Wall clock time and date at job start Mon Mar 30 2020 04:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47570 * 2 1 4 4 H 1.09002 * 109.46889 * 306.53810 * 3 2 1 5 5 C 1.50697 * 109.47476 * 186.53630 * 3 2 1 6 6 H 1.08002 * 119.99381 * 245.71906 * 5 3 2 7 7 C 1.37874 * 120.00248 * 65.44859 * 5 3 2 8 8 N 1.31519 * 119.99774 * 0.26918 * 7 5 3 9 9 Si 1.86796 * 119.99952 * 180.27784 * 7 5 3 10 10 H 1.48496 * 109.47440 * 59.99925 * 9 7 5 11 11 H 1.48504 * 109.46823 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47160 * 299.99394 * 9 7 5 13 13 C 1.53004 * 109.46852 * 66.53126 * 3 2 1 14 14 C 1.50698 * 110.45560 * 55.27967 * 13 3 2 15 15 O 1.20828 * 119.99750 * 359.97438 * 14 13 3 16 16 O 1.34224 * 119.99982 * 179.97438 * 14 13 3 17 17 C 1.54503 * 110.51199 * 292.67497 * 13 3 2 18 18 C 1.54802 * 103.91002 * 241.38824 * 17 13 3 19 19 O 1.44424 * 104.80375 * 335.91408 * 18 17 13 20 20 C 1.44432 * 105.27242 * 40.59093 * 19 18 17 21 21 H 1.09001 * 110.37065 * 78.31520 * 20 19 18 22 22 C 1.52998 * 110.46515 * 200.60673 * 20 19 18 23 23 H 1.09002 * 109.47026 * 287.98010 * 1 2 3 24 24 H 1.08998 * 109.47467 * 47.97871 * 1 2 3 25 25 H 1.09004 * 109.47451 * 167.98199 * 1 2 3 26 26 H 1.09004 * 109.46605 * 240.00009 * 2 1 3 27 27 H 1.09000 * 109.47190 * 120.00695 * 2 1 3 28 28 H 0.96996 * 119.99705 * 180.02562 * 8 7 5 29 29 H 0.96700 * 116.99865 * 180.02562 * 16 14 13 30 30 H 1.09000 * 110.51613 * 359.97438 * 17 13 3 31 31 H 1.08996 * 110.51164 * 122.71345 * 17 13 3 32 32 H 1.09009 * 110.30616 * 217.12190 * 18 17 13 33 33 H 1.09000 * 110.43852 * 94.78284 * 18 17 13 34 34 H 1.08998 * 109.47283 * 181.56718 * 22 20 19 35 35 H 1.08999 * 109.47124 * 301.56472 * 22 20 19 36 36 H 1.09000 * 109.46864 * 61.56619 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5843 1.9889 -0.8257 5 6 3.5383 1.4454 -0.1617 6 1 4.1674 1.7985 0.6420 7 6 4.1062 0.9923 -1.3335 8 7 3.3400 0.5623 -2.3122 9 14 5.9637 0.9889 -1.5310 10 1 6.5714 0.1306 -0.4825 11 1 6.3179 0.4575 -2.8717 12 1 6.4784 2.3751 -1.3956 13 6 1.6684 2.1147 1.3232 14 6 2.1907 1.3119 2.4867 15 8 2.8062 0.2912 2.2886 16 8 1.9722 1.7308 3.7431 17 6 0.1371 2.2897 1.4302 18 6 -0.0564 3.8226 1.5272 19 8 1.1958 4.3204 2.0469 20 6 2.2187 3.5574 1.3706 21 1 2.3712 3.9387 0.3609 22 6 3.5289 3.6022 2.1593 23 1 -0.3633 0.3172 0.9775 24 1 -0.3634 0.6879 -0.7634 25 1 -0.3634 -1.0052 -0.2140 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.7395 0.2432 -3.1364 29 1 2.3268 1.1828 4.4565 30 1 -0.3553 1.8978 0.5403 31 1 -0.2419 1.7978 2.3260 32 1 -0.8717 4.0585 2.2112 33 1 -0.2527 4.2445 0.5415 34 1 4.2961 3.0453 1.6214 35 1 3.8471 4.6380 2.2769 36 1 3.3770 3.1550 3.1417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821974100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:28 Heat of formation + Delta-G solvation = -124.629192 kcal Electronic energy + Delta-G solvation = -19604.687775 eV Core-core repulsion = 16668.624865 eV Total energy + Delta-G solvation = -2936.062910 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.63135 -38.22159 -35.95181 -34.63462 -32.22027 -31.54438 -30.05213 -27.58231 -25.68678 -23.10600 -22.86724 -21.38854 -20.26721 -18.93847 -17.23417 -16.58722 -15.97338 -15.59121 -14.95667 -14.82744 -14.32522 -13.81131 -13.16607 -12.92295 -12.76078 -12.64755 -12.04850 -11.88216 -11.56265 -11.36026 -11.18858 -11.02576 -10.84881 -10.69005 -10.56839 -10.40129 -10.30628 -9.86491 -9.63704 -9.31505 -9.06668 -8.95896 -8.61096 -8.24468 -5.97344 -3.99638 3.00274 3.34267 3.38693 3.42536 3.73615 4.41097 4.47428 5.13978 5.28832 5.36318 5.42607 5.56758 5.71273 5.98615 5.99651 6.06300 6.19210 6.23630 6.26184 6.33709 6.45313 6.45986 6.54855 6.60555 6.78467 6.92565 7.08353 7.28718 7.37872 7.43219 7.77909 7.99161 8.07016 8.41914 8.72571 8.98558 9.62770 11.10523 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.011026 C = 0.009934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.664608 B = 2538.767238 C = 2817.809447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.135 4.135 3 C 0.076 3.924 4 H 0.044 0.956 5 C -0.504 4.504 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.891 5.891 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C -0.063 4.063 14 C 0.490 3.510 15 O -0.480 6.480 16 O -0.524 6.524 17 C -0.160 4.160 18 C 0.047 3.953 19 O -0.378 6.378 20 C 0.100 3.900 21 H 0.087 0.913 22 C -0.165 4.165 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.031 0.969 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.260 0.740 29 H 0.392 0.608 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 3.683 7.381 9.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.172 4.172 3 C 0.058 3.942 4 H 0.062 0.938 5 C -0.541 4.541 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 C 0.332 3.668 15 O -0.365 6.365 16 O -0.336 6.336 17 C -0.198 4.198 18 C -0.030 4.030 19 O -0.298 6.298 20 C 0.043 3.957 21 H 0.105 0.895 22 C -0.221 4.221 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.249 0.751 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.337 3.725 6.958 9.527 hybrid contribution 1.202 -0.684 0.122 1.389 sum -4.135 3.041 7.080 8.745 Atomic orbital electron populations 1.22336 1.00220 0.99455 0.99696 1.21955 0.90936 1.00300 1.04051 1.18692 0.96680 0.92135 0.86722 0.93831 1.21152 0.90864 1.42104 1.00022 0.92086 1.24866 0.97534 0.95328 0.95985 1.69902 1.34564 1.43160 1.05370 0.86758 0.86419 0.78334 0.77142 1.20329 1.21409 1.20307 1.22217 0.94325 0.95745 0.94199 1.23298 0.76716 0.84080 0.82755 1.90642 1.36541 1.24545 1.84739 1.84706 1.75394 1.56140 1.17319 1.23727 0.95453 0.96733 1.03847 1.23420 0.87773 0.93138 0.98670 1.89065 1.15157 1.60497 1.65031 1.22863 0.88474 0.87737 0.96640 0.89526 1.22245 0.96582 1.02416 1.00873 0.93726 0.93474 0.94982 0.89812 0.91411 0.93067 0.75147 0.87613 0.91125 0.89858 0.92464 0.89239 0.92511 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 8.20 37.16 0.30 -2.75 16 2 C -0.13 -3.16 5.02 -26.74 -0.13 -3.29 16 3 C 0.08 1.78 0.98 -91.78 -0.09 1.69 16 4 H 0.04 1.10 8.07 -51.93 -0.42 0.68 16 5 C -0.50 -13.14 6.59 -34.44 -0.23 -13.37 16 6 H 0.06 1.58 4.41 -52.49 -0.23 1.35 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.96 11.73 55.43 0.65 -24.31 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C -0.06 -1.26 0.39 -154.09 -0.06 -1.32 16 14 C 0.49 9.76 4.63 36.00 0.17 9.92 16 15 O -0.48 -11.03 13.28 -18.75 -0.25 -11.28 16 16 O -0.52 -8.51 11.49 -39.24 -0.45 -8.96 16 17 C -0.16 -2.69 4.36 -24.99 -0.11 -2.79 16 18 C 0.05 0.72 7.64 38.11 0.29 1.02 16 19 O -0.38 -6.89 11.35 -35.23 -0.40 -7.29 16 20 C 0.10 1.93 2.81 -25.95 -0.07 1.86 16 21 H 0.09 1.76 7.82 -51.93 -0.41 1.35 16 22 C -0.16 -3.04 8.65 37.16 0.32 -2.72 16 23 H 0.04 0.77 5.29 -51.93 -0.27 0.49 16 24 H 0.05 0.87 7.24 -51.93 -0.38 0.49 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 2.23 6.41 -51.93 -0.33 1.89 16 27 H 0.07 1.67 5.05 -51.93 -0.26 1.41 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 4.56 9.10 45.56 0.41 4.97 16 30 H 0.11 1.74 4.38 -51.93 -0.23 1.51 16 31 H 0.07 1.12 7.35 -51.93 -0.38 0.74 16 32 H 0.08 1.08 8.14 -51.92 -0.42 0.65 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.80 5.39 -51.93 -0.28 1.52 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.16 5.45 -51.93 -0.28 0.88 16 LS Contribution 270.10 15.07 4.07 4.07 Total: -1.00 -29.94 270.10 -4.99 -34.93 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -3.89 Total: 6.68 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 0.30 Total: -10.11 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.65 Total: -24.31 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.10 Total: -27.53 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.94 -4.99 -34.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821974100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.698 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds