Wall clock time and date at job start Mon Mar 30 2020 04:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47071 * 2 1 4 4 H 1.09007 * 109.46705 * 176.89861 * 3 2 1 5 5 C 1.50698 * 109.47121 * 56.90074 * 3 2 1 6 6 H 1.08004 * 120.00021 * 240.41022 * 5 3 2 7 7 C 1.37875 * 120.00430 * 60.41180 * 5 3 2 8 8 N 1.31516 * 120.00383 * 208.65116 * 7 5 3 9 9 Si 1.86802 * 119.99849 * 28.65270 * 7 5 3 10 10 H 1.48501 * 109.47200 * 92.02526 * 9 7 5 11 11 H 1.48502 * 109.47229 * 212.02678 * 9 7 5 12 12 H 1.48499 * 109.47133 * 332.02798 * 9 7 5 13 13 C 1.52994 * 109.47307 * 296.89373 * 3 2 1 14 14 C 1.50702 * 109.51752 * 70.55575 * 13 3 2 15 15 O 1.20825 * 120.00051 * 24.52969 * 14 13 3 16 16 O 1.34232 * 120.00012 * 204.53003 * 14 13 3 17 17 C 1.53174 * 109.52610 * 190.74204 * 13 3 2 18 18 C 1.53174 * 109.04065 * 176.89199 * 17 13 3 19 19 C 1.53098 * 109.16029 * 303.02186 * 18 17 13 20 20 O 1.42903 * 109.41658 * 57.60537 * 19 18 17 21 21 C 1.42904 * 114.09923 * 298.84594 * 20 19 18 22 22 H 1.08994 * 109.47120 * 192.72347 * 1 2 3 23 23 H 1.09003 * 109.46802 * 312.71935 * 1 2 3 24 24 H 1.08995 * 109.47021 * 72.71759 * 1 2 3 25 25 H 1.09006 * 109.47014 * 120.00106 * 2 1 3 26 26 H 1.08996 * 109.46785 * 239.99852 * 2 1 3 27 27 H 0.96998 * 119.99880 * 179.97438 * 8 7 5 28 28 H 0.96696 * 117.00135 * 180.02562 * 16 14 13 29 29 H 1.09003 * 109.54107 * 296.76231 * 17 13 3 30 30 H 1.09002 * 109.54121 * 57.02049 * 17 13 3 31 31 H 1.08996 * 109.52429 * 183.11602 * 18 17 13 32 32 H 1.08996 * 109.52068 * 62.92030 * 18 17 13 33 33 H 1.09001 * 109.47607 * 297.62631 * 19 18 17 34 34 H 1.08995 * 109.48033 * 177.59274 * 19 18 17 35 35 H 1.09001 * 109.47973 * 301.17298 * 21 20 19 36 36 H 1.08997 * 109.47864 * 181.14106 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1287 1.4430 0.0556 5 6 1.4759 2.1747 1.1902 6 1 0.8558 3.0468 1.0436 7 6 1.7515 1.7315 2.4664 8 7 0.8919 1.9484 3.4378 9 14 3.3458 0.8230 2.8157 10 1 4.3856 1.7938 3.2420 11 1 3.1230 -0.1703 3.8969 12 1 3.7965 0.1233 1.5858 13 6 1.5949 2.1409 -1.2864 14 6 0.1063 2.3723 -1.2445 15 8 -0.4645 2.4424 -0.1819 16 8 -0.5854 2.5006 -2.3877 17 6 2.3195 3.4840 -1.4169 18 6 1.9252 4.1376 -2.7449 19 6 2.2600 3.1827 -3.8938 20 8 1.5782 1.9427 -3.6949 21 6 1.9423 1.2631 -2.4916 22 1 -0.3633 -1.0024 0.2263 23 1 -0.3633 0.6972 0.7550 24 1 -0.3633 0.3053 -0.9812 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.0856 1.6363 4.3356 28 1 -1.5379 2.6481 -2.3102 29 1 2.0327 4.1348 -0.5908 30 1 3.3970 3.3204 -1.3967 31 1 2.4787 5.0680 -2.8715 32 1 0.8554 4.3462 -2.7447 33 1 3.3353 3.0065 -3.9183 34 1 1.9423 3.6248 -4.8381 35 1 3.0135 1.0618 -2.4978 36 1 1.3958 0.3224 -2.4259 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821972572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:58 Heat of formation + Delta-G solvation = -147.021792 kcal Electronic energy + Delta-G solvation = -19738.739790 eV Core-core repulsion = 16801.705864 eV Total energy + Delta-G solvation = -2937.033926 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.09436 -39.40958 -37.65385 -36.14251 -34.33171 -33.78592 -31.55515 -29.03324 -26.14879 -25.45170 -24.92918 -23.34164 -21.54344 -19.95220 -18.83705 -18.52599 -17.36846 -17.05207 -16.69466 -16.21056 -15.94208 -15.10512 -14.87663 -14.67322 -14.52358 -14.49845 -14.13579 -13.58332 -13.39542 -13.04754 -12.82986 -12.52874 -12.41078 -12.12987 -12.07052 -11.87564 -11.69052 -11.65534 -11.38023 -11.08559 -10.68249 -10.61885 -10.26358 -9.86544 -8.13067 -5.91136 1.37095 1.42892 1.49049 1.70209 2.46659 2.49637 3.07809 3.15641 3.85654 3.91979 3.99447 4.14963 4.24636 4.39983 4.48335 4.57109 4.60223 4.73624 4.81385 4.85901 4.95338 4.98186 5.08414 5.10937 5.23659 5.33658 5.40741 5.49661 5.54560 5.76155 5.92627 6.07779 6.39821 6.55852 7.09878 7.50194 7.57994 9.02846 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.029913 B = 0.010388 C = 0.009743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.810743 B = 2694.875594 C = 2873.047377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.029 3.971 4 H 0.045 0.955 5 C -0.482 4.482 6 H 0.053 0.947 7 C 0.022 3.978 8 N -0.931 5.931 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.300 1.300 12 H -0.232 1.232 13 C -0.062 4.062 14 C 0.480 3.520 15 O -0.507 6.507 16 O -0.507 6.507 17 C -0.105 4.105 18 C -0.154 4.154 19 C 0.060 3.940 20 O -0.379 6.379 21 C 0.074 3.926 22 H 0.035 0.965 23 H 0.062 0.938 24 H 0.039 0.961 25 H 0.038 0.962 26 H 0.071 0.929 27 H 0.255 0.745 28 H 0.405 0.595 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 0.134 -15.718 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.010 3.990 4 H 0.063 0.937 5 C -0.520 4.520 6 H 0.071 0.929 7 C -0.175 4.175 8 N -0.571 5.571 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.227 1.227 12 H -0.154 1.154 13 C -0.063 4.063 14 C 0.323 3.677 15 O -0.394 6.394 16 O -0.319 6.319 17 C -0.143 4.143 18 C -0.191 4.191 19 C -0.016 4.016 20 O -0.297 6.297 21 C -0.003 4.003 22 H 0.054 0.946 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.263 0.737 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.094 0.906 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.358 -0.006 -15.418 16.022 hybrid contribution -0.210 -0.056 1.588 1.603 sum 4.148 -0.063 -13.830 14.439 Atomic orbital electron populations 1.22069 0.96884 1.00139 1.00568 1.21914 0.96048 0.98041 1.00031 1.19131 0.96375 0.92260 0.91240 0.93745 1.21185 1.28430 1.12990 0.89381 0.92918 1.25590 0.98457 0.96795 0.96694 1.70338 1.34731 1.49616 1.02387 0.86497 0.83385 0.78925 0.78931 1.20724 1.22711 1.15427 1.21091 0.87582 0.99183 0.98447 1.23298 0.91354 0.72327 0.80759 1.90894 1.71490 1.45200 1.31849 1.84707 1.26827 1.84292 1.36105 1.21576 1.00728 0.93867 0.98100 1.22274 1.02192 1.00096 0.94588 1.22714 0.96824 0.83837 0.98258 1.87966 1.67108 1.35053 1.39563 1.22721 1.00907 0.94437 0.82213 0.94588 0.91945 0.94211 0.94353 0.91094 0.93599 0.73709 0.93085 0.89148 0.88785 0.92311 0.91749 0.87233 0.90574 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.07 8.09 71.98 0.58 -5.48 16 2 C -0.12 -5.04 4.75 30.60 0.15 -4.89 16 3 C 0.03 1.25 1.24 -11.54 -0.01 1.23 16 4 H 0.04 1.84 6.63 -2.38 -0.02 1.83 16 5 C -0.48 -26.34 5.56 25.60 0.14 -26.20 16 6 H 0.05 3.30 5.67 -2.91 -0.02 3.28 16 7 C 0.02 1.25 5.16 84.65 0.44 1.69 16 8 N -0.93 -58.87 13.96 21.45 0.30 -58.57 16 9 Si 0.90 42.80 26.13 68.60 1.79 44.59 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.23 -9.79 6.04 99.48 0.60 -9.19 16 13 C -0.06 -2.23 0.29 -52.84 -0.02 -2.24 16 14 C 0.48 18.99 3.60 71.24 0.26 19.25 16 15 O -0.51 -25.23 10.87 21.97 0.24 -24.99 16 16 O -0.51 -16.05 10.35 -44.90 -0.46 -16.52 16 17 C -0.11 -3.41 4.60 30.71 0.14 -3.27 16 18 C -0.15 -3.88 5.74 30.69 0.18 -3.71 16 19 C 0.06 1.32 6.84 72.01 0.49 1.81 16 20 O -0.38 -10.61 9.21 -129.55 -1.19 -11.80 16 21 C 0.07 2.19 4.66 72.01 0.34 2.52 16 22 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.06 3.36 5.17 -2.39 -0.01 3.35 16 24 H 0.04 1.57 5.46 -2.39 -0.01 1.56 16 25 H 0.04 1.67 5.67 -2.38 -0.01 1.65 16 26 H 0.07 2.36 6.17 -2.39 -0.01 2.34 16 27 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 28 H 0.40 9.82 9.10 -74.06 -0.67 9.15 16 29 H 0.05 1.97 7.48 -2.39 -0.02 1.95 16 30 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.66 6.60 -2.39 -0.02 1.65 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.10 2.84 5.95 -2.39 -0.01 2.83 16 Total: -1.00 -70.98 262.40 3.67 -67.30 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.32 Total: 19.28 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 2.68 Total: -19.29 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.30 Total: -58.57 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -1.42 Total: -53.31 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.79 Total: 44.59 kcal Total: -70.98 3.67 -67.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821972572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.719 kcal (2) G-P(sol) polarization free energy of solvation -70.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds