Wall clock time and date at job start Mon Mar 30 2020 04:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47313 * 2 1 4 4 H 1.08995 * 109.46941 * 306.38398 * 3 2 1 5 5 C 1.50700 * 109.47196 * 186.38166 * 3 2 1 6 6 H 1.08001 * 119.99582 * 240.00394 * 5 3 2 7 7 C 1.37878 * 119.99955 * 59.99961 * 5 3 2 8 8 N 1.31519 * 120.00016 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99831 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47445 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47341 * 120.00338 * 9 7 5 12 12 H 1.48506 * 109.46831 * 239.99706 * 9 7 5 13 13 C 1.52998 * 109.46885 * 66.38128 * 3 2 1 14 14 C 1.50701 * 109.61780 * 284.12508 * 13 3 2 15 15 O 1.20825 * 119.99851 * 349.63241 * 14 13 3 16 16 O 1.34222 * 120.00324 * 169.63500 * 14 13 3 17 17 C 1.53177 * 109.54678 * 44.34801 * 13 3 2 18 18 C 1.53095 * 109.21788 * 176.87655 * 17 13 3 19 19 O 1.42903 * 109.41446 * 302.36409 * 18 17 13 20 20 C 1.42905 * 114.10056 * 61.15379 * 19 18 17 21 21 C 1.53091 * 109.41458 * 298.84328 * 20 19 18 22 22 H 1.09000 * 109.47239 * 293.04932 * 1 2 3 23 23 H 1.08996 * 109.47058 * 53.04788 * 1 2 3 24 24 H 1.09003 * 109.47581 * 173.04804 * 1 2 3 25 25 H 1.09005 * 109.46801 * 239.99730 * 2 1 3 26 26 H 1.08999 * 109.46939 * 120.00093 * 2 1 3 27 27 H 0.96997 * 120.00109 * 179.97438 * 8 7 5 28 28 H 0.96700 * 117.00531 * 180.02562 * 16 14 13 29 29 H 1.08998 * 109.52209 * 56.93703 * 17 13 3 30 30 H 1.08997 * 109.52191 * 296.81539 * 17 13 3 31 31 H 1.08999 * 109.47604 * 62.34198 * 18 17 13 32 32 H 1.08997 * 109.47781 * 182.36396 * 18 17 13 33 33 H 1.08999 * 109.47936 * 58.82619 * 20 19 18 34 34 H 1.09002 * 109.47928 * 178.85133 * 20 19 18 35 35 H 1.08997 * 109.52179 * 177.51557 * 21 20 19 36 36 H 1.09003 * 109.52189 * 297.63952 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5864 1.9882 -0.8273 5 6 3.5387 1.4454 -0.1579 6 1 4.1615 1.8837 0.6079 7 6 4.1148 0.8884 -1.2800 8 7 3.3563 0.3541 -2.2122 9 14 5.9725 0.8914 -1.4753 10 1 6.5933 1.5459 -0.2958 11 1 6.4616 -0.5070 -1.5793 12 1 6.3395 1.6369 -2.7061 13 6 1.6652 2.1159 1.3217 14 6 0.1995 2.4666 1.3130 15 8 -0.4363 2.3798 0.2893 16 8 -0.3995 2.8754 2.4424 17 6 1.9568 1.1617 2.4839 18 6 1.6527 1.8705 3.8063 19 8 2.4353 3.0628 3.8971 20 6 2.1713 4.0141 2.8639 21 6 2.4962 3.3913 1.5036 22 1 -0.3634 0.4024 0.9456 23 1 -0.3633 0.6178 -0.8212 24 1 -0.3634 -1.0201 -0.1244 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7616 -0.0374 -3.0017 28 1 -1.3410 3.0887 2.3877 29 1 3.0065 0.8691 2.4603 30 1 1.3295 0.2749 2.3933 31 1 0.5940 2.1267 3.8463 32 1 1.8986 1.2099 4.6377 33 1 1.1194 4.2983 2.8916 34 1 2.7908 4.8979 3.0165 35 1 2.2539 4.0998 0.7115 36 1 3.5571 3.1449 1.4599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821972386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:15 Heat of formation + Delta-G solvation = -157.617493 kcal Electronic energy + Delta-G solvation = -19532.445436 eV Core-core repulsion = 16594.952046 eV Total energy + Delta-G solvation = -2937.493390 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.23745 -39.48159 -37.84550 -36.57606 -34.25574 -33.04905 -31.78186 -29.18346 -26.88077 -24.87941 -24.39080 -23.54853 -21.90218 -20.16572 -19.03447 -17.99945 -17.36947 -16.95980 -16.91589 -16.55849 -16.21346 -15.55864 -14.98146 -14.70707 -14.51795 -14.14428 -13.86545 -13.47588 -13.21368 -13.03628 -12.77356 -12.62275 -12.57921 -12.45093 -12.03197 -11.98626 -11.64690 -11.48540 -11.13413 -10.98387 -10.95549 -10.48179 -10.32149 -10.16139 -8.04828 -6.17539 1.36028 1.41744 1.44934 1.54895 2.22017 2.48981 3.13542 3.23131 3.85276 3.95253 4.07522 4.19965 4.48286 4.53078 4.55584 4.61039 4.71467 4.77728 4.81347 4.90252 4.98356 5.06355 5.15122 5.22030 5.34123 5.45436 5.53284 5.60219 5.71047 5.75563 6.00370 6.15698 6.38755 6.41282 6.93248 7.17140 7.49926 9.00300 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.010524 C = 0.008542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.295579 B = 2659.821470 C = 3277.263182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.119 4.119 3 C 0.071 3.929 4 H -0.005 1.005 5 C -0.516 4.516 6 H 0.070 0.930 7 C 0.011 3.989 8 N -0.918 5.918 9 Si 0.949 3.051 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.287 1.287 13 C -0.039 4.039 14 C 0.487 3.513 15 O -0.534 6.534 16 O -0.500 6.500 17 C -0.134 4.134 18 C 0.050 3.950 19 O -0.394 6.394 20 C 0.060 3.940 21 C -0.136 4.136 22 H 0.042 0.958 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.257 0.743 28 H 0.414 0.586 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.852 4.182 11.649 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C 0.053 3.947 4 H 0.013 0.987 5 C -0.554 4.554 6 H 0.088 0.912 7 C -0.187 4.187 8 N -0.558 5.558 9 Si 0.776 3.224 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.214 1.214 13 C -0.040 4.040 14 C 0.331 3.669 15 O -0.423 6.423 16 O -0.315 6.315 17 C -0.171 4.171 18 C -0.026 4.026 19 O -0.313 6.313 20 C -0.017 4.017 21 C -0.174 4.174 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.275 0.725 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.469 4.016 11.380 12.869 hybrid contribution 0.102 -0.202 -1.308 1.328 sum -4.366 3.814 10.072 11.621 Atomic orbital electron populations 1.21967 0.97338 0.99074 1.00201 1.21604 0.93323 0.99536 1.01260 1.18501 0.94782 0.92115 0.89310 0.98723 1.21626 0.92041 1.37081 1.04661 0.91175 1.25715 1.01789 0.95320 0.95892 1.70070 1.36130 1.39924 1.09724 0.85630 0.81227 0.77502 0.78057 1.18545 1.21079 1.21350 1.20701 0.85950 0.97833 0.99525 1.23733 0.90887 0.71769 0.80494 1.90708 1.66924 1.49747 1.34925 1.84725 1.31718 1.78206 1.36801 1.22215 1.03208 0.97960 0.93734 1.23079 0.97053 0.86087 0.96357 1.87825 1.64842 1.29074 1.49598 1.22807 1.01754 0.91595 0.85531 1.22262 1.01642 0.95137 0.98345 0.93900 0.94333 0.94279 0.92105 0.93419 0.93341 0.72482 0.90854 0.90579 0.89482 0.87629 0.91376 0.87531 0.92070 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 8.04 71.98 0.58 -4.91 16 2 C -0.12 -5.71 4.74 30.59 0.15 -5.57 16 3 C 0.07 3.50 1.32 -11.54 -0.02 3.49 16 4 H -0.01 -0.31 7.36 -2.39 -0.02 -0.33 16 5 C -0.52 -26.92 7.32 25.60 0.19 -26.73 16 6 H 0.07 3.52 5.61 -2.91 -0.02 3.50 16 7 C 0.01 0.60 5.29 84.65 0.45 1.05 16 8 N -0.92 -53.33 11.29 21.45 0.24 -53.09 16 9 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 10 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 13 C -0.04 -1.50 0.30 -52.76 -0.02 -1.52 16 14 C 0.49 17.15 4.79 71.24 0.34 17.49 16 15 O -0.53 -22.42 12.82 21.97 0.28 -22.14 16 16 O -0.50 -12.21 7.96 -51.34 -0.41 -12.62 16 17 C -0.13 -4.55 3.82 30.69 0.12 -4.43 16 18 C 0.05 1.38 6.55 72.01 0.47 1.85 16 19 O -0.39 -12.00 10.77 -148.98 -1.60 -13.61 16 20 C 0.06 1.70 6.55 72.01 0.47 2.17 16 21 C -0.14 -4.90 4.46 30.73 0.14 -4.76 16 22 H 0.04 1.64 5.00 -2.39 -0.01 1.63 16 23 H 0.04 1.81 6.79 -2.39 -0.02 1.80 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 25 H 0.06 3.36 5.92 -2.38 -0.01 3.34 16 26 H 0.05 2.12 5.98 -2.39 -0.01 2.11 16 27 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.41 6.25 9.10 -74.06 -0.67 5.58 16 29 H 0.07 2.75 7.71 -2.39 -0.02 2.73 16 30 H 0.08 2.53 5.82 -2.39 -0.01 2.52 16 31 H 0.09 2.18 5.13 -2.39 -0.01 2.17 16 32 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 1.77 5.95 -2.39 -0.01 1.76 16 34 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.09 3.38 5.70 -2.39 -0.01 3.37 16 Total: -1.00 -64.69 263.83 3.84 -60.85 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.44 Total: 17.41 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 2.87 Total: -21.86 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.24 Total: -53.09 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -1.73 Total: -48.37 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -64.69 3.84 -60.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821972386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.766 kcal (2) G-P(sol) polarization free energy of solvation -64.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds