Wall clock time and date at job start Mon Mar 30 2020 04:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47274 * 2 1 4 4 H 1.09001 * 109.47045 * 305.00952 * 3 2 1 5 5 C 1.50697 * 109.47117 * 185.00267 * 3 2 1 6 6 H 1.08004 * 119.99775 * 239.99658 * 5 3 2 7 7 C 1.37876 * 120.00271 * 60.00339 * 5 3 2 8 8 N 1.31519 * 119.99693 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00008 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46865 * 60.00152 * 9 7 5 11 11 H 1.48501 * 109.46746 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47618 * 299.99799 * 9 7 5 13 13 O 1.45203 * 109.46914 * 65.00066 * 3 2 1 14 14 C 1.34231 * 117.00109 * 270.00624 * 13 3 2 15 15 O 1.20823 * 119.99687 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99589 * 180.02562 * 14 13 3 17 17 C 1.53001 * 110.46120 * 57.39131 * 16 14 13 18 18 C 1.54517 * 110.50713 * 179.97438 * 16 14 13 19 19 C 1.54479 * 104.06037 * 118.77947 * 18 16 14 20 20 O 1.44433 * 104.80518 * 336.02227 * 19 18 16 21 21 C 1.44422 * 105.27452 * 40.51075 * 20 19 18 22 22 H 1.09003 * 109.47186 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47215 * 299.99475 * 1 2 3 24 24 H 1.08998 * 109.47550 * 60.00024 * 1 2 3 25 25 H 1.09005 * 109.46941 * 240.00383 * 2 1 3 26 26 H 1.08995 * 109.47484 * 120.00502 * 2 1 3 27 27 H 0.96998 * 119.99630 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47126 * 182.60227 * 17 16 14 29 29 H 1.09003 * 109.46936 * 302.60454 * 17 16 14 30 30 H 1.09004 * 109.47311 * 62.59894 * 17 16 14 31 31 H 1.08991 * 110.51174 * 237.42347 * 18 16 14 32 32 H 1.08995 * 110.51247 * 0.13826 * 18 16 14 33 33 H 1.08997 * 110.37024 * 94.85221 * 19 18 16 34 34 H 1.08995 * 110.37315 * 217.18852 * 19 18 16 35 35 H 1.08995 * 110.37333 * 200.65712 * 21 20 19 36 36 H 1.09001 * 110.37394 * 78.31441 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4060 0.3376 -2.1735 9 14 6.0048 0.8813 -1.3819 10 1 6.5974 0.1472 -0.2350 11 1 6.3976 0.2168 -2.6505 12 1 6.4995 2.2814 -1.3822 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7253 1.2561 15 8 -0.2189 2.7375 0.2654 16 6 0.0075 3.4224 2.5086 17 6 1.0307 4.4715 2.9482 18 6 -1.3744 4.0758 2.2831 19 6 -2.2940 3.3711 3.3049 20 8 -1.6522 2.1039 3.5665 21 6 -0.2407 2.4003 3.6400 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8291 -0.0608 -2.9501 28 1 0.7011 4.9327 3.8792 29 1 1.9981 3.9934 3.1022 30 1 1.1220 5.2358 2.1764 31 1 -1.3285 5.1458 2.4850 32 1 -1.7222 3.8925 1.2665 33 1 -2.3629 3.9577 4.2210 34 1 -3.2847 3.2138 2.8786 35 1 0.3459 1.4973 3.4711 36 1 0.0053 2.8382 4.6075 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787090118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:54 Heat of formation + Delta-G solvation = -147.279003 kcal Electronic energy + Delta-G solvation = -18659.194199 eV Core-core repulsion = 15722.149119 eV Total energy + Delta-G solvation = -2937.045079 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.44905 -38.57334 -35.78552 -33.80201 -33.27926 -31.30555 -29.74468 -27.29386 -26.30824 -23.85727 -23.02975 -22.25251 -20.04537 -18.97302 -17.14795 -16.53127 -16.23509 -15.88065 -15.31418 -14.93733 -14.73594 -14.28667 -13.21850 -13.10054 -12.89894 -12.69955 -12.34857 -12.16267 -11.60629 -11.47927 -11.42007 -11.20353 -11.20242 -10.96217 -10.89987 -10.65498 -10.57895 -10.29119 -9.92143 -9.72964 -9.45244 -9.29677 -8.80283 -8.45193 -6.18545 -4.25995 2.97417 3.25395 3.29040 3.30977 3.59113 4.01218 4.31907 4.43354 4.85357 4.97485 5.10397 5.13186 5.25544 5.41841 5.58162 5.64317 5.70671 5.79258 5.96621 5.99389 6.17491 6.25426 6.27992 6.35113 6.50589 6.77888 6.90159 7.00704 7.19441 7.28018 7.61711 7.74632 7.95704 8.16265 8.63859 8.89034 9.39226 10.88169 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.036814 B = 0.006781 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.401357 B = 4128.330849 C = 4474.974158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.046 0.954 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.353 6.353 14 C 0.467 3.533 15 O -0.511 6.511 16 C -0.092 4.092 17 C -0.134 4.134 18 C -0.149 4.149 19 C 0.047 3.953 20 O -0.372 6.372 21 C 0.060 3.940 22 H 0.033 0.967 23 H 0.034 0.966 24 H 0.051 0.949 25 H 0.108 0.892 26 H 0.041 0.959 27 H 0.267 0.733 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.614 6.156 10.180 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.269 6.269 14 C 0.309 3.691 15 O -0.401 6.401 16 C -0.094 4.094 17 C -0.192 4.192 18 C -0.186 4.186 19 C -0.030 4.030 20 O -0.290 6.290 21 C -0.017 4.017 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.126 0.874 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.861 5.815 9.691 13.221 hybrid contribution 0.991 0.135 -0.349 1.060 sum -5.869 5.950 9.342 12.535 Atomic orbital electron populations 1.21860 0.98245 0.99071 1.00873 1.22017 0.92718 0.99310 1.03312 1.20675 0.94941 0.88798 0.78615 0.93635 1.21002 0.89678 1.39095 1.06248 0.91401 1.24886 0.99208 0.94760 0.95066 1.69887 1.35468 1.37732 1.09463 0.86346 0.83907 0.78460 0.77496 1.19931 1.21019 1.20015 1.86445 1.33946 1.62346 1.44138 1.22753 0.80760 0.76734 0.88821 1.90569 1.55399 1.58451 1.35672 1.21833 0.97200 0.96802 0.93536 1.21785 0.98688 0.97363 1.01339 1.23138 0.92497 1.00037 1.02932 1.23417 0.97328 0.85077 0.97201 1.89159 1.18244 1.28779 1.92839 1.23505 0.83066 0.99066 0.96093 0.94829 0.94653 0.92962 0.87387 0.94000 0.92322 0.91521 0.90481 0.91694 0.89823 0.88097 0.92310 0.88988 0.87885 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.57 37.16 0.32 -2.94 16 2 C -0.14 -3.42 5.49 -26.73 -0.15 -3.57 16 3 C 0.22 5.92 2.25 -27.88 -0.06 5.86 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.56 8.90 -34.44 -0.31 -14.87 16 6 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.15 11.30 55.43 0.63 -24.52 16 9 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 O -0.35 -8.30 9.55 -39.26 -0.37 -8.67 16 14 C 0.47 9.76 5.00 36.01 0.18 9.94 16 15 O -0.51 -11.94 12.43 -18.75 -0.23 -12.17 16 16 C -0.09 -1.42 0.99 -154.09 -0.15 -1.57 16 17 C -0.13 -1.71 8.24 37.16 0.31 -1.40 16 18 C -0.15 -1.97 6.32 -25.16 -0.16 -2.13 16 19 C 0.05 0.56 7.63 37.93 0.29 0.85 16 20 O -0.37 -5.75 11.65 -35.23 -0.41 -6.16 16 21 C 0.06 0.86 6.73 37.93 0.26 1.11 16 22 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.03 0.79 6.06 -51.93 -0.31 0.47 16 24 H 0.05 1.24 7.80 -51.93 -0.40 0.84 16 25 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 26 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.88 7.73 -51.93 -0.40 0.48 16 32 H 0.10 1.58 6.50 -51.93 -0.34 1.24 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.62 7.78 -51.93 -0.40 1.21 16 36 H 0.07 0.82 7.83 -51.93 -0.41 0.41 16 LS Contribution 290.97 15.07 4.38 4.38 Total: -1.00 -30.60 290.97 -6.05 -36.65 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.45 Total: 1.63 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 0.43 Total: -7.10 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.63 Total: -24.52 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -1.02 Total: -27.00 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.60 -6.05 -36.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.628 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds