Wall clock time and date at job start Mon Mar 30 2020 04:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47294 * 2 1 4 4 H 1.08997 * 109.46648 * 304.99998 * 3 2 1 5 5 C 1.50696 * 109.47276 * 185.00405 * 3 2 1 6 6 H 1.08001 * 119.99757 * 240.00063 * 5 3 2 7 7 C 1.37878 * 120.00506 * 59.99410 * 5 3 2 8 8 N 1.31512 * 119.99642 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00125 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47163 * 90.00169 * 9 7 5 11 11 H 1.48499 * 109.47037 * 210.00250 * 9 7 5 12 12 H 1.48504 * 109.47126 * 329.99865 * 9 7 5 13 13 O 1.45196 * 109.47051 * 64.99951 * 3 2 1 14 14 C 1.34234 * 116.99938 * 270.00261 * 13 3 2 15 15 O 1.20826 * 119.99712 * 359.72483 * 14 13 3 16 16 C 1.50700 * 120.00068 * 180.02562 * 14 13 3 17 17 C 1.52994 * 109.46890 * 179.97438 * 16 14 13 18 18 H 1.09000 * 110.80860 * 308.62834 * 17 16 14 19 19 C 1.54815 * 110.90339 * 185.00198 * 17 16 14 20 20 C 1.54107 * 104.18787 * 220.92170 * 19 17 16 21 21 O 1.43748 * 107.29034 * 357.96967 * 20 19 17 22 22 C 1.44386 * 106.97579 * 26.51320 * 21 20 19 23 23 H 1.09003 * 109.46887 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47130 * 299.99915 * 1 2 3 25 25 H 1.09004 * 109.47012 * 60.00249 * 1 2 3 26 26 H 1.08999 * 109.47519 * 239.99859 * 2 1 3 27 27 H 1.09009 * 109.47408 * 119.99989 * 2 1 3 28 28 H 0.97004 * 119.99898 * 179.97438 * 8 7 5 29 29 H 1.08992 * 109.47012 * 300.00044 * 16 14 13 30 30 H 1.08999 * 109.46550 * 59.99877 * 16 14 13 31 31 H 1.08994 * 110.49146 * 339.59664 * 19 17 16 32 32 H 1.08994 * 110.48969 * 102.24664 * 19 17 16 33 33 H 1.08995 * 109.88001 * 117.39078 * 20 19 17 34 34 H 1.08998 * 109.87830 * 238.39973 * 20 19 17 35 35 H 1.08998 * 110.61667 * 201.43397 * 22 21 20 36 36 H 1.09001 * 110.61792 * 78.44174 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3365 -2.1728 9 14 6.0050 0.8800 -1.3812 10 1 6.5539 -0.3519 -0.7598 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0721 -0.6890 13 8 1.6559 2.0917 1.2407 14 6 0.4727 2.7255 1.2559 15 8 -0.2168 2.7416 0.2638 16 6 0.0074 3.4226 2.5083 17 6 -1.3608 4.0602 2.2587 18 1 -1.3437 4.6731 1.3575 19 6 -1.8147 4.8912 3.4835 20 6 -3.3168 4.5748 3.6189 21 8 -3.6670 3.6938 2.5384 22 6 -2.4675 2.9786 2.1720 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.8293 -0.0614 -2.9498 29 1 -0.0712 2.6987 3.3193 30 1 0.7245 4.1970 2.7808 31 1 -1.2766 4.5775 4.3780 32 1 -1.6639 5.9549 3.2999 33 1 -3.5077 4.0845 4.5735 34 1 -3.8969 5.4952 3.5525 35 1 -2.5468 2.5911 1.1563 36 1 -2.2713 2.1713 2.8776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787090180.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:32 Heat of formation + Delta-G solvation = -152.859377 kcal Electronic energy + Delta-G solvation = -18057.514182 eV Core-core repulsion = 15120.227120 eV Total energy + Delta-G solvation = -2937.287062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.02374 -38.98368 -35.90530 -33.58628 -33.38979 -31.37362 -29.96874 -27.67031 -26.74014 -23.34799 -22.71020 -21.33815 -20.19862 -19.36817 -17.24885 -16.63424 -16.38644 -15.74702 -15.66189 -15.06153 -14.86425 -14.37821 -13.87693 -13.16728 -12.88520 -12.70524 -12.46936 -11.84014 -11.68309 -11.50695 -11.45711 -11.27082 -11.16378 -10.99310 -10.79868 -10.67790 -10.63728 -10.29017 -9.80945 -9.70254 -9.57306 -9.35680 -8.81819 -8.46355 -6.19627 -4.26826 3.00629 3.23430 3.28997 3.32376 3.59900 3.97717 4.31380 4.50598 4.72695 4.84161 5.01662 5.12284 5.19839 5.28967 5.54578 5.60227 5.61112 5.71648 5.84253 5.89403 6.04737 6.21353 6.21973 6.28289 6.45112 6.83443 6.86126 6.95993 7.15678 7.26159 7.60899 7.73166 7.94954 8.15374 8.63239 8.88631 9.38609 10.87088 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.047959 B = 0.005250 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.686824 B = 5332.145172 C = 5697.586573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.357 6.357 14 C 0.449 3.551 15 O -0.516 6.516 16 C -0.108 4.108 17 C -0.109 4.109 18 H 0.097 0.903 19 C -0.153 4.153 20 C 0.046 3.954 21 O -0.380 6.380 22 C 0.052 3.948 23 H 0.033 0.967 24 H 0.031 0.969 25 H 0.053 0.947 26 H 0.108 0.892 27 H 0.041 0.959 28 H 0.266 0.734 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.095 5.840 10.482 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 O -0.274 6.274 14 C 0.292 3.708 15 O -0.406 6.406 16 C -0.146 4.146 17 C -0.127 4.127 18 H 0.115 0.885 19 C -0.191 4.191 20 C -0.031 4.031 21 O -0.299 6.299 22 C -0.024 4.024 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.126 0.874 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.448 5.696 9.884 14.195 hybrid contribution 1.177 -0.085 -0.103 1.185 sum -7.271 5.611 9.781 13.417 Atomic orbital electron populations 1.21855 0.98364 0.99001 1.00705 1.22020 0.92647 0.99391 1.03329 1.20665 0.94978 0.88766 0.78736 0.93501 1.21048 0.89753 1.38994 1.06229 0.91397 1.24883 0.99216 0.94764 0.95057 1.69890 1.35375 1.37791 1.09489 0.86290 0.83933 0.78664 0.77350 1.20355 1.20966 1.19656 1.86472 1.34282 1.62459 1.44142 1.23237 0.80860 0.77075 0.89621 1.90603 1.55588 1.58546 1.35896 1.21325 0.96966 1.00772 0.95569 1.22543 0.93634 0.97324 0.99228 0.88477 1.23013 0.96186 1.01223 0.98632 1.23119 0.94924 0.94244 0.90776 1.88875 1.32505 1.56178 1.52377 1.23718 0.82978 0.93749 1.01976 0.94834 0.95000 0.92779 0.87365 0.94041 0.92386 0.88243 0.87869 0.90312 0.90246 0.92597 0.90104 0.87710 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.57 37.16 0.32 -2.74 16 2 C -0.14 -3.34 5.49 -26.73 -0.15 -3.49 16 3 C 0.22 5.80 2.25 -27.88 -0.06 5.74 16 4 H 0.05 1.37 7.15 -51.93 -0.37 0.99 16 5 C -0.52 -14.51 8.90 -34.44 -0.31 -14.82 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.95 11.29 55.43 0.63 -24.32 16 9 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 O -0.36 -8.26 9.81 -39.27 -0.39 -8.64 16 14 C 0.45 8.81 6.25 36.01 0.22 9.03 16 15 O -0.52 -11.25 12.10 -18.75 -0.23 -11.48 16 16 C -0.11 -1.47 5.21 -27.89 -0.15 -1.62 16 17 C -0.11 -1.38 2.67 -88.62 -0.24 -1.62 16 18 H 0.10 1.38 7.87 -51.93 -0.41 0.97 16 19 C -0.15 -1.46 6.60 -25.20 -0.17 -1.62 16 20 C 0.05 0.47 7.70 37.74 0.29 0.76 16 21 O -0.38 -5.33 11.52 -35.23 -0.41 -5.74 16 22 C 0.05 0.72 6.66 38.21 0.25 0.97 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.03 0.65 6.06 -51.93 -0.31 0.33 16 25 H 0.05 1.22 7.80 -51.93 -0.41 0.82 16 26 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 27 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.10 1.17 7.98 -51.93 -0.41 0.75 16 30 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 1.64 7.49 -51.93 -0.39 1.25 16 36 H 0.06 0.74 7.93 -51.93 -0.41 0.33 16 LS Contribution 292.23 15.07 4.40 4.40 Total: -1.00 -30.13 292.23 -6.59 -36.72 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.51 Total: 0.97 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -0.07 Total: -7.78 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.63 Total: -24.32 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -1.02 Total: -25.86 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.13 -6.59 -36.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090180.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.141 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds