Wall clock time and date at job start Mon Mar 30 2020 04:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47412 * 2 1 4 4 H 1.09001 * 109.46978 * 54.99690 * 3 2 1 5 5 C 1.50698 * 109.47661 * 174.99926 * 3 2 1 6 6 H 1.07996 * 120.00329 * 120.00089 * 5 3 2 7 7 C 1.37881 * 119.99944 * 300.00345 * 5 3 2 8 8 N 1.31516 * 119.99932 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00203 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46956 * 59.99759 * 9 7 5 11 11 H 1.48492 * 109.47169 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46989 * 299.99895 * 9 7 5 13 13 O 1.45198 * 109.47392 * 295.00324 * 3 2 1 14 14 C 1.34227 * 117.00164 * 89.99275 * 13 3 2 15 15 O 1.20821 * 120.00428 * 0.02562 * 14 13 3 16 16 C 1.50705 * 120.00057 * 180.02562 * 14 13 3 17 17 O 1.42906 * 112.84577 * 35.21567 * 16 14 13 18 18 C 1.42907 * 113.99988 * 65.12167 * 17 16 14 19 19 C 1.53772 * 113.61823 * 264.02052 * 16 14 13 20 20 C 1.53956 * 87.02207 * 220.04688 * 19 16 14 21 21 C 1.53777 * 113.61411 * 166.40852 * 16 14 13 22 22 H 1.09006 * 109.47329 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47436 * 299.99512 * 1 2 3 24 24 H 1.09003 * 109.47125 * 60.00391 * 1 2 3 25 25 H 1.09000 * 109.47546 * 239.99716 * 2 1 3 26 26 H 1.09002 * 109.47064 * 120.00392 * 2 1 3 27 27 H 0.97002 * 120.00023 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.46377 * 303.07264 * 18 17 16 29 29 H 1.08994 * 109.47104 * 63.07483 * 18 17 16 30 30 H 1.08997 * 109.46749 * 183.07977 * 18 17 16 31 31 H 1.09005 * 113.61512 * 334.56488 * 19 16 14 32 32 H 1.09000 * 113.61941 * 105.46547 * 19 16 14 33 33 H 1.08999 * 113.53452 * 270.80929 * 20 19 16 34 34 H 1.09003 * 113.74107 * 139.94096 * 20 19 16 35 35 H 1.08999 * 113.62082 * 254.52881 * 21 16 14 36 36 H 1.08999 * 113.61661 * 25.35644 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3373 2.1733 9 14 6.0050 0.8800 1.3812 10 1 6.5004 2.2799 1.3809 11 1 6.3978 0.2156 2.6498 12 1 6.5967 0.1452 0.2344 13 8 1.6559 2.0917 -1.2406 14 6 0.4727 2.7254 -1.2559 15 8 -0.2189 2.7377 -0.2653 16 6 0.0069 3.4217 -2.5087 17 8 0.3990 2.7390 -3.7013 18 6 -0.1997 1.4508 -3.8573 19 6 0.3199 4.9271 -2.5294 20 6 -1.0701 5.1256 -3.1610 21 6 -1.4811 3.8088 -2.4813 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8292 -0.0611 2.9499 28 1 0.0351 0.8338 -2.9900 29 1 -1.2807 1.5606 -3.9432 30 1 0.1900 0.9757 -4.7575 31 1 0.4151 5.3670 -1.5366 32 1 1.1436 5.1928 -3.1920 33 1 -1.0651 5.0720 -4.2497 34 1 -1.6037 5.9975 -2.7825 35 1 -2.1093 3.1730 -3.1052 36 1 -1.8794 3.9410 -1.4754 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787087138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:38 Heat of formation + Delta-G solvation = -115.698077 kcal Electronic energy + Delta-G solvation = -18700.960892 eV Core-core repulsion = 15765.285265 eV Total energy + Delta-G solvation = -2935.675627 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.55703 -38.45945 -36.02210 -35.19263 -33.46578 -31.37761 -27.65213 -27.14640 -25.92237 -25.33738 -23.19930 -21.43898 -19.76137 -19.14501 -17.69939 -16.62745 -16.08739 -15.90683 -15.24957 -14.95166 -14.60769 -14.30948 -13.96196 -13.14103 -12.89722 -12.45846 -12.25253 -11.81069 -11.71135 -11.46346 -11.40355 -11.21279 -11.13766 -10.93345 -10.85540 -10.67892 -10.53808 -10.28177 -9.97253 -9.77118 -9.41077 -9.09451 -8.80263 -8.44477 -6.17785 -4.24696 2.86082 3.26960 3.30145 3.32415 3.52374 3.73628 4.33615 4.46067 4.64355 4.80500 5.13176 5.16981 5.39110 5.52597 5.63491 5.69852 5.77501 5.82754 5.88785 5.97253 6.03452 6.19166 6.25454 6.26969 6.42595 6.84030 6.93002 7.14541 7.16106 7.24198 7.61849 7.72951 7.93510 8.16262 8.63832 8.90210 9.40509 10.89013 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.031851 B = 0.007019 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.875560 B = 3988.314253 C = 4236.603702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.218 3.782 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.343 6.343 14 C 0.442 3.558 15 O -0.512 6.512 16 C 0.093 3.907 17 O -0.344 6.344 18 C 0.025 3.975 19 C -0.114 4.114 20 C -0.132 4.132 21 C -0.148 4.148 22 H 0.033 0.967 23 H 0.053 0.947 24 H 0.029 0.971 25 H 0.041 0.959 26 H 0.109 0.891 27 H 0.267 0.733 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 4.766 -9.563 13.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.165 3.835 4 H 0.063 0.937 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.258 6.258 14 C 0.284 3.716 15 O -0.402 6.402 16 C 0.051 3.949 17 O -0.263 6.263 18 C -0.072 4.072 19 C -0.151 4.151 20 C -0.169 4.169 21 C -0.186 4.186 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.127 0.873 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.918 4.706 -9.194 13.014 hybrid contribution 0.747 -0.418 0.470 0.976 sum -7.171 4.288 -8.724 12.080 Atomic orbital electron populations 1.21884 0.98503 0.98986 1.00631 1.22017 0.92498 0.99444 1.03392 1.20688 0.95100 0.88772 0.78909 0.93657 1.21023 0.89718 1.38935 1.06222 0.91337 1.24885 0.99241 0.94753 0.95036 1.69881 1.35469 1.37885 1.09494 0.86341 0.83898 0.78514 0.77454 1.19970 1.21026 1.19916 1.86570 1.33957 1.61650 1.43633 1.23770 0.81132 0.76955 0.89740 1.90593 1.55848 1.58093 1.35710 1.22588 0.96266 0.93495 0.82549 1.87925 1.69132 1.30825 1.38374 1.22866 0.97133 0.84500 1.02661 1.22994 0.98956 0.90263 1.02902 1.22803 0.96118 0.97472 1.00502 1.23484 0.94223 0.97711 1.03161 0.94742 0.92775 0.95171 0.93996 0.87279 0.92351 0.93081 0.93971 0.89027 0.88177 0.89277 0.89476 0.90622 0.90451 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.57 37.15 0.32 -2.82 16 2 C -0.14 -3.41 5.49 -26.74 -0.15 -3.55 16 3 C 0.22 5.89 2.25 -27.89 -0.06 5.83 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.85 8.90 -34.44 -0.31 -15.15 16 6 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.30 11.29 55.43 0.63 -24.67 16 9 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 O -0.34 -8.46 9.65 -43.17 -0.42 -8.88 16 14 C 0.44 9.49 4.71 36.01 0.17 9.66 16 15 O -0.51 -11.84 13.06 -18.75 -0.24 -12.08 16 16 C 0.09 1.55 1.16 -90.96 -0.11 1.45 16 17 O -0.34 -5.73 10.45 -43.67 -0.46 -6.19 16 18 C 0.02 0.35 10.64 101.05 1.08 1.42 16 19 C -0.11 -1.59 7.47 -25.83 -0.19 -1.78 16 20 C -0.13 -1.48 8.02 -25.83 -0.21 -1.69 16 21 C -0.15 -2.00 7.06 -25.92 -0.18 -2.19 16 22 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 1.25 7.80 -51.93 -0.40 0.84 16 24 H 0.03 0.63 5.16 -51.93 -0.27 0.36 16 25 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.11 2.96 5.95 -51.93 -0.31 2.65 16 27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.05 0.84 6.46 -51.93 -0.34 0.51 16 29 H 0.04 0.50 6.82 -51.93 -0.35 0.15 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 1.40 8.09 -51.93 -0.42 0.98 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.93 6.80 -51.93 -0.35 0.58 16 36 H 0.11 1.52 7.34 -51.93 -0.38 1.14 16 LS Contribution 291.42 15.07 4.39 4.39 Total: -1.00 -30.60 291.42 -6.14 -36.73 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.28 Total: 1.61 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 0.26 Total: -7.17 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.63 Total: -24.67 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -1.12 Total: -27.15 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.60 -6.14 -36.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787087138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.964 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds