Wall clock time and date at job start Mon Mar 30 2020 04:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 115.54871 * 2 1 4 4 C 1.53069 * 117.51660 * 214.27266 * 2 1 3 5 5 C 1.53000 * 59.98584 * 252.52266 * 4 2 1 6 6 H 1.09002 * 117.49833 * 107.50105 * 5 4 2 7 7 C 1.50697 * 117.50034 * 252.49893 * 5 4 2 8 8 O 1.20826 * 120.00094 * 68.74827 * 7 5 4 9 9 O 1.34225 * 120.00155 * 248.74712 * 7 5 4 10 10 C 1.45200 * 117.00401 * 180.02562 * 9 7 5 11 11 C 1.53000 * 109.47336 * 180.02562 * 10 9 7 12 12 O 1.42896 * 109.47241 * 64.99403 * 11 10 9 13 13 C 1.42908 * 113.99681 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46937 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99811 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00149 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99570 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00100 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47246 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47260 * 120.00584 * 18 16 14 21 21 H 1.48505 * 109.47075 * 239.99939 * 18 16 14 22 22 H 1.08997 * 109.47537 * 274.33188 * 1 2 3 23 23 H 1.09001 * 109.46849 * 34.33948 * 1 2 3 24 24 H 1.09005 * 109.46784 * 154.33407 * 1 2 3 25 25 H 1.09003 * 109.47376 * 205.67158 * 3 2 1 26 26 H 1.09006 * 109.46992 * 325.66339 * 3 2 1 27 27 H 1.08999 * 109.47689 * 85.66017 * 3 2 1 28 28 H 1.09008 * 117.49334 * 145.03821 * 4 2 1 29 29 H 1.08999 * 117.51639 * 0.02562 * 4 2 1 30 30 H 1.09002 * 109.46742 * 299.99412 * 10 9 7 31 31 H 1.08997 * 109.47649 * 59.99484 * 10 9 7 32 32 H 1.09004 * 109.47079 * 185.00052 * 11 10 9 33 33 H 1.09006 * 109.46809 * 304.99109 * 11 10 9 34 34 H 1.08996 * 109.47159 * 299.99716 * 13 12 11 35 35 H 1.08996 * 109.46960 * 60.00556 * 13 12 11 36 36 H 0.97009 * 119.99492 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2372 -1.1218 -0.7645 5 6 2.2365 -1.1206 0.7655 6 1 1.6112 -1.8580 1.2691 7 6 3.5289 -0.7803 1.4617 8 8 3.9687 0.3436 1.4036 9 8 4.1916 -1.7256 2.1464 10 6 5.4292 -1.3264 2.7923 11 6 6.0370 -2.5287 3.5175 12 8 6.4129 -3.5217 2.5612 13 6 6.9939 -4.6932 3.1376 14 6 7.3494 -5.6675 2.0443 15 1 7.1518 -5.4170 1.0124 16 6 7.9279 -6.8783 2.3611 17 7 8.1689 -7.1831 3.6176 18 14 8.3692 -8.0857 1.0059 19 1 7.9995 -7.5082 -0.3113 20 1 9.8298 -8.3522 1.0366 21 1 7.6298 -9.3565 1.2149 22 1 -0.3634 0.0776 1.0247 23 1 -0.3633 0.8486 -0.5797 24 1 -0.3633 -0.9263 -0.4451 25 1 3.1822 1.3088 -0.4452 26 1 1.5809 2.0742 -0.5797 27 1 2.2764 1.7418 1.0247 28 1 3.1725 -0.8760 -1.2675 29 1 1.6125 -1.8597 -1.2678 30 1 6.1304 -0.9633 2.0409 31 1 5.2245 -0.5333 3.5114 32 1 6.9175 -2.2095 4.0752 33 1 5.3027 -2.9468 4.2062 34 1 7.8942 -4.4193 3.6876 35 1 6.2791 -5.1562 3.8179 36 1 8.5755 -8.0352 3.8405 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815221370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:13 Heat of formation + Delta-G solvation = -139.529545 kcal Electronic energy + Delta-G solvation = -17102.752451 eV Core-core repulsion = 14166.043414 eV Total energy + Delta-G solvation = -2936.709037 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.79787 -39.37680 -38.48163 -37.13383 -34.96491 -31.86817 -30.46769 -29.05404 -28.36897 -25.98215 -24.56721 -23.46456 -21.87091 -20.06811 -18.90678 -18.68046 -17.92124 -17.40129 -16.98197 -16.41479 -16.19712 -15.63872 -15.24844 -14.76986 -14.66131 -14.16906 -14.03920 -13.72881 -13.51464 -13.25236 -12.95588 -12.90102 -12.72680 -12.71665 -12.45802 -12.21144 -12.01012 -11.74223 -11.30148 -11.28326 -11.26926 -10.92383 -10.69993 -10.29887 -8.33985 -6.46399 1.03813 1.39906 1.41283 1.56133 1.59618 2.33764 2.65794 2.99981 3.03298 3.53208 3.59978 3.73820 3.89916 4.01952 4.06755 4.13292 4.38325 4.46556 4.59376 4.67449 4.79563 4.81118 4.82602 4.94837 5.02660 5.05861 5.07745 5.14880 5.26841 5.38995 5.52633 5.54706 5.93002 6.47366 6.71232 6.77664 7.25380 8.78546 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.032749 B = 0.004157 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.778323 B = 6733.992611 C = 7282.328598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.106 4.106 4 C -0.137 4.137 5 C -0.184 4.184 6 H 0.147 0.853 7 C 0.485 3.515 8 O -0.528 6.528 9 O -0.359 6.359 10 C 0.078 3.922 11 C 0.054 3.946 12 O -0.410 6.410 13 C 0.207 3.793 14 C -0.551 4.551 15 H 0.059 0.941 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.984 3.016 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.270 1.270 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.056 0.944 34 H -0.007 1.007 35 H -0.010 1.010 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.522 13.730 -5.896 20.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.085 4.085 3 C -0.163 4.163 4 C -0.174 4.174 5 C -0.203 4.203 6 H 0.165 0.835 7 C 0.330 3.670 8 O -0.419 6.419 9 O -0.276 6.276 10 C 0.005 3.995 11 C -0.023 4.023 12 O -0.330 6.330 13 C 0.132 3.868 14 C -0.589 4.589 15 H 0.078 0.922 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.807 3.193 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.195 1.195 22 H 0.085 0.915 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.153 0.847 30 H 0.088 0.912 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.010 0.990 35 H 0.007 0.993 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.309 13.947 -5.962 20.852 hybrid contribution 0.855 -0.683 0.351 1.149 sum -13.453 13.263 -5.611 19.708 Atomic orbital electron populations 1.21445 0.88726 1.03813 1.03048 1.21888 0.96529 0.90737 0.99349 1.21380 0.99356 0.93692 1.01886 1.23452 1.03156 1.01752 0.89054 1.22098 0.93957 1.07453 0.96765 0.83492 1.23265 0.85568 0.82406 0.75756 1.90620 1.68693 1.22789 1.59777 1.86588 1.36584 1.42378 1.62048 1.23171 0.82702 0.96479 0.97133 1.22648 0.98846 0.88956 0.91860 1.87865 1.81565 1.29021 1.34584 1.19889 0.90861 0.81997 0.94008 1.21413 1.41680 1.01776 0.94003 0.92236 1.25954 0.94669 0.99624 0.98853 1.70070 1.43489 1.24310 1.18968 0.85124 0.78271 0.77710 0.78222 1.18975 1.19537 1.19473 0.91483 0.90100 0.90683 0.93641 0.90602 0.92874 0.89126 0.84747 0.91206 0.87401 0.89942 0.92590 0.98960 0.99259 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.85 71.98 0.71 -0.65 16 2 C -0.08 -1.55 2.70 -52.16 -0.14 -1.69 16 3 C -0.11 -2.18 8.09 71.98 0.58 -1.59 16 4 C -0.14 -2.64 9.53 30.62 0.29 -2.35 16 5 C -0.18 -4.24 6.02 -11.54 -0.07 -4.31 16 6 H 0.15 2.94 8.14 -2.39 -0.02 2.92 16 7 C 0.48 14.95 7.72 71.24 0.55 15.50 16 8 O -0.53 -17.45 12.86 21.96 0.28 -17.17 16 9 O -0.36 -12.65 10.19 -48.72 -0.50 -13.14 16 10 C 0.08 2.57 5.84 71.98 0.42 2.99 16 11 C 0.05 2.02 6.33 71.98 0.46 2.47 16 12 O -0.41 -20.74 10.30 -145.57 -1.50 -22.23 16 13 C 0.21 11.80 5.69 71.24 0.41 12.21 16 14 C -0.55 -33.39 9.43 25.60 0.24 -33.14 16 15 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 16 C 0.01 0.44 5.46 84.65 0.46 0.90 16 17 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 18 Si 0.98 44.57 29.54 68.60 2.03 46.60 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.08 0.77 7.92 -2.39 -0.02 0.75 16 24 H 0.07 0.73 7.90 -2.38 -0.02 0.71 16 25 H 0.04 1.10 7.02 -2.39 -0.02 1.08 16 26 H 0.08 1.17 7.92 -2.38 -0.02 1.15 16 27 H 0.05 1.24 7.26 -2.39 -0.02 1.22 16 28 H 0.09 1.96 8.05 -2.38 -0.02 1.94 16 29 H 0.13 1.90 8.05 -2.39 -0.02 1.88 16 30 H 0.07 2.35 8.13 -2.39 -0.02 2.33 16 31 H 0.11 2.84 8.13 -2.39 -0.02 2.82 16 32 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -70.58 309.54 5.55 -65.03 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.04 Total: 6.18 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 3.91 Total: -9.68 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.28 Total: -55.58 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -1.71 Total: -52.55 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -70.58 5.55 -65.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815221370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.495 kcal (2) G-P(sol) polarization free energy of solvation -70.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds