Wall clock time and date at job start Mon Mar 30 2020 04:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47294 * 2 1 4 4 H 1.08997 * 109.46648 * 304.99998 * 3 2 1 5 5 C 1.50696 * 109.47276 * 185.00405 * 3 2 1 6 6 H 1.08001 * 119.99757 * 240.00063 * 5 3 2 7 7 C 1.37878 * 120.00506 * 59.99410 * 5 3 2 8 8 N 1.31512 * 119.99642 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00125 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47163 * 90.00169 * 9 7 5 11 11 H 1.48499 * 109.47037 * 210.00250 * 9 7 5 12 12 H 1.48504 * 109.47126 * 329.99865 * 9 7 5 13 13 O 1.45196 * 109.47051 * 64.99951 * 3 2 1 14 14 C 1.34234 * 116.99938 * 270.00261 * 13 3 2 15 15 O 1.20826 * 119.99712 * 359.72483 * 14 13 3 16 16 C 1.50700 * 120.00068 * 180.02562 * 14 13 3 17 17 C 1.52994 * 109.46890 * 179.97438 * 16 14 13 18 18 H 1.09000 * 110.80860 * 308.62834 * 17 16 14 19 19 C 1.54815 * 110.90339 * 185.00198 * 17 16 14 20 20 C 1.54107 * 104.18787 * 220.92170 * 19 17 16 21 21 O 1.43748 * 107.29034 * 357.96967 * 20 19 17 22 22 C 1.44386 * 106.97579 * 26.51320 * 21 20 19 23 23 H 1.09003 * 109.46887 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47130 * 299.99915 * 1 2 3 25 25 H 1.09004 * 109.47012 * 60.00249 * 1 2 3 26 26 H 1.08999 * 109.47519 * 239.99859 * 2 1 3 27 27 H 1.09009 * 109.47408 * 119.99989 * 2 1 3 28 28 H 0.97004 * 119.99898 * 179.97438 * 8 7 5 29 29 H 1.08992 * 109.47012 * 300.00044 * 16 14 13 30 30 H 1.08999 * 109.46550 * 59.99877 * 16 14 13 31 31 H 1.08994 * 110.49146 * 339.59664 * 19 17 16 32 32 H 1.08994 * 110.48969 * 102.24664 * 19 17 16 33 33 H 1.08995 * 109.88001 * 117.39078 * 20 19 17 34 34 H 1.08998 * 109.87830 * 238.39973 * 20 19 17 35 35 H 1.08998 * 110.61667 * 201.43397 * 22 21 20 36 36 H 1.09001 * 110.61792 * 78.44174 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3365 -2.1728 9 14 6.0050 0.8800 -1.3812 10 1 6.5539 -0.3519 -0.7598 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0721 -0.6890 13 8 1.6559 2.0917 1.2407 14 6 0.4727 2.7255 1.2559 15 8 -0.2168 2.7416 0.2638 16 6 0.0074 3.4226 2.5083 17 6 -1.3608 4.0602 2.2587 18 1 -1.3437 4.6731 1.3575 19 6 -1.8147 4.8912 3.4835 20 6 -3.3168 4.5748 3.6189 21 8 -3.6670 3.6938 2.5384 22 6 -2.4675 2.9786 2.1720 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.8293 -0.0614 -2.9498 29 1 -0.0712 2.6987 3.3193 30 1 0.7245 4.1970 2.7808 31 1 -1.2766 4.5775 4.3780 32 1 -1.6639 5.9549 3.2999 33 1 -3.5077 4.0845 4.5735 34 1 -3.8969 5.4952 3.5525 35 1 -2.5468 2.5911 1.1563 36 1 -2.2713 2.1713 2.8776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787090180.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:32 Heat of formation + Delta-G solvation = -171.234637 kcal Electronic energy + Delta-G solvation = -18058.310993 eV Core-core repulsion = 15120.227120 eV Total energy + Delta-G solvation = -2938.083873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.50498 -40.16738 -37.65820 -35.48509 -34.59030 -33.32918 -30.89455 -29.42947 -28.13773 -25.25592 -23.77280 -22.74217 -21.61886 -20.94450 -18.92906 -18.43750 -17.73062 -17.19577 -16.88677 -16.66901 -16.03886 -15.93593 -15.10012 -14.77196 -14.56422 -14.06679 -13.81147 -13.34579 -13.27748 -13.15874 -12.94387 -12.82432 -12.64822 -12.51427 -12.26162 -12.13110 -11.90667 -11.75843 -11.55872 -11.40663 -11.13079 -10.81214 -10.63275 -10.51210 -8.27160 -6.44069 1.41460 1.43299 1.45182 1.54761 2.07939 2.43207 3.00882 3.02826 3.52650 3.79022 3.86951 4.06217 4.23488 4.27999 4.37332 4.40314 4.44647 4.56238 4.60270 4.71813 4.82020 4.87768 4.90066 4.91343 5.09442 5.13798 5.22344 5.25652 5.41622 5.52739 5.68596 5.92165 6.01042 6.18369 6.61919 7.05454 7.28845 8.79433 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.047959 B = 0.005250 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.686824 B = 5332.145172 C = 5697.586573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.005 0.995 5 C -0.551 4.551 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.265 1.265 13 O -0.367 6.367 14 C 0.439 3.561 15 O -0.543 6.543 16 C -0.095 4.095 17 C -0.108 4.108 18 H 0.074 0.926 19 C -0.141 4.141 20 C 0.037 3.963 21 O -0.406 6.406 22 C 0.051 3.949 23 H 0.059 0.941 24 H 0.041 0.959 25 H 0.033 0.967 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.270 0.730 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.625 6.400 12.663 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.171 3.829 4 H 0.023 0.977 5 C -0.588 4.588 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.190 1.190 13 O -0.283 6.283 14 C 0.284 3.716 15 O -0.435 6.435 16 C -0.132 4.132 17 C -0.127 4.127 18 H 0.093 0.907 19 C -0.178 4.178 20 C -0.039 4.039 21 O -0.326 6.326 22 C -0.026 4.026 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.999 6.269 12.085 15.790 hybrid contribution 0.932 -0.211 -0.785 1.236 sum -7.067 6.058 11.300 14.640 Atomic orbital electron populations 1.21703 0.96191 1.00517 1.00179 1.21861 0.94529 0.98170 1.02228 1.20317 0.94410 0.89270 0.78857 0.97703 1.21356 0.90709 1.39890 1.06847 0.91614 1.25798 1.04179 0.93906 0.94378 1.70019 1.37421 1.37976 1.09895 0.85223 0.77806 0.79117 0.77524 1.19236 1.20425 1.18972 1.86461 1.36380 1.63178 1.42314 1.24524 0.79345 0.76256 0.91446 1.90601 1.55932 1.59290 1.37637 1.21480 0.97598 1.01448 0.92698 1.22491 0.92820 0.97178 1.00202 0.90721 1.22999 0.95627 1.01485 0.97691 1.23401 0.95681 0.94412 0.90371 1.88845 1.32806 1.56995 1.53916 1.23641 0.83656 0.94589 1.00699 0.92189 0.94045 0.94743 0.89813 0.93572 0.92103 0.85360 0.85222 0.87772 0.88745 0.90809 0.88741 0.90785 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.59 8.57 71.98 0.62 -4.98 16 2 C -0.13 -6.52 5.49 30.60 0.17 -6.35 16 3 C 0.22 12.17 2.25 29.85 0.07 12.23 16 4 H 0.01 0.32 7.15 -2.39 -0.02 0.30 16 5 C -0.55 -31.13 8.90 25.60 0.23 -30.91 16 6 H 0.07 3.64 7.81 -2.91 -0.02 3.62 16 7 C 0.02 0.94 5.29 84.66 0.45 1.39 16 8 N -0.92 -52.52 11.29 21.45 0.24 -52.27 16 9 Si 0.98 42.73 29.54 68.60 2.03 44.75 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 O -0.37 -17.05 9.81 -51.46 -0.50 -17.56 16 14 C 0.44 17.18 6.25 71.24 0.44 17.63 16 15 O -0.54 -24.46 12.10 21.96 0.27 -24.19 16 16 C -0.10 -2.35 5.21 29.85 0.16 -2.20 16 17 C -0.11 -2.57 2.67 -9.50 -0.03 -2.60 16 18 H 0.07 2.11 7.87 -2.39 -0.02 2.09 16 19 C -0.14 -2.18 6.60 31.59 0.21 -1.97 16 20 C 0.04 0.66 7.70 72.36 0.56 1.22 16 21 O -0.41 -10.95 11.52 -148.98 -1.72 -12.66 16 22 C 0.05 1.36 6.66 72.66 0.48 1.85 16 23 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.04 1.68 6.06 -2.39 -0.01 1.67 16 25 H 0.03 1.60 7.80 -2.39 -0.02 1.58 16 26 H 0.08 4.63 5.95 -2.39 -0.01 4.61 16 27 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 28 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.13 2.52 7.98 -2.39 -0.02 2.50 16 30 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.10 1.13 7.86 -2.39 -0.02 1.12 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.07 2.41 7.49 -2.39 -0.02 2.40 16 36 H 0.07 1.70 7.93 -2.39 -0.02 1.68 16 Total: -1.00 -67.54 292.23 4.72 -62.82 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 1.05 Total: 13.80 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 3.35 Total: -14.69 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.24 Total: -52.27 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: -1.96 Total: -54.41 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -67.54 4.72 -62.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090180.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.417 kcal (2) G-P(sol) polarization free energy of solvation -67.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds