Wall clock time and date at job start Mon Mar 30 2020 04:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 115.54871 * 2 1 4 4 C 1.53069 * 117.51660 * 214.27266 * 2 1 3 5 5 C 1.53000 * 59.98584 * 252.52266 * 4 2 1 6 6 H 1.09002 * 117.49833 * 107.50105 * 5 4 2 7 7 C 1.50697 * 117.50034 * 252.49893 * 5 4 2 8 8 O 1.20826 * 120.00094 * 68.74827 * 7 5 4 9 9 O 1.34225 * 120.00155 * 248.74712 * 7 5 4 10 10 C 1.45200 * 117.00401 * 180.02562 * 9 7 5 11 11 C 1.53000 * 109.47336 * 180.02562 * 10 9 7 12 12 O 1.42896 * 109.47241 * 64.99403 * 11 10 9 13 13 C 1.42908 * 113.99681 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46937 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99811 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00149 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99570 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00100 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47246 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47260 * 120.00584 * 18 16 14 21 21 H 1.48505 * 109.47075 * 239.99939 * 18 16 14 22 22 H 1.08997 * 109.47537 * 274.33188 * 1 2 3 23 23 H 1.09001 * 109.46849 * 34.33948 * 1 2 3 24 24 H 1.09005 * 109.46784 * 154.33407 * 1 2 3 25 25 H 1.09003 * 109.47376 * 205.67158 * 3 2 1 26 26 H 1.09006 * 109.46992 * 325.66339 * 3 2 1 27 27 H 1.08999 * 109.47689 * 85.66017 * 3 2 1 28 28 H 1.09008 * 117.49334 * 145.03821 * 4 2 1 29 29 H 1.08999 * 117.51639 * 0.02562 * 4 2 1 30 30 H 1.09002 * 109.46742 * 299.99412 * 10 9 7 31 31 H 1.08997 * 109.47649 * 59.99484 * 10 9 7 32 32 H 1.09004 * 109.47079 * 185.00052 * 11 10 9 33 33 H 1.09006 * 109.46809 * 304.99109 * 11 10 9 34 34 H 1.08996 * 109.47159 * 299.99716 * 13 12 11 35 35 H 1.08996 * 109.46960 * 60.00556 * 13 12 11 36 36 H 0.97009 * 119.99492 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2372 -1.1218 -0.7645 5 6 2.2365 -1.1206 0.7655 6 1 1.6112 -1.8580 1.2691 7 6 3.5289 -0.7803 1.4617 8 8 3.9687 0.3436 1.4036 9 8 4.1916 -1.7256 2.1464 10 6 5.4292 -1.3264 2.7923 11 6 6.0370 -2.5287 3.5175 12 8 6.4129 -3.5217 2.5612 13 6 6.9939 -4.6932 3.1376 14 6 7.3494 -5.6675 2.0443 15 1 7.1518 -5.4170 1.0124 16 6 7.9279 -6.8783 2.3611 17 7 8.1689 -7.1831 3.6176 18 14 8.3692 -8.0857 1.0059 19 1 7.9995 -7.5082 -0.3113 20 1 9.8298 -8.3522 1.0366 21 1 7.6298 -9.3565 1.2149 22 1 -0.3634 0.0776 1.0247 23 1 -0.3633 0.8486 -0.5797 24 1 -0.3633 -0.9263 -0.4451 25 1 3.1822 1.3088 -0.4452 26 1 1.5809 2.0742 -0.5797 27 1 2.2764 1.7418 1.0247 28 1 3.1725 -0.8760 -1.2675 29 1 1.6125 -1.8597 -1.2678 30 1 6.1304 -0.9633 2.0409 31 1 5.2245 -0.5333 3.5114 32 1 6.9175 -2.2095 4.0752 33 1 5.3027 -2.9468 4.2062 34 1 7.8942 -4.4193 3.6876 35 1 6.2791 -5.1562 3.8179 36 1 8.5755 -8.0352 3.8405 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815221370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:14 Heat of formation + Delta-G solvation = -119.822516 kcal Electronic energy + Delta-G solvation = -17101.897891 eV Core-core repulsion = 14166.043414 eV Total energy + Delta-G solvation = -2935.854476 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.63570 -38.27090 -36.79614 -35.80326 -32.77201 -30.42045 -29.50720 -27.64573 -26.96517 -24.87208 -22.44696 -22.02395 -20.77752 -19.18207 -17.70330 -16.55730 -16.45203 -16.04283 -15.32026 -14.68965 -14.66805 -14.33650 -14.03390 -13.83820 -13.37352 -12.83454 -12.76389 -12.58633 -12.19322 -11.99402 -11.87149 -11.48643 -11.38510 -10.90206 -10.86789 -10.72906 -10.43132 -10.35631 -10.22212 -10.06566 -9.79072 -9.11554 -8.87985 -8.21504 -6.12285 -4.13822 2.19574 2.73813 3.28875 3.35258 3.42086 3.53420 4.32608 4.39516 4.53328 4.59560 4.73434 4.85151 5.01544 5.24427 5.24969 5.37851 5.44206 5.47115 5.54380 5.69426 5.75494 5.79237 5.84478 5.87604 5.94599 5.97243 6.10258 6.29095 6.67846 7.05393 7.39700 7.78229 7.93568 8.12427 8.52521 8.99199 9.51026 10.99371 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.032749 B = 0.004157 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.778323 B = 6733.992611 C = 7282.328598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.107 4.107 4 C -0.141 4.141 5 C -0.164 4.164 6 H 0.134 0.866 7 C 0.490 3.510 8 O -0.513 6.513 9 O -0.338 6.338 10 C 0.075 3.925 11 C 0.062 3.938 12 O -0.391 6.391 13 C 0.194 3.806 14 C -0.514 4.514 15 H 0.067 0.933 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.442 13.905 -4.765 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.097 4.097 3 C -0.163 4.163 4 C -0.178 4.178 5 C -0.183 4.183 6 H 0.152 0.848 7 C 0.334 3.666 8 O -0.402 6.402 9 O -0.253 6.253 10 C 0.001 3.999 11 C -0.016 4.016 12 O -0.311 6.311 13 C 0.120 3.880 14 C -0.552 4.552 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.736 3.264 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.217 14.097 -4.841 19.921 hybrid contribution 0.535 -0.836 -0.051 0.994 sum -12.682 13.261 -4.892 18.990 Atomic orbital electron populations 1.21404 0.91137 1.02439 1.02349 1.21729 0.94982 0.91796 1.01159 1.21409 0.99801 0.92504 1.02632 1.23313 1.03131 1.00963 0.90369 1.21901 0.95135 1.05348 0.95884 0.84808 1.22564 0.84891 0.82894 0.76251 1.90632 1.68036 1.22320 1.59257 1.86592 1.36259 1.41103 1.61380 1.23205 0.82820 0.97143 0.96717 1.22322 0.97651 0.89528 0.92108 1.87921 1.81625 1.28898 1.32631 1.20246 0.91869 0.81080 0.94851 1.21094 1.40014 1.00223 0.93904 0.91451 1.24953 0.95565 0.97969 0.96043 1.69977 1.43552 1.23410 1.16879 0.86270 0.78017 0.80443 0.81712 1.19458 1.20832 1.20797 0.91842 0.91505 0.91991 0.91620 0.92954 0.91416 0.87932 0.87199 0.90564 0.90477 0.91962 0.93218 0.97601 0.97483 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.85 37.16 0.37 -0.50 16 2 C -0.10 -0.96 2.70 -154.47 -0.42 -1.38 16 3 C -0.11 -1.14 8.09 37.16 0.30 -0.84 16 4 C -0.14 -1.45 9.53 -26.70 -0.25 -1.71 16 5 C -0.16 -1.96 6.02 -91.77 -0.55 -2.52 16 6 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 7 C 0.49 7.56 7.72 36.00 0.28 7.83 16 8 O -0.51 -8.42 12.86 -18.75 -0.24 -8.66 16 9 O -0.34 -5.91 10.19 -42.01 -0.43 -6.34 16 10 C 0.07 1.23 5.84 37.16 0.22 1.45 16 11 C 0.06 1.15 6.33 37.16 0.24 1.39 16 12 O -0.39 -9.67 10.30 -38.80 -0.40 -10.07 16 13 C 0.19 5.37 5.69 36.01 0.20 5.57 16 14 C -0.51 -15.32 9.43 -34.44 -0.32 -15.65 16 15 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 18 Si 0.91 21.93 29.54 -169.99 -5.02 16.91 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.43 7.92 -51.93 -0.41 0.02 16 24 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 25 H 0.06 0.80 7.02 -51.93 -0.36 0.43 16 26 H 0.05 0.45 7.92 -51.93 -0.41 0.04 16 27 H 0.07 0.80 7.26 -51.93 -0.38 0.43 16 28 H 0.10 1.13 8.05 -51.92 -0.42 0.71 16 29 H 0.11 0.92 8.05 -51.93 -0.42 0.50 16 30 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -32.73 309.54 -6.47 -39.20 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -5.74 Total: -4.65 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.04 Total: -4.83 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -1.07 Total: -25.07 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.73 -6.47 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815221370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.619 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds