Wall clock time and date at job start Mon Mar 30 2020 04:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.46752 * 2 1 4 4 H 1.09000 * 109.47005 * 179.51881 * 3 2 1 5 5 C 1.50700 * 109.46804 * 59.52354 * 3 2 1 6 6 H 1.07995 * 119.99579 * 245.90967 * 5 3 2 7 7 C 1.37875 * 120.00141 * 65.91964 * 5 3 2 8 8 N 1.31519 * 120.00004 * 190.56199 * 7 5 3 9 9 Si 1.86799 * 120.00287 * 10.55640 * 7 5 3 10 10 H 1.48495 * 109.47204 * 94.42367 * 9 7 5 11 11 H 1.48494 * 109.47404 * 214.42406 * 9 7 5 12 12 H 1.48503 * 109.46780 * 334.42327 * 9 7 5 13 13 C 1.52990 * 109.47264 * 299.52340 * 3 2 1 14 14 C 1.50706 * 110.45552 * 309.63825 * 13 3 2 15 15 O 1.20823 * 120.00386 * 346.31282 * 14 13 3 16 16 O 1.34236 * 119.99832 * 166.31311 * 14 13 3 17 17 C 1.54790 * 110.62730 * 72.29724 * 13 3 2 18 18 C 1.54472 * 103.93002 * 118.70186 * 17 13 3 19 19 O 1.44424 * 104.90154 * 24.00455 * 18 17 13 20 20 C 1.44428 * 105.27391 * 319.43440 * 19 18 17 21 21 H 1.08991 * 110.37563 * 281.67903 * 20 19 18 22 22 C 1.52997 * 110.37029 * 159.44909 * 20 19 18 23 23 H 1.09002 * 109.47225 * 68.65765 * 1 2 3 24 24 H 1.09007 * 109.47207 * 188.65025 * 1 2 3 25 25 H 1.08995 * 109.47956 * 308.64929 * 1 2 3 26 26 H 1.09004 * 109.47480 * 240.00211 * 2 1 3 27 27 H 1.09001 * 109.47165 * 119.99856 * 2 1 3 28 28 H 0.97001 * 119.99919 * 179.97438 * 8 7 5 29 29 H 0.96702 * 116.99691 * 179.97438 * 16 14 13 30 30 H 1.09006 * 110.60253 * 0.08640 * 17 13 3 31 31 H 1.09006 * 110.55548 * 237.29370 * 17 13 3 32 32 H 1.08999 * 110.37015 * 265.12116 * 18 17 13 33 33 H 1.09000 * 110.37403 * 142.89168 * 18 17 13 34 34 H 1.09007 * 109.47290 * 61.45685 * 22 20 19 35 35 H 1.09005 * 109.47268 * 181.45078 * 22 20 19 36 36 H 1.08999 * 109.47615 * 301.45501 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 3.1298 1.4426 0.0086 5 6 1.5278 2.1563 1.2245 6 1 0.8313 2.9751 1.1205 7 6 1.9486 1.7641 2.4775 8 7 1.3532 2.2390 3.5498 9 14 3.3643 0.5580 2.6524 10 1 4.6331 1.3073 2.8360 11 1 3.1292 -0.3138 3.8312 12 1 3.4560 -0.2783 1.4286 13 6 1.5397 2.1603 -1.2551 14 6 1.8370 1.3407 -2.4843 15 8 2.6048 0.4100 -2.4188 16 8 1.2488 1.6445 -3.6521 17 6 0.0225 2.4489 -1.1502 18 6 -0.0682 3.9896 -1.2140 19 8 1.1348 4.4045 -1.8970 20 6 2.1818 3.5607 -1.3700 21 1 2.4970 3.9152 -0.3887 22 6 3.3721 3.5262 -2.3305 23 1 -0.3634 0.3740 -0.9572 24 1 -0.3634 -1.0160 0.1546 25 1 -0.3635 0.6418 0.8025 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6490 1.9627 4.4313 29 1 1.4711 1.0904 -4.4128 30 1 -0.3731 2.0819 -0.2031 31 1 -0.5113 1.9998 -1.9877 32 1 -0.0980 4.4099 -0.2088 33 1 -0.9494 4.2948 -1.7784 34 1 3.7782 4.5317 -2.4422 35 1 4.1421 2.8658 -1.9314 36 1 3.0445 3.1567 -3.3022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821974095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:20 Heat of formation + Delta-G solvation = -149.824944 kcal Electronic energy + Delta-G solvation = -19654.586263 eV Core-core repulsion = 16717.430783 eV Total energy + Delta-G solvation = -2937.155479 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.30625 -39.84282 -37.62572 -36.61936 -34.06657 -33.00934 -31.80524 -29.41899 -27.54540 -25.30221 -24.30655 -22.76324 -22.18214 -20.49286 -18.87973 -18.37448 -17.70384 -17.24800 -16.47377 -16.34224 -16.13794 -15.58964 -15.09756 -14.77467 -14.64687 -14.30090 -14.13220 -13.43795 -13.30153 -12.99780 -12.93589 -12.77053 -12.60594 -12.25961 -12.08582 -12.02385 -11.86455 -11.53637 -11.33390 -11.24072 -10.84363 -10.83711 -10.51770 -10.43045 -8.23216 -6.20448 1.23821 1.32572 1.40813 1.49316 2.18438 2.39545 2.99080 3.13218 3.60679 3.76289 3.96172 4.23853 4.33159 4.36367 4.43156 4.51496 4.64039 4.66191 4.73986 4.78911 4.91509 5.04344 5.09729 5.13856 5.18885 5.21602 5.35932 5.45849 5.47822 5.61783 5.66766 5.82655 5.94210 6.36373 6.82864 7.11424 7.42563 8.90995 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.024511 B = 0.011438 C = 0.010427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.086357 B = 2447.341242 C = 2684.588134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.140 4.140 3 C 0.042 3.958 4 H 0.018 0.982 5 C -0.494 4.494 6 H 0.065 0.935 7 C 0.033 3.967 8 N -0.935 5.935 9 Si 0.898 3.102 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.233 1.233 13 C -0.064 4.064 14 C 0.504 3.496 15 O -0.535 6.535 16 O -0.504 6.504 17 C -0.141 4.141 18 C 0.048 3.952 19 O -0.379 6.379 20 C 0.089 3.911 21 H 0.076 0.924 22 C -0.152 4.152 23 H 0.061 0.939 24 H 0.044 0.956 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.262 0.738 29 H 0.421 0.579 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 -0.478 -12.794 12.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C 0.023 3.977 4 H 0.036 0.964 5 C -0.532 4.532 6 H 0.083 0.917 7 C -0.165 4.165 8 N -0.575 5.575 9 Si 0.725 3.275 10 H -0.209 1.209 11 H -0.219 1.219 12 H -0.156 1.156 13 C -0.065 4.065 14 C 0.349 3.651 15 O -0.426 6.426 16 O -0.317 6.317 17 C -0.178 4.178 18 C -0.028 4.028 19 O -0.299 6.299 20 C 0.032 3.968 21 H 0.094 0.906 22 C -0.209 4.209 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.282 0.718 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.996 -0.323 -12.432 12.476 hybrid contribution 0.927 -1.078 0.558 1.527 sum -0.069 -1.401 -11.874 11.957 Atomic orbital electron populations 1.21993 0.95560 1.00483 1.01744 1.22195 0.97097 0.97905 1.00550 1.18876 0.95326 0.92640 0.90841 0.96384 1.21038 1.26376 1.16746 0.89048 0.91692 1.25436 0.97922 0.97274 0.95857 1.70020 1.41957 1.47074 0.98465 0.86657 0.81254 0.80892 0.78723 1.20895 1.21896 1.15617 1.21880 0.99000 0.95485 0.90177 1.23157 0.75910 0.81504 0.84573 1.90605 1.35757 1.30475 1.85722 1.84587 1.67058 1.60081 1.19962 1.23497 0.92833 0.96850 1.04657 1.23500 0.88521 0.93620 0.97151 1.89017 1.18069 1.58856 1.63926 1.22947 0.89260 0.86593 0.98049 0.90624 1.21959 0.96251 1.03903 0.98823 0.92060 0.93695 0.92403 0.91989 0.94056 0.92867 0.71766 0.87839 0.89451 0.93156 0.86815 0.89839 0.91363 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 8.20 71.98 0.59 -4.71 16 2 C -0.14 -5.94 4.61 30.59 0.14 -5.79 16 3 C 0.04 1.86 0.91 -11.54 -0.01 1.84 16 4 H 0.02 0.85 6.87 -2.39 -0.02 0.83 16 5 C -0.49 -24.92 5.81 25.60 0.15 -24.77 16 6 H 0.07 3.47 5.90 -2.91 -0.02 3.45 16 7 C 0.03 1.81 5.40 84.65 0.46 2.27 16 8 N -0.94 -54.69 13.96 21.45 0.30 -54.39 16 9 Si 0.90 42.77 25.83 68.60 1.77 44.54 16 10 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 12 H -0.23 -10.56 5.15 99.48 0.51 -10.05 16 13 C -0.06 -2.37 0.40 -51.81 -0.02 -2.39 16 14 C 0.50 16.93 4.36 71.24 0.31 17.24 16 15 O -0.54 -20.34 14.55 21.97 0.32 -20.02 16 16 O -0.50 -12.87 11.94 -51.48 -0.61 -13.48 16 17 C -0.14 -4.79 3.43 31.71 0.11 -4.68 16 18 C 0.05 1.57 7.37 72.48 0.53 2.10 16 19 O -0.38 -13.31 11.34 -148.98 -1.69 -15.00 16 20 C 0.09 3.24 3.23 31.10 0.10 3.34 16 21 H 0.08 3.11 7.15 -2.39 -0.02 3.09 16 22 C -0.15 -4.68 8.79 71.98 0.63 -4.04 16 23 H 0.06 2.04 5.24 -2.39 -0.01 2.03 16 24 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.06 2.43 5.94 -2.39 -0.01 2.42 16 26 H 0.06 2.59 5.32 -2.39 -0.01 2.58 16 27 H 0.04 1.86 4.53 -2.39 -0.01 1.85 16 28 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.42 6.46 9.10 -74.06 -0.67 5.79 16 30 H 0.10 3.91 3.83 -2.38 -0.01 3.90 16 31 H 0.09 2.58 6.73 -2.38 -0.02 2.56 16 32 H 0.05 1.78 7.46 -2.39 -0.02 1.77 16 33 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.07 1.94 6.32 -2.39 -0.02 1.93 16 Total: -1.00 -62.46 264.79 3.32 -59.14 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.24 Total: 18.80 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 2.99 Total: -19.59 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.30 Total: -54.39 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -1.99 Total: -48.51 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.77 Total: 44.54 kcal Total: -62.46 3.32 -59.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821974095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.686 kcal (2) G-P(sol) polarization free energy of solvation -62.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds