Wall clock time and date at job start Mon Mar 30 2020 04:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.46752 * 2 1 4 4 H 1.09000 * 109.47005 * 179.51881 * 3 2 1 5 5 C 1.50700 * 109.46804 * 59.52354 * 3 2 1 6 6 H 1.07995 * 119.99579 * 245.90967 * 5 3 2 7 7 C 1.37875 * 120.00141 * 65.91964 * 5 3 2 8 8 N 1.31519 * 120.00004 * 190.56199 * 7 5 3 9 9 Si 1.86799 * 120.00287 * 10.55640 * 7 5 3 10 10 H 1.48495 * 109.47204 * 94.42367 * 9 7 5 11 11 H 1.48494 * 109.47404 * 214.42406 * 9 7 5 12 12 H 1.48503 * 109.46780 * 334.42327 * 9 7 5 13 13 C 1.52990 * 109.47264 * 299.52340 * 3 2 1 14 14 C 1.50706 * 110.45552 * 309.63825 * 13 3 2 15 15 O 1.20823 * 120.00386 * 346.31282 * 14 13 3 16 16 O 1.34236 * 119.99832 * 166.31311 * 14 13 3 17 17 C 1.54790 * 110.62730 * 72.29724 * 13 3 2 18 18 C 1.54472 * 103.93002 * 118.70186 * 17 13 3 19 19 O 1.44424 * 104.90154 * 24.00455 * 18 17 13 20 20 C 1.44428 * 105.27391 * 319.43440 * 19 18 17 21 21 H 1.08991 * 110.37563 * 281.67903 * 20 19 18 22 22 C 1.52997 * 110.37029 * 159.44909 * 20 19 18 23 23 H 1.09002 * 109.47225 * 68.65765 * 1 2 3 24 24 H 1.09007 * 109.47207 * 188.65025 * 1 2 3 25 25 H 1.08995 * 109.47956 * 308.64929 * 1 2 3 26 26 H 1.09004 * 109.47480 * 240.00211 * 2 1 3 27 27 H 1.09001 * 109.47165 * 119.99856 * 2 1 3 28 28 H 0.97001 * 119.99919 * 179.97438 * 8 7 5 29 29 H 0.96702 * 116.99691 * 179.97438 * 16 14 13 30 30 H 1.09006 * 110.60253 * 0.08640 * 17 13 3 31 31 H 1.09006 * 110.55548 * 237.29370 * 17 13 3 32 32 H 1.08999 * 110.37015 * 265.12116 * 18 17 13 33 33 H 1.09000 * 110.37403 * 142.89168 * 18 17 13 34 34 H 1.09007 * 109.47290 * 61.45685 * 22 20 19 35 35 H 1.09005 * 109.47268 * 181.45078 * 22 20 19 36 36 H 1.08999 * 109.47615 * 301.45501 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 3.1298 1.4426 0.0086 5 6 1.5278 2.1563 1.2245 6 1 0.8313 2.9751 1.1205 7 6 1.9486 1.7641 2.4775 8 7 1.3532 2.2390 3.5498 9 14 3.3643 0.5580 2.6524 10 1 4.6331 1.3073 2.8360 11 1 3.1292 -0.3138 3.8312 12 1 3.4560 -0.2783 1.4286 13 6 1.5397 2.1603 -1.2551 14 6 1.8370 1.3407 -2.4843 15 8 2.6048 0.4100 -2.4188 16 8 1.2488 1.6445 -3.6521 17 6 0.0225 2.4489 -1.1502 18 6 -0.0682 3.9896 -1.2140 19 8 1.1348 4.4045 -1.8970 20 6 2.1818 3.5607 -1.3700 21 1 2.4970 3.9152 -0.3887 22 6 3.3721 3.5262 -2.3305 23 1 -0.3634 0.3740 -0.9572 24 1 -0.3634 -1.0160 0.1546 25 1 -0.3635 0.6418 0.8025 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6490 1.9627 4.4313 29 1 1.4711 1.0904 -4.4128 30 1 -0.3731 2.0819 -0.2031 31 1 -0.5113 1.9998 -1.9877 32 1 -0.0980 4.4099 -0.2088 33 1 -0.9494 4.2948 -1.7784 34 1 3.7782 4.5317 -2.4422 35 1 4.1421 2.8658 -1.9314 36 1 3.0445 3.1567 -3.3022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821974095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:20 Heat of formation + Delta-G solvation = -129.207595 kcal Electronic energy + Delta-G solvation = -19653.692227 eV Core-core repulsion = 16717.430783 eV Total energy + Delta-G solvation = -2936.261444 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83406 -38.41558 -36.14640 -35.08384 -32.10321 -31.56751 -30.27832 -27.71372 -25.96861 -23.61237 -22.80966 -21.31841 -20.54068 -18.88990 -17.50020 -16.52464 -16.21974 -15.73047 -14.98587 -14.73252 -14.46471 -14.05203 -13.39338 -13.09272 -13.06408 -12.81222 -12.43286 -12.05639 -11.87834 -11.45037 -11.34071 -11.21362 -11.00914 -10.61403 -10.45498 -10.37032 -10.20259 -9.85953 -9.66918 -9.64753 -9.24368 -9.06208 -8.82675 -8.46274 -6.15429 -4.12939 2.66528 3.27044 3.37715 3.43991 3.50522 4.39809 4.41120 5.07618 5.17103 5.22347 5.42440 5.63716 5.74262 5.76743 5.95173 5.96958 6.02241 6.23233 6.24888 6.29751 6.37785 6.42125 6.53154 6.56652 6.74229 6.76429 6.94952 7.05721 7.19468 7.26920 7.33834 7.40897 7.70228 8.32791 8.44441 8.86909 9.48722 10.95968 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.024511 B = 0.011438 C = 0.010427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.086357 B = 2447.341242 C = 2684.588134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.042 3.958 4 H 0.033 0.967 5 C -0.518 4.518 6 H 0.083 0.917 7 C 0.082 3.918 8 N -0.892 5.892 9 Si 0.854 3.146 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.244 1.244 13 C -0.057 4.057 14 C 0.493 3.507 15 O -0.513 6.513 16 O -0.515 6.515 17 C -0.145 4.145 18 C 0.049 3.951 19 O -0.377 6.377 20 C 0.091 3.909 21 H 0.102 0.898 22 C -0.157 4.157 23 H 0.041 0.959 24 H 0.027 0.973 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.264 0.736 29 H 0.396 0.604 30 H 0.121 0.879 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 -0.046 -10.450 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.023 3.977 4 H 0.051 0.949 5 C -0.555 4.555 6 H 0.101 0.899 7 C -0.121 4.121 8 N -0.529 5.529 9 Si 0.681 3.319 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.168 1.168 13 C -0.059 4.059 14 C 0.337 3.663 15 O -0.401 6.401 16 O -0.326 6.326 17 C -0.182 4.182 18 C -0.028 4.028 19 O -0.297 6.297 20 C 0.034 3.966 21 H 0.119 0.881 22 C -0.214 4.214 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.252 0.748 30 H 0.139 0.861 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.781 0.113 -10.041 10.072 hybrid contribution 0.918 -1.274 -0.084 1.573 sum 0.137 -1.161 -10.125 10.193 Atomic orbital electron populations 1.22091 0.97215 0.99757 1.01511 1.22230 0.95598 0.98753 1.01121 1.18995 0.96271 0.92061 0.90353 0.94924 1.20874 1.28292 1.18131 0.88225 0.89923 1.24852 0.95985 0.95522 0.95745 1.69917 1.40076 1.44799 0.98076 0.87371 0.83545 0.82321 0.78638 1.20744 1.21473 1.16843 1.22029 0.98074 0.95338 0.90415 1.23679 0.76248 0.82337 0.84064 1.90604 1.34702 1.29565 1.85195 1.84680 1.68053 1.59765 1.20097 1.23557 0.93754 0.96162 1.04740 1.23415 0.87813 0.94240 0.97299 1.89021 1.17787 1.58760 1.64093 1.23027 0.88279 0.86958 0.98376 0.88070 1.21987 0.97387 1.02774 0.99239 0.93964 0.95388 0.90245 0.92524 0.92472 0.92616 0.74767 0.86127 0.91559 0.91545 0.90086 0.91534 0.91027 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.20 37.15 0.30 -2.62 16 2 C -0.14 -3.05 4.61 -26.73 -0.12 -3.17 16 3 C 0.04 0.94 0.91 -91.77 -0.08 0.86 16 4 H 0.03 0.77 6.87 -51.93 -0.36 0.42 16 5 C -0.52 -12.89 5.81 -34.44 -0.20 -13.09 16 6 H 0.08 2.15 5.90 -52.49 -0.31 1.84 16 7 C 0.08 2.18 5.40 -17.82 -0.10 2.09 16 8 N -0.89 -25.39 13.96 55.43 0.77 -24.62 16 9 Si 0.85 20.53 25.83 -169.99 -4.39 16.14 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.24 -5.70 5.15 56.52 0.29 -5.41 16 13 C -0.06 -1.11 0.40 -153.94 -0.06 -1.17 16 14 C 0.49 9.00 4.36 36.01 0.16 9.16 16 15 O -0.51 -10.41 14.55 -18.75 -0.27 -10.68 16 16 O -0.52 -7.67 11.94 -39.27 -0.47 -8.14 16 17 C -0.15 -2.60 3.43 -25.02 -0.09 -2.69 16 18 C 0.05 0.84 7.37 37.93 0.28 1.12 16 19 O -0.38 -7.01 11.34 -35.23 -0.40 -7.41 16 20 C 0.09 1.71 3.23 -25.95 -0.08 1.63 16 21 H 0.10 2.06 7.15 -51.93 -0.37 1.69 16 22 C -0.16 -2.57 8.79 37.16 0.33 -2.25 16 23 H 0.04 0.75 5.24 -51.93 -0.27 0.48 16 24 H 0.03 0.50 8.14 -51.92 -0.42 0.07 16 25 H 0.08 1.69 5.94 -51.93 -0.31 1.38 16 26 H 0.06 1.24 5.32 -51.93 -0.28 0.96 16 27 H 0.06 1.32 4.53 -51.93 -0.24 1.08 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.40 3.96 9.10 45.56 0.41 4.37 16 30 H 0.12 2.33 3.83 -51.93 -0.20 2.13 16 31 H 0.07 1.10 6.73 -51.93 -0.35 0.75 16 32 H 0.07 1.19 7.46 -51.93 -0.39 0.80 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.93 6.32 -51.93 -0.33 0.60 16 LS Contribution 264.79 15.07 3.99 3.99 Total: -1.00 -29.42 264.79 -4.35 -33.77 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -3.92 Total: 7.08 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 0.33 Total: -10.14 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.77 Total: -24.62 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -1.14 Total: -26.23 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.39 Total: 16.14 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.42 -4.35 -33.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821974095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.433 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds