Wall clock time and date at job start Mon Mar 30 2020 04:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47274 * 2 1 4 4 H 1.09001 * 109.47045 * 305.00952 * 3 2 1 5 5 C 1.50697 * 109.47117 * 185.00267 * 3 2 1 6 6 H 1.08004 * 119.99775 * 239.99658 * 5 3 2 7 7 C 1.37876 * 120.00271 * 60.00339 * 5 3 2 8 8 N 1.31519 * 119.99693 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00008 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46865 * 60.00152 * 9 7 5 11 11 H 1.48501 * 109.46746 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47618 * 299.99799 * 9 7 5 13 13 O 1.45203 * 109.46914 * 65.00066 * 3 2 1 14 14 C 1.34231 * 117.00109 * 270.00624 * 13 3 2 15 15 O 1.20823 * 119.99687 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99589 * 180.02562 * 14 13 3 17 17 C 1.53001 * 110.46120 * 57.39131 * 16 14 13 18 18 C 1.54517 * 110.50713 * 179.97438 * 16 14 13 19 19 C 1.54479 * 104.06037 * 118.77947 * 18 16 14 20 20 O 1.44433 * 104.80518 * 336.02227 * 19 18 16 21 21 C 1.44422 * 105.27452 * 40.51075 * 20 19 18 22 22 H 1.09003 * 109.47186 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47215 * 299.99475 * 1 2 3 24 24 H 1.08998 * 109.47550 * 60.00024 * 1 2 3 25 25 H 1.09005 * 109.46941 * 240.00383 * 2 1 3 26 26 H 1.08995 * 109.47484 * 120.00502 * 2 1 3 27 27 H 0.96998 * 119.99630 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47126 * 182.60227 * 17 16 14 29 29 H 1.09003 * 109.46936 * 302.60454 * 17 16 14 30 30 H 1.09004 * 109.47311 * 62.59894 * 17 16 14 31 31 H 1.08991 * 110.51174 * 237.42347 * 18 16 14 32 32 H 1.08995 * 110.51247 * 0.13826 * 18 16 14 33 33 H 1.08997 * 110.37024 * 94.85221 * 19 18 16 34 34 H 1.08995 * 110.37315 * 217.18852 * 19 18 16 35 35 H 1.08995 * 110.37333 * 200.65712 * 21 20 19 36 36 H 1.09001 * 110.37394 * 78.31441 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4060 0.3376 -2.1735 9 14 6.0048 0.8813 -1.3819 10 1 6.5974 0.1472 -0.2350 11 1 6.3976 0.2168 -2.6505 12 1 6.4995 2.2814 -1.3822 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7253 1.2561 15 8 -0.2189 2.7375 0.2654 16 6 0.0075 3.4224 2.5086 17 6 1.0307 4.4715 2.9482 18 6 -1.3744 4.0758 2.2831 19 6 -2.2940 3.3711 3.3049 20 8 -1.6522 2.1039 3.5665 21 6 -0.2407 2.4003 3.6400 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8291 -0.0608 -2.9501 28 1 0.7011 4.9327 3.8792 29 1 1.9981 3.9934 3.1022 30 1 1.1220 5.2358 2.1764 31 1 -1.3285 5.1458 2.4850 32 1 -1.7222 3.8925 1.2665 33 1 -2.3629 3.9577 4.2210 34 1 -3.2847 3.2138 2.8786 35 1 0.3459 1.4973 3.4711 36 1 0.0053 2.8382 4.6075 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787090118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:54 Heat of formation + Delta-G solvation = -166.473415 kcal Electronic energy + Delta-G solvation = -18660.026531 eV Core-core repulsion = 15722.149119 eV Total energy + Delta-G solvation = -2937.877411 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.93493 -39.98696 -37.62065 -35.58756 -34.73281 -33.32423 -30.79025 -29.32961 -27.37293 -25.64538 -24.57256 -23.55229 -21.91334 -20.56202 -18.86799 -18.34658 -17.76210 -17.33176 -16.71123 -16.43387 -16.33285 -15.67361 -14.94232 -14.83586 -14.13363 -14.03205 -13.80996 -13.60605 -13.37741 -13.15425 -13.09223 -12.87495 -12.67102 -12.55610 -12.42271 -12.16004 -12.06762 -11.79210 -11.66972 -11.45264 -11.24702 -10.84472 -10.69365 -10.53737 -8.28564 -6.46034 1.33385 1.40880 1.44675 1.52705 1.97482 2.40443 2.96604 3.00968 3.30421 3.68378 3.88469 4.03073 4.17195 4.29283 4.32487 4.35713 4.49682 4.57220 4.65992 4.72893 4.79465 4.80391 4.87504 4.95181 5.04868 5.12950 5.17788 5.23328 5.35351 5.49974 5.63947 5.77099 5.95911 6.11957 6.59153 6.98280 7.25973 8.78239 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.036814 B = 0.006781 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.401357 B = 4128.330849 C = 4474.974158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.226 3.774 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.982 3.018 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.268 1.268 13 O -0.359 6.359 14 C 0.456 3.544 15 O -0.543 6.543 16 C -0.091 4.091 17 C -0.131 4.131 18 C -0.146 4.146 19 C 0.046 3.954 20 O -0.400 6.400 21 C 0.062 3.938 22 H 0.060 0.940 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.362 7.122 12.233 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.804 3.196 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.193 1.193 13 O -0.275 6.275 14 C 0.301 3.699 15 O -0.434 6.434 16 C -0.093 4.093 17 C -0.188 4.188 18 C -0.184 4.184 19 C -0.030 4.030 20 O -0.319 6.319 21 C -0.015 4.015 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.628 6.792 11.761 15.112 hybrid contribution 0.825 -0.133 -1.006 1.308 sum -5.802 6.659 10.756 13.917 Atomic orbital electron populations 1.21693 0.96494 1.00461 0.99898 1.21868 0.94205 0.98324 1.02322 1.20340 0.94588 0.89119 0.78639 0.97927 1.21306 0.90403 1.40093 1.06981 0.91409 1.25831 1.04349 0.93812 0.94310 1.70017 1.37602 1.37894 1.09879 0.85254 0.77536 0.78842 0.77918 1.18797 1.20269 1.19260 1.86440 1.35783 1.62899 1.42364 1.24063 0.79347 0.75888 0.90641 1.90552 1.55868 1.59455 1.37557 1.22073 0.98895 0.97441 0.90854 1.21837 0.97361 0.96317 1.03257 1.23181 0.91225 1.02165 1.01785 1.23655 0.96886 0.84034 0.98419 1.89130 1.18757 1.30953 1.93049 1.23586 0.82607 0.98003 0.97314 0.92130 0.94696 0.94759 0.89521 0.93576 0.92017 0.87010 0.91685 0.92080 0.86342 0.91211 0.88470 0.88289 0.90166 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.57 71.98 0.62 -5.36 16 2 C -0.13 -6.73 5.49 30.59 0.17 -6.57 16 3 C 0.23 12.59 2.25 29.85 0.07 12.65 16 4 H 0.00 0.18 7.16 -2.39 -0.02 0.17 16 5 C -0.55 -31.47 8.90 25.60 0.23 -31.25 16 6 H 0.07 3.77 7.81 -2.91 -0.02 3.74 16 7 C 0.02 0.93 5.29 84.65 0.45 1.37 16 8 N -0.92 -53.12 11.30 21.45 0.24 -52.88 16 9 Si 0.98 42.96 29.54 68.60 2.03 44.98 16 10 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 13 O -0.36 -17.42 9.55 -51.43 -0.49 -17.91 16 14 C 0.46 19.51 5.00 71.24 0.36 19.86 16 15 O -0.54 -26.50 12.43 21.97 0.27 -26.23 16 16 C -0.09 -2.68 0.99 -51.91 -0.05 -2.73 16 17 C -0.13 -2.98 8.24 71.98 0.59 -2.39 16 18 C -0.15 -3.58 6.32 31.61 0.20 -3.38 16 19 C 0.05 0.97 7.63 72.48 0.55 1.52 16 20 O -0.40 -11.58 11.65 -148.98 -1.74 -13.31 16 21 C 0.06 1.64 6.73 72.49 0.49 2.13 16 22 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.03 1.59 6.06 -2.39 -0.01 1.58 16 24 H 0.03 1.68 7.80 -2.39 -0.02 1.66 16 25 H 0.09 4.90 5.95 -2.38 -0.01 4.89 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.11 1.57 8.08 -2.39 -0.02 1.55 16 29 H 0.06 1.65 8.06 -2.39 -0.02 1.63 16 30 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.12 2.04 7.73 -2.39 -0.02 2.03 16 32 H 0.07 2.17 6.50 -2.39 -0.02 2.16 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 2.49 7.78 -2.39 -0.02 2.47 16 36 H 0.11 2.10 7.83 -2.39 -0.02 2.08 16 Total: -1.00 -69.30 290.97 5.04 -64.26 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.06 Total: 15.21 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 3.67 Total: -14.13 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.24 Total: -52.88 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -1.95 Total: -57.45 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -69.30 5.04 -64.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.214 kcal (2) G-P(sol) polarization free energy of solvation -69.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds