Wall clock time and date at job start Mon Mar 30 2020 04:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47071 * 2 1 4 4 H 1.09007 * 109.46705 * 176.89861 * 3 2 1 5 5 C 1.50698 * 109.47121 * 56.90074 * 3 2 1 6 6 H 1.08004 * 120.00021 * 240.41022 * 5 3 2 7 7 C 1.37875 * 120.00430 * 60.41180 * 5 3 2 8 8 N 1.31516 * 120.00383 * 208.65116 * 7 5 3 9 9 Si 1.86802 * 119.99849 * 28.65270 * 7 5 3 10 10 H 1.48501 * 109.47200 * 92.02526 * 9 7 5 11 11 H 1.48502 * 109.47229 * 212.02678 * 9 7 5 12 12 H 1.48499 * 109.47133 * 332.02798 * 9 7 5 13 13 C 1.52994 * 109.47307 * 296.89373 * 3 2 1 14 14 C 1.50702 * 109.51752 * 70.55575 * 13 3 2 15 15 O 1.20825 * 120.00051 * 24.52969 * 14 13 3 16 16 O 1.34232 * 120.00012 * 204.53003 * 14 13 3 17 17 C 1.53174 * 109.52610 * 190.74204 * 13 3 2 18 18 C 1.53174 * 109.04065 * 176.89199 * 17 13 3 19 19 C 1.53098 * 109.16029 * 303.02186 * 18 17 13 20 20 O 1.42903 * 109.41658 * 57.60537 * 19 18 17 21 21 C 1.42904 * 114.09923 * 298.84594 * 20 19 18 22 22 H 1.08994 * 109.47120 * 192.72347 * 1 2 3 23 23 H 1.09003 * 109.46802 * 312.71935 * 1 2 3 24 24 H 1.08995 * 109.47021 * 72.71759 * 1 2 3 25 25 H 1.09006 * 109.47014 * 120.00106 * 2 1 3 26 26 H 1.08996 * 109.46785 * 239.99852 * 2 1 3 27 27 H 0.96998 * 119.99880 * 179.97438 * 8 7 5 28 28 H 0.96696 * 117.00135 * 180.02562 * 16 14 13 29 29 H 1.09003 * 109.54107 * 296.76231 * 17 13 3 30 30 H 1.09002 * 109.54121 * 57.02049 * 17 13 3 31 31 H 1.08996 * 109.52429 * 183.11602 * 18 17 13 32 32 H 1.08996 * 109.52068 * 62.92030 * 18 17 13 33 33 H 1.09001 * 109.47607 * 297.62631 * 19 18 17 34 34 H 1.08995 * 109.48033 * 177.59274 * 19 18 17 35 35 H 1.09001 * 109.47973 * 301.17298 * 21 20 19 36 36 H 1.08997 * 109.47864 * 181.14106 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1287 1.4430 0.0556 5 6 1.4759 2.1747 1.1902 6 1 0.8558 3.0468 1.0436 7 6 1.7515 1.7315 2.4664 8 7 0.8919 1.9484 3.4378 9 14 3.3458 0.8230 2.8157 10 1 4.3856 1.7938 3.2420 11 1 3.1230 -0.1703 3.8969 12 1 3.7965 0.1233 1.5858 13 6 1.5949 2.1409 -1.2864 14 6 0.1063 2.3723 -1.2445 15 8 -0.4645 2.4424 -0.1819 16 8 -0.5854 2.5006 -2.3877 17 6 2.3195 3.4840 -1.4169 18 6 1.9252 4.1376 -2.7449 19 6 2.2600 3.1827 -3.8938 20 8 1.5782 1.9427 -3.6949 21 6 1.9423 1.2631 -2.4916 22 1 -0.3633 -1.0024 0.2263 23 1 -0.3633 0.6972 0.7550 24 1 -0.3633 0.3053 -0.9812 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.0856 1.6363 4.3356 28 1 -1.5379 2.6481 -2.3102 29 1 2.0327 4.1348 -0.5908 30 1 3.3970 3.3204 -1.3967 31 1 2.4787 5.0680 -2.8715 32 1 0.8554 4.3462 -2.7447 33 1 3.3353 3.0065 -3.9183 34 1 1.9423 3.6248 -4.8381 35 1 3.0135 1.0618 -2.4978 36 1 1.3958 0.3224 -2.4259 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821972572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:58 Heat of formation + Delta-G solvation = -124.808831 kcal Electronic energy + Delta-G solvation = -19737.776563 eV Core-core repulsion = 16801.705864 eV Total energy + Delta-G solvation = -2936.070699 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.58740 -38.04972 -36.09470 -34.52679 -32.89538 -31.88401 -30.13079 -27.19238 -24.83253 -24.01698 -23.10944 -21.91040 -20.03349 -18.38608 -17.19014 -16.80325 -15.97059 -15.62908 -15.18368 -14.70719 -14.33659 -13.52063 -13.40293 -13.10575 -13.04951 -12.78878 -12.39269 -12.20088 -11.86409 -11.53251 -11.03918 -10.89554 -10.78999 -10.69837 -10.37575 -10.25976 -10.14745 -9.95194 -9.81101 -9.49664 -9.06573 -8.87907 -8.70317 -7.86226 -6.00124 -3.77305 3.27166 3.32852 3.42895 3.45909 3.90722 4.23576 4.53901 5.14815 5.18806 5.25226 5.28349 5.36804 5.55004 5.70215 5.81482 5.92196 6.05888 6.09276 6.17083 6.24279 6.29019 6.45744 6.52554 6.64907 6.68756 6.70126 7.04041 7.21304 7.27134 7.36748 7.56914 7.77854 7.90632 8.61443 8.96253 9.30143 9.69447 11.11528 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.029913 B = 0.010388 C = 0.009743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.810743 B = 2694.875594 C = 2873.047377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.033 3.967 4 H 0.034 0.966 5 C -0.504 4.504 6 H 0.095 0.905 7 C 0.083 3.917 8 N -0.872 5.872 9 Si 0.836 3.164 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.262 1.262 13 C -0.057 4.057 14 C 0.475 3.525 15 O -0.456 6.456 16 O -0.520 6.520 17 C -0.104 4.104 18 C -0.161 4.161 19 C 0.064 3.936 20 O -0.369 6.369 21 C 0.067 3.933 22 H 0.021 0.979 23 H 0.109 0.891 24 H 0.026 0.974 25 H 0.052 0.948 26 H 0.030 0.970 27 H 0.259 0.741 28 H 0.387 0.613 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.230 0.987 -12.705 12.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C 0.014 3.986 4 H 0.052 0.948 5 C -0.540 4.540 6 H 0.113 0.887 7 C -0.119 4.119 8 N -0.508 5.508 9 Si 0.662 3.338 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.187 1.187 13 C -0.058 4.058 14 C 0.315 3.685 15 O -0.340 6.340 16 O -0.331 6.331 17 C -0.141 4.141 18 C -0.199 4.199 19 C -0.013 4.013 20 O -0.287 6.287 21 C -0.010 4.010 22 H 0.040 0.960 23 H 0.127 0.873 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.243 0.757 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.308 0.845 -12.342 12.584 hybrid contribution 0.543 -0.431 0.750 1.021 sum 2.851 0.414 -11.592 11.944 Atomic orbital electron populations 1.22262 0.96217 1.00672 1.01390 1.21922 0.96655 0.98503 0.98839 1.19144 0.96117 0.91919 0.91420 0.94815 1.21045 1.30639 1.14597 0.87735 0.88738 1.24850 0.95577 0.94845 0.96655 1.70190 1.32440 1.46207 1.01968 0.87494 0.87735 0.80211 0.78317 1.20889 1.21707 1.18666 1.21072 0.88209 0.97785 0.98769 1.23025 0.90708 0.73749 0.81004 1.90873 1.70378 1.42783 1.29918 1.84770 1.25328 1.85061 1.37925 1.21564 0.99934 0.95227 0.97403 1.22309 1.02806 0.98797 0.95940 1.22471 0.95608 0.85275 0.97954 1.87974 1.66320 1.33936 1.40442 1.22811 0.99591 0.95264 0.83289 0.95959 0.87294 0.95459 0.92913 0.95121 0.93155 0.75739 0.89745 0.90963 0.91377 0.90741 0.93917 0.89627 0.92899 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.09 37.16 0.30 -2.97 16 2 C -0.12 -2.62 4.75 -26.73 -0.13 -2.75 16 3 C 0.03 0.74 1.24 -91.77 -0.11 0.62 16 4 H 0.03 0.75 6.63 -51.93 -0.34 0.41 16 5 C -0.50 -13.41 5.56 -34.44 -0.19 -13.60 16 6 H 0.09 2.79 5.67 -52.48 -0.30 2.49 16 7 C 0.08 2.33 5.16 -17.82 -0.09 2.24 16 8 N -0.87 -26.25 13.96 55.43 0.77 -25.48 16 9 Si 0.84 20.61 26.13 -169.99 -4.44 16.17 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.26 -6.10 6.04 56.52 0.34 -5.76 16 13 C -0.06 -1.08 0.29 -155.53 -0.05 -1.13 16 14 C 0.47 9.48 3.60 36.01 0.13 9.61 16 15 O -0.46 -10.93 10.87 -18.75 -0.20 -11.13 16 16 O -0.52 -8.63 10.35 -46.09 -0.48 -9.10 16 17 C -0.10 -1.78 4.60 -26.55 -0.12 -1.90 16 18 C -0.16 -2.27 5.74 -26.59 -0.15 -2.43 16 19 C 0.06 0.85 6.84 37.21 0.25 1.11 16 20 O -0.37 -5.95 9.21 -55.55 -0.51 -6.46 16 21 C 0.07 1.13 4.66 37.20 0.17 1.30 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.11 2.85 5.17 -51.93 -0.27 2.58 16 24 H 0.03 0.55 5.46 -51.93 -0.28 0.27 16 25 H 0.05 1.21 5.67 -51.93 -0.29 0.91 16 26 H 0.03 0.57 6.17 -51.93 -0.32 0.25 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.39 4.92 9.10 45.56 0.41 5.34 16 29 H 0.08 1.61 7.48 -51.93 -0.39 1.22 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.13 6.60 -51.93 -0.34 0.79 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.66 5.95 -51.93 -0.31 1.35 16 LS Contribution 262.40 15.07 3.95 3.95 Total: -1.00 -31.30 262.40 -5.06 -36.36 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.17 Total: 5.59 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 0.01 Total: -9.90 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.77 Total: -25.48 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -1.19 Total: -26.70 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.44 Total: 16.17 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.30 -5.06 -36.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821972572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.454 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds