Wall clock time and date at job start Mon Mar 30 2020 04:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47570 * 2 1 4 4 H 1.09002 * 109.46889 * 306.53810 * 3 2 1 5 5 C 1.50697 * 109.47476 * 186.53630 * 3 2 1 6 6 H 1.08002 * 119.99381 * 245.71906 * 5 3 2 7 7 C 1.37874 * 120.00248 * 65.44859 * 5 3 2 8 8 N 1.31519 * 119.99774 * 0.26918 * 7 5 3 9 9 Si 1.86796 * 119.99952 * 180.27784 * 7 5 3 10 10 H 1.48496 * 109.47440 * 59.99925 * 9 7 5 11 11 H 1.48504 * 109.46823 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47160 * 299.99394 * 9 7 5 13 13 C 1.53004 * 109.46852 * 66.53126 * 3 2 1 14 14 C 1.50698 * 110.45560 * 55.27967 * 13 3 2 15 15 O 1.20828 * 119.99750 * 359.97438 * 14 13 3 16 16 O 1.34224 * 119.99982 * 179.97438 * 14 13 3 17 17 C 1.54503 * 110.51199 * 292.67497 * 13 3 2 18 18 C 1.54802 * 103.91002 * 241.38824 * 17 13 3 19 19 O 1.44424 * 104.80375 * 335.91408 * 18 17 13 20 20 C 1.44432 * 105.27242 * 40.59093 * 19 18 17 21 21 H 1.09001 * 110.37065 * 78.31520 * 20 19 18 22 22 C 1.52998 * 110.46515 * 200.60673 * 20 19 18 23 23 H 1.09002 * 109.47026 * 287.98010 * 1 2 3 24 24 H 1.08998 * 109.47467 * 47.97871 * 1 2 3 25 25 H 1.09004 * 109.47451 * 167.98199 * 1 2 3 26 26 H 1.09004 * 109.46605 * 240.00009 * 2 1 3 27 27 H 1.09000 * 109.47190 * 120.00695 * 2 1 3 28 28 H 0.96996 * 119.99705 * 180.02562 * 8 7 5 29 29 H 0.96700 * 116.99865 * 180.02562 * 16 14 13 30 30 H 1.09000 * 110.51613 * 359.97438 * 17 13 3 31 31 H 1.08996 * 110.51164 * 122.71345 * 17 13 3 32 32 H 1.09009 * 110.30616 * 217.12190 * 18 17 13 33 33 H 1.09000 * 110.43852 * 94.78284 * 18 17 13 34 34 H 1.08998 * 109.47283 * 181.56718 * 22 20 19 35 35 H 1.08999 * 109.47124 * 301.56472 * 22 20 19 36 36 H 1.09000 * 109.46864 * 61.56619 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5843 1.9889 -0.8257 5 6 3.5383 1.4454 -0.1617 6 1 4.1674 1.7985 0.6420 7 6 4.1062 0.9923 -1.3335 8 7 3.3400 0.5623 -2.3122 9 14 5.9637 0.9889 -1.5310 10 1 6.5714 0.1306 -0.4825 11 1 6.3179 0.4575 -2.8717 12 1 6.4784 2.3751 -1.3956 13 6 1.6684 2.1147 1.3232 14 6 2.1907 1.3119 2.4867 15 8 2.8062 0.2912 2.2886 16 8 1.9722 1.7308 3.7431 17 6 0.1371 2.2897 1.4302 18 6 -0.0564 3.8226 1.5272 19 8 1.1958 4.3204 2.0469 20 6 2.2187 3.5574 1.3706 21 1 2.3712 3.9387 0.3609 22 6 3.5289 3.6022 2.1593 23 1 -0.3633 0.3172 0.9775 24 1 -0.3634 0.6879 -0.7634 25 1 -0.3634 -1.0052 -0.2140 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.7395 0.2432 -3.1364 29 1 2.3268 1.1828 4.4565 30 1 -0.3553 1.8978 0.5403 31 1 -0.2419 1.7978 2.3260 32 1 -0.8717 4.0585 2.2112 33 1 -0.2527 4.2445 0.5415 34 1 4.2961 3.0453 1.6214 35 1 3.8471 4.6380 2.2769 36 1 3.3770 3.1550 3.1417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821974100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:27 Heat of formation + Delta-G solvation = -144.936513 kcal Electronic energy + Delta-G solvation = -19605.568367 eV Core-core repulsion = 16668.624865 eV Total energy + Delta-G solvation = -2936.943501 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.16560 -39.68590 -37.51105 -36.27694 -34.10919 -33.05755 -31.58126 -29.30370 -27.28781 -24.90794 -24.36991 -22.77636 -21.98335 -20.52405 -18.73938 -18.50445 -17.45819 -17.17535 -16.59704 -16.29871 -15.98251 -15.32071 -14.83174 -14.59974 -14.29714 -14.19251 -13.66918 -13.39658 -13.29305 -13.00108 -12.79536 -12.71679 -12.49593 -12.40376 -12.37340 -11.95372 -11.78137 -11.50226 -11.38655 -10.90153 -10.76575 -10.59283 -10.44374 -10.22115 -8.03462 -6.08913 1.40065 1.42407 1.45103 1.47794 2.31499 2.46759 3.04244 3.27951 3.73146 3.84252 4.02326 4.22057 4.34931 4.49393 4.57765 4.62673 4.71305 4.75036 4.82329 4.92330 4.93429 5.05196 5.07383 5.12188 5.25635 5.31668 5.42634 5.59115 5.75272 5.78747 5.97015 6.07560 6.14736 6.45989 6.96297 7.28602 7.55115 9.03375 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.011026 C = 0.009934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.664608 B = 2538.767238 C = 2817.809447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.079 3.921 4 H 0.021 0.979 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.934 3.066 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.267 1.267 13 C -0.070 4.070 14 C 0.498 3.502 15 O -0.518 6.518 16 O -0.511 6.511 17 C -0.157 4.157 18 C 0.045 3.955 19 O -0.383 6.383 20 C 0.102 3.898 21 H 0.070 0.930 22 C -0.161 4.161 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.256 0.744 29 H 0.416 0.584 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.435 4.657 8.965 11.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.060 3.940 4 H 0.039 0.961 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.184 4.184 8 N -0.559 5.559 9 Si 0.761 3.239 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.192 1.192 13 C -0.071 4.071 14 C 0.341 3.659 15 O -0.406 6.406 16 O -0.324 6.324 17 C -0.194 4.194 18 C -0.031 4.031 19 O -0.302 6.302 20 C 0.045 3.955 21 H 0.088 0.912 22 C -0.218 4.218 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.276 0.724 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.369 4.721 8.575 11.679 hybrid contribution 1.493 -0.965 -0.289 1.801 sum -4.876 3.756 8.286 10.322 Atomic orbital electron populations 1.22227 0.96770 1.00452 1.01288 1.21788 0.94079 0.99609 1.01421 1.18506 0.95004 0.92235 0.88237 0.96149 1.21536 0.92668 1.40617 0.99550 0.92217 1.25524 1.00869 0.95762 0.96227 1.70022 1.35699 1.44504 1.05647 0.85972 0.82611 0.78583 0.76686 1.20895 1.21346 1.19172 1.22059 0.96895 0.95623 0.92560 1.23157 0.75782 0.83216 0.83738 1.90641 1.38308 1.26190 1.85483 1.84618 1.74921 1.56199 1.16666 1.23727 0.92776 0.98211 1.04686 1.23657 0.87449 0.91833 1.00210 1.89053 1.15849 1.60388 1.64939 1.22702 0.89296 0.87403 0.96132 0.91221 1.22173 0.95675 1.03326 1.00630 0.91314 0.93004 0.93963 0.93741 0.92651 0.93475 0.72435 0.87357 0.89620 0.86512 0.91561 0.91390 0.90691 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 8.20 71.98 0.59 -4.95 16 2 C -0.13 -6.21 5.02 30.59 0.15 -6.05 16 3 C 0.08 3.72 0.98 -11.54 -0.01 3.71 16 4 H 0.02 1.05 8.07 -2.39 -0.02 1.04 16 5 C -0.51 -26.85 6.59 25.60 0.17 -26.68 16 6 H 0.06 3.14 4.41 -2.91 -0.01 3.13 16 7 C 0.01 0.77 5.29 84.65 0.45 1.22 16 8 N -0.92 -52.95 11.73 21.45 0.25 -52.70 16 9 Si 0.93 44.40 29.54 68.60 2.03 46.43 16 10 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C -0.07 -2.70 0.39 -51.91 -0.02 -2.72 16 14 C 0.50 19.04 4.63 71.24 0.33 19.37 16 15 O -0.52 -23.59 13.28 21.96 0.29 -23.29 16 16 O -0.51 -15.03 11.49 -51.35 -0.59 -15.62 16 17 C -0.16 -4.80 4.36 31.72 0.14 -4.67 16 18 C 0.04 1.22 7.64 72.60 0.55 1.78 16 19 O -0.38 -12.85 11.35 -148.98 -1.69 -14.54 16 20 C 0.10 3.81 2.81 31.10 0.09 3.90 16 21 H 0.07 2.82 7.82 -2.39 -0.02 2.80 16 22 C -0.16 -5.74 8.65 71.98 0.62 -5.11 16 23 H 0.07 2.19 5.29 -2.39 -0.01 2.17 16 24 H 0.05 1.85 7.24 -2.39 -0.02 1.83 16 25 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.04 2.43 6.41 -2.39 -0.02 2.42 16 27 H 0.06 2.75 5.05 -2.39 -0.01 2.74 16 28 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.42 8.31 9.10 -74.06 -0.67 7.64 16 30 H 0.11 3.27 4.38 -2.39 -0.01 3.26 16 31 H 0.09 2.37 7.35 -2.39 -0.02 2.36 16 32 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.71 5.39 -2.39 -0.01 2.69 16 35 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.07 2.41 5.45 -2.39 -0.01 2.40 16 Total: -1.00 -64.94 270.10 3.79 -61.15 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.44 Total: 18.79 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 3.06 Total: -20.21 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.25 Total: -52.70 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -1.99 Total: -53.46 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -64.94 3.79 -61.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821974100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.782 kcal (2) G-P(sol) polarization free energy of solvation -64.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds