Wall clock time and date at job start Mon Mar 30 2020 04:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47412 * 2 1 4 4 H 1.09001 * 109.46978 * 54.99690 * 3 2 1 5 5 C 1.50698 * 109.47661 * 174.99926 * 3 2 1 6 6 H 1.07996 * 120.00329 * 120.00089 * 5 3 2 7 7 C 1.37881 * 119.99944 * 300.00345 * 5 3 2 8 8 N 1.31516 * 119.99932 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00203 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46956 * 59.99759 * 9 7 5 11 11 H 1.48492 * 109.47169 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46989 * 299.99895 * 9 7 5 13 13 O 1.45198 * 109.47392 * 295.00324 * 3 2 1 14 14 C 1.34227 * 117.00164 * 89.99275 * 13 3 2 15 15 O 1.20821 * 120.00428 * 0.02562 * 14 13 3 16 16 C 1.50705 * 120.00057 * 180.02562 * 14 13 3 17 17 O 1.42906 * 112.84577 * 35.21567 * 16 14 13 18 18 C 1.42907 * 113.99988 * 65.12167 * 17 16 14 19 19 C 1.53772 * 113.61823 * 264.02052 * 16 14 13 20 20 C 1.53956 * 87.02207 * 220.04688 * 19 16 14 21 21 C 1.53777 * 113.61411 * 166.40852 * 16 14 13 22 22 H 1.09006 * 109.47329 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47436 * 299.99512 * 1 2 3 24 24 H 1.09003 * 109.47125 * 60.00391 * 1 2 3 25 25 H 1.09000 * 109.47546 * 239.99716 * 2 1 3 26 26 H 1.09002 * 109.47064 * 120.00392 * 2 1 3 27 27 H 0.97002 * 120.00023 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.46377 * 303.07264 * 18 17 16 29 29 H 1.08994 * 109.47104 * 63.07483 * 18 17 16 30 30 H 1.08997 * 109.46749 * 183.07977 * 18 17 16 31 31 H 1.09005 * 113.61512 * 334.56488 * 19 16 14 32 32 H 1.09000 * 113.61941 * 105.46547 * 19 16 14 33 33 H 1.08999 * 113.53452 * 270.80929 * 20 19 16 34 34 H 1.09003 * 113.74107 * 139.94096 * 20 19 16 35 35 H 1.08999 * 113.62082 * 254.52881 * 21 16 14 36 36 H 1.08999 * 113.61661 * 25.35644 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3373 2.1733 9 14 6.0050 0.8800 1.3812 10 1 6.5004 2.2799 1.3809 11 1 6.3978 0.2156 2.6498 12 1 6.5967 0.1452 0.2344 13 8 1.6559 2.0917 -1.2406 14 6 0.4727 2.7254 -1.2559 15 8 -0.2189 2.7377 -0.2653 16 6 0.0069 3.4217 -2.5087 17 8 0.3990 2.7390 -3.7013 18 6 -0.1997 1.4508 -3.8573 19 6 0.3199 4.9271 -2.5294 20 6 -1.0701 5.1256 -3.1610 21 6 -1.4811 3.8088 -2.4813 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8292 -0.0611 2.9499 28 1 0.0351 0.8338 -2.9900 29 1 -1.2807 1.5606 -3.9432 30 1 0.1900 0.9757 -4.7575 31 1 0.4151 5.3670 -1.5366 32 1 1.1436 5.1928 -3.1920 33 1 -1.0651 5.0720 -4.2497 34 1 -1.6037 5.9975 -2.7825 35 1 -2.1093 3.1730 -3.1052 36 1 -1.8794 3.9410 -1.4754 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787087138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:38 Heat of formation + Delta-G solvation = -134.211403 kcal Electronic energy + Delta-G solvation = -18701.763690 eV Core-core repulsion = 15765.285265 eV Total energy + Delta-G solvation = -2936.478425 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.05120 -40.00123 -37.71901 -36.53383 -35.50827 -33.40674 -29.54170 -28.45188 -27.25381 -26.50547 -25.16590 -23.01672 -21.60546 -20.44678 -19.37452 -18.60495 -17.76350 -17.46671 -16.67944 -16.59454 -16.22157 -15.59822 -15.17252 -14.89113 -14.82838 -14.06564 -13.62971 -13.38416 -13.38318 -13.18759 -12.96527 -12.82979 -12.72530 -12.60342 -12.38945 -12.16972 -11.94579 -11.80858 -11.72082 -11.46432 -11.20612 -10.87738 -10.62656 -10.48762 -8.30483 -6.47867 1.18476 1.38960 1.42755 1.50848 1.95533 2.37773 2.48298 2.98540 3.31128 3.53876 3.73232 3.81298 4.25691 4.26822 4.32216 4.35851 4.41742 4.51970 4.62058 4.71099 4.77288 4.79651 4.90995 4.95420 5.01906 5.03728 5.16725 5.29238 5.32781 5.47431 5.62227 5.89439 5.96119 6.08499 6.56472 6.94695 7.23957 8.76110 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.031851 B = 0.007019 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.875560 B = 3988.314253 C = 4236.603702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.222 3.778 4 H 0.005 0.995 5 C -0.554 4.554 6 H 0.062 0.938 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.269 1.269 11 H -0.274 1.274 12 H -0.265 1.265 13 O -0.357 6.357 14 C 0.435 3.565 15 O -0.535 6.535 16 C 0.081 3.919 17 O -0.353 6.353 18 C 0.018 3.982 19 C -0.120 4.120 20 C -0.107 4.107 21 C -0.143 4.143 22 H 0.064 0.936 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.272 0.728 28 H 0.021 0.979 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.243 5.245 -11.144 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.023 0.977 5 C -0.592 4.592 6 H 0.080 0.920 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.803 3.197 10 H -0.194 1.194 11 H -0.199 1.199 12 H -0.189 1.189 13 O -0.273 6.273 14 C 0.278 3.722 15 O -0.426 6.426 16 C 0.039 3.961 17 O -0.271 6.271 18 C -0.077 4.077 19 C -0.158 4.158 20 C -0.144 4.144 21 C -0.180 4.180 22 H 0.083 0.917 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.272 5.191 -10.790 14.553 hybrid contribution 0.801 -0.564 0.964 1.374 sum -7.471 4.627 -9.826 13.182 Atomic orbital electron populations 1.21731 0.96178 1.00725 1.00022 1.21850 0.94552 0.98005 1.02256 1.20382 0.94571 0.89386 0.78768 0.97741 1.21305 0.90637 1.40250 1.06970 0.91982 1.25799 1.04323 0.93726 0.94222 1.69999 1.37552 1.37787 1.09827 0.85278 0.77590 0.78841 0.77999 1.19380 1.19884 1.18936 1.86569 1.36071 1.62433 1.42242 1.24991 0.79684 0.76022 0.91468 1.90568 1.56062 1.58766 1.37214 1.23026 0.98727 0.93997 0.80332 1.87919 1.69940 1.31643 1.37587 1.23064 0.98961 0.83279 1.02409 1.23139 1.01399 0.88016 1.03198 1.22768 0.93441 0.96967 1.01226 1.23518 0.91839 0.99300 1.03361 0.91725 0.94505 0.94578 0.93814 0.89450 0.91921 0.96015 0.91302 0.86618 0.88865 0.88637 0.87636 0.88084 0.88568 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.57 71.98 0.62 -5.15 16 2 C -0.13 -6.66 5.49 30.59 0.17 -6.49 16 3 C 0.22 12.54 2.25 29.85 0.07 12.61 16 4 H 0.00 0.30 7.16 -2.39 -0.02 0.29 16 5 C -0.55 -32.58 8.90 25.60 0.23 -32.35 16 6 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 7 C 0.02 1.08 5.29 84.66 0.45 1.53 16 8 N -0.91 -53.09 11.29 21.45 0.24 -52.84 16 9 Si 0.98 43.69 29.54 68.60 2.03 45.71 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 13 O -0.36 -18.26 9.65 -47.64 -0.46 -18.72 16 14 C 0.43 19.08 4.71 71.24 0.34 19.41 16 15 O -0.53 -25.54 13.06 21.98 0.29 -25.25 16 16 C 0.08 2.64 1.16 -11.02 -0.01 2.63 16 17 O -0.35 -11.19 10.45 -140.91 -1.47 -12.67 16 18 C 0.02 0.49 10.64 113.37 1.21 1.70 16 19 C -0.12 -3.18 7.47 31.18 0.23 -2.95 16 20 C -0.11 -2.03 8.02 31.18 0.25 -1.78 16 21 C -0.14 -3.53 7.06 31.12 0.22 -3.31 16 22 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 23 H 0.04 1.73 7.80 -2.39 -0.02 1.71 16 24 H 0.04 1.53 5.16 -2.39 -0.01 1.52 16 25 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.09 4.91 5.95 -2.39 -0.01 4.89 16 27 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.02 0.70 6.46 -2.39 -0.02 0.68 16 29 H 0.07 1.45 6.82 -2.39 -0.02 1.44 16 30 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.09 2.56 8.09 -2.38 -0.02 2.54 16 32 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 2.00 6.80 -2.39 -0.02 1.99 16 36 H 0.09 2.59 7.34 -2.39 -0.02 2.57 16 Total: -1.00 -68.24 291.42 5.45 -62.80 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 1.06 Total: 15.13 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 3.76 Total: -14.16 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.24 Total: -52.84 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -1.65 Total: -56.64 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -68.24 5.45 -62.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787087138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.415 kcal (2) G-P(sol) polarization free energy of solvation -68.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds