Wall clock time and date at job start Mon Mar 30 2020 04:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47313 * 2 1 4 4 H 1.08995 * 109.46941 * 306.38398 * 3 2 1 5 5 C 1.50700 * 109.47196 * 186.38166 * 3 2 1 6 6 H 1.08001 * 119.99582 * 240.00394 * 5 3 2 7 7 C 1.37878 * 119.99955 * 59.99961 * 5 3 2 8 8 N 1.31519 * 120.00016 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99831 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47445 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47341 * 120.00338 * 9 7 5 12 12 H 1.48506 * 109.46831 * 239.99706 * 9 7 5 13 13 C 1.52998 * 109.46885 * 66.38128 * 3 2 1 14 14 C 1.50701 * 109.61780 * 284.12508 * 13 3 2 15 15 O 1.20825 * 119.99851 * 349.63241 * 14 13 3 16 16 O 1.34222 * 120.00324 * 169.63500 * 14 13 3 17 17 C 1.53177 * 109.54678 * 44.34801 * 13 3 2 18 18 C 1.53095 * 109.21788 * 176.87655 * 17 13 3 19 19 O 1.42903 * 109.41446 * 302.36409 * 18 17 13 20 20 C 1.42905 * 114.10056 * 61.15379 * 19 18 17 21 21 C 1.53091 * 109.41458 * 298.84328 * 20 19 18 22 22 H 1.09000 * 109.47239 * 293.04932 * 1 2 3 23 23 H 1.08996 * 109.47058 * 53.04788 * 1 2 3 24 24 H 1.09003 * 109.47581 * 173.04804 * 1 2 3 25 25 H 1.09005 * 109.46801 * 239.99730 * 2 1 3 26 26 H 1.08999 * 109.46939 * 120.00093 * 2 1 3 27 27 H 0.96997 * 120.00109 * 179.97438 * 8 7 5 28 28 H 0.96700 * 117.00531 * 180.02562 * 16 14 13 29 29 H 1.08998 * 109.52209 * 56.93703 * 17 13 3 30 30 H 1.08997 * 109.52191 * 296.81539 * 17 13 3 31 31 H 1.08999 * 109.47604 * 62.34198 * 18 17 13 32 32 H 1.08997 * 109.47781 * 182.36396 * 18 17 13 33 33 H 1.08999 * 109.47936 * 58.82619 * 20 19 18 34 34 H 1.09002 * 109.47928 * 178.85133 * 20 19 18 35 35 H 1.08997 * 109.52179 * 177.51557 * 21 20 19 36 36 H 1.09003 * 109.52189 * 297.63952 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5864 1.9882 -0.8273 5 6 3.5387 1.4454 -0.1579 6 1 4.1615 1.8837 0.6079 7 6 4.1148 0.8884 -1.2800 8 7 3.3563 0.3541 -2.2122 9 14 5.9725 0.8914 -1.4753 10 1 6.5933 1.5459 -0.2958 11 1 6.4616 -0.5070 -1.5793 12 1 6.3395 1.6369 -2.7061 13 6 1.6652 2.1159 1.3217 14 6 0.1995 2.4666 1.3130 15 8 -0.4363 2.3798 0.2893 16 8 -0.3995 2.8754 2.4424 17 6 1.9568 1.1617 2.4839 18 6 1.6527 1.8705 3.8063 19 8 2.4353 3.0628 3.8971 20 6 2.1713 4.0141 2.8639 21 6 2.4962 3.3913 1.5036 22 1 -0.3634 0.4024 0.9456 23 1 -0.3633 0.6178 -0.8212 24 1 -0.3634 -1.0201 -0.1244 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7616 -0.0374 -3.0017 28 1 -1.3410 3.0887 2.3877 29 1 3.0065 0.8691 2.4603 30 1 1.3295 0.2749 2.3933 31 1 0.5940 2.1267 3.8463 32 1 1.8986 1.2099 4.6377 33 1 1.1194 4.2983 2.8916 34 1 2.7908 4.8979 3.0165 35 1 2.2539 4.0998 0.7115 36 1 3.5571 3.1449 1.4599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821972386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:15 Heat of formation + Delta-G solvation = -137.915822 kcal Electronic energy + Delta-G solvation = -19531.591107 eV Core-core repulsion = 16594.952046 eV Total energy + Delta-G solvation = -2936.639061 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76318 -38.10250 -36.34796 -35.05735 -32.40438 -31.38294 -30.34022 -27.37015 -25.27789 -23.27611 -22.80711 -22.10364 -20.28125 -18.49329 -17.64436 -16.18843 -15.88961 -15.57533 -15.42953 -14.96247 -14.47835 -14.22836 -13.43827 -13.07847 -12.74069 -12.70615 -12.23205 -11.90174 -11.70139 -11.31387 -11.09097 -10.88544 -10.85389 -10.75490 -10.48650 -10.35450 -10.08173 -9.80076 -9.49344 -9.35268 -9.23288 -8.79252 -8.62738 -8.29438 -6.00857 -4.08202 2.82945 3.28116 3.36832 3.39251 3.59428 4.36196 4.42231 5.23815 5.32144 5.43179 5.51893 5.55994 5.82498 5.84198 6.00824 6.09793 6.15724 6.28722 6.35418 6.45839 6.54086 6.59853 6.69995 6.82765 6.90522 6.97748 7.06084 7.34659 7.46140 7.66162 7.74176 7.96844 8.10811 8.36950 8.49645 8.94561 9.56143 11.04523 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.010524 C = 0.008542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.295579 B = 2659.821470 C = 3277.263182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.069 3.931 4 H 0.043 0.957 5 C -0.514 4.514 6 H 0.065 0.935 7 C 0.063 3.937 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.034 4.034 14 C 0.476 3.524 15 O -0.501 6.501 16 O -0.519 6.519 17 C -0.138 4.138 18 C 0.046 3.954 19 O -0.386 6.386 20 C 0.053 3.947 21 C -0.138 4.138 22 H 0.024 0.976 23 H 0.062 0.938 24 H 0.022 0.978 25 H 0.096 0.904 26 H 0.036 0.964 27 H 0.260 0.740 28 H 0.387 0.613 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.640 3.597 9.237 10.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C 0.051 3.949 4 H 0.061 0.939 5 C -0.552 4.552 6 H 0.083 0.917 7 C -0.139 4.139 8 N -0.523 5.523 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.035 4.035 14 C 0.319 3.681 15 O -0.387 6.387 16 O -0.332 6.332 17 C -0.176 4.176 18 C -0.030 4.030 19 O -0.304 6.304 20 C -0.024 4.024 21 C -0.175 4.175 22 H 0.043 0.957 23 H 0.080 0.920 24 H 0.041 0.959 25 H 0.114 0.886 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.245 0.755 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.244 3.414 8.929 10.459 hybrid contribution 0.090 -0.052 -0.579 0.588 sum -4.154 3.362 8.349 9.913 Atomic orbital electron populations 1.22142 0.99117 0.98474 1.00218 1.21738 0.91779 1.00065 1.02547 1.18704 0.95928 0.92015 0.88267 0.93937 1.21278 0.90816 1.38207 1.04890 0.91720 1.24950 0.97799 0.95251 0.95877 1.69912 1.34515 1.38676 1.09199 0.86582 0.85936 0.77689 0.78082 1.19676 1.21114 1.21126 1.20895 0.84292 0.97023 1.01270 1.24211 0.91498 0.72240 0.80157 1.90692 1.66353 1.48147 1.33513 1.84851 1.29620 1.79235 1.39472 1.22265 1.04273 0.98054 0.92968 1.22999 0.96393 0.86322 0.97318 1.87820 1.64314 1.28670 1.49642 1.22779 1.00439 0.91437 0.87717 1.22313 1.03061 0.95668 0.96447 0.95693 0.91953 0.95898 0.88578 0.94538 0.93035 0.75506 0.89085 0.90774 0.90847 0.90038 0.92729 0.89748 0.91241 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.04 37.16 0.30 -2.74 16 2 C -0.12 -2.90 4.74 -26.73 -0.13 -3.03 16 3 C 0.07 1.66 1.32 -91.77 -0.12 1.54 16 4 H 0.04 1.18 7.36 -51.93 -0.38 0.80 16 5 C -0.51 -13.15 7.32 -34.44 -0.25 -13.40 16 6 H 0.06 1.61 5.61 -52.49 -0.29 1.32 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 8 N -0.88 -24.77 11.29 55.43 0.63 -24.14 16 9 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 13 C -0.03 -0.66 0.30 -155.41 -0.05 -0.71 16 14 C 0.48 8.77 4.79 36.01 0.17 8.94 16 15 O -0.50 -10.62 12.82 -18.75 -0.24 -10.86 16 16 O -0.52 -7.31 7.96 -39.24 -0.31 -7.62 16 17 C -0.14 -2.48 3.82 -26.59 -0.10 -2.58 16 18 C 0.05 0.71 6.55 37.21 0.24 0.96 16 19 O -0.39 -6.54 10.77 -35.23 -0.38 -6.92 16 20 C 0.05 0.83 6.55 37.20 0.24 1.08 16 21 C -0.14 -2.53 4.46 -26.52 -0.12 -2.65 16 22 H 0.02 0.49 5.00 -51.93 -0.26 0.23 16 23 H 0.06 1.45 6.79 -51.93 -0.35 1.09 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.10 2.56 5.92 -51.93 -0.31 2.25 16 26 H 0.04 0.81 5.98 -51.93 -0.31 0.50 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.39 3.76 9.10 45.56 0.41 4.18 16 29 H 0.09 1.76 7.71 -51.93 -0.40 1.36 16 30 H 0.07 1.31 5.82 -51.93 -0.30 1.01 16 31 H 0.07 1.09 5.13 -51.93 -0.27 0.82 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.82 5.95 -51.93 -0.31 0.51 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.10 2.07 5.70 -51.93 -0.30 1.78 16 LS Contribution 263.83 15.07 3.98 3.98 Total: -1.00 -29.34 263.83 -5.15 -34.48 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -3.89 Total: 6.44 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 0.10 Total: -11.02 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.63 Total: -24.14 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.93 Total: -25.39 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.34 -5.15 -34.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821972386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.433 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds