2.38 -0.01 3.04 16 27 H 0.26 16.10 8.73 -92.71 -0.81 15.29 16 28 H 0.07 1.70 7.97 -2.39 -0.02 1.68 16 29 H 0.11 1.76 8.09 -2.39 -0.02 1.74 16 30 H 0.06 1.17 6.85 -2.39 -0.02 1.16 16 31 H 0.04 1.03 6.58 -2.38 -0.02 1.02 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 2.41 7.41 -2.39 -0.02 2.39 16 34 H 0.13 2.45 6.95 -2.39 -0.02 2.44 16 35 H 0.13 2.52 8.10 -2.39 -0.02 2.50 16 36 H 0.08 2.24 8.09 -2.39 -0.02 2.22 16 Total: -1.00 -66.96 285.52 4.78 -62.18 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.87 Total: 14.09 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 3.85 Total: -21.50 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.29 Total: -56.10 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -2.02 Total: -49.61 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 1.80 Total: 50.94 kcal Total: -66.96 4.78 -62.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085968.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.191 kcal (2) G-P(sol) polarization free energy of solvation -66.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds