Wall clock time and date at job start Mon Mar 30 2020 04:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99678 * 2 1 4 4 H 1.48500 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47120 * 300.00184 * 3 2 1 6 6 H 1.48504 * 109.46901 * 60.00037 * 3 2 1 7 7 C 1.37875 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99220 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00515 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47251 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47081 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47081 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.54489 * 59.82014 * 12 11 10 14 14 O 1.20824 * 120.00067 * 0.17902 * 13 12 11 15 15 O 1.34231 * 120.00248 * 180.17884 * 13 12 11 16 16 C 1.53207 * 109.61281 * 299.60058 * 12 11 10 17 17 C 1.53092 * 109.14859 * 183.11392 * 16 12 11 18 18 O 1.42905 * 109.42428 * 57.60656 * 17 16 12 19 19 C 1.42898 * 114.09851 * 298.83405 * 18 17 16 20 20 C 1.53097 * 109.41490 * 61.15689 * 19 18 17 21 21 H 0.96999 * 120.00385 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46743 * 59.99288 * 9 7 2 23 23 H 1.09008 * 109.46940 * 300.00170 * 9 7 2 24 24 H 1.08992 * 109.47183 * 60.00079 * 10 9 7 25 25 H 1.08998 * 109.47096 * 299.99758 * 10 9 7 26 26 H 1.09002 * 109.47499 * 59.99362 * 11 10 9 27 27 H 1.09008 * 109.46819 * 299.99875 * 11 10 9 28 28 H 0.96697 * 117.00143 * 180.02562 * 15 13 12 29 29 H 1.08999 * 109.53319 * 63.20911 * 16 12 11 30 30 H 1.08992 * 109.51748 * 303.01127 * 16 12 11 31 31 H 1.09002 * 109.48343 * 297.61643 * 17 16 12 32 32 H 1.08999 * 109.47546 * 177.59237 * 17 16 12 33 33 H 1.08995 * 109.48500 * 181.13987 * 19 18 17 34 34 H 1.09000 * 109.47974 * 301.16817 * 19 18 17 35 35 H 1.09003 * 109.51867 * 62.29966 * 20 19 18 36 36 H 1.08997 * 109.52106 * 182.48365 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 6 3.3441 -6.0692 1.2301 14 8 3.1831 -5.1749 2.0264 15 8 4.2972 -6.9909 1.4395 16 6 3.3517 -6.0774 -1.2524 17 6 4.2889 -7.2876 -1.2804 18 8 3.5154 -8.4887 -1.2480 19 6 2.7114 -8.6334 -0.0755 20 6 1.7106 -7.4775 0.0012 21 1 -0.4851 0.8400 0.0004 22 1 0.6247 -2.5570 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8713 -3.6038 0.8922 25 1 2.8727 -3.6046 -0.8877 26 1 0.8547 -5.0450 -0.8894 27 1 0.8528 -5.0447 0.8906 28 1 4.8294 -6.8977 2.2415 29 1 3.9409 -5.1607 -1.2326 30 1 2.7191 -6.0859 -2.1399 31 1 4.9487 -7.2566 -0.4133 32 1 4.8856 -7.2640 -2.1923 33 1 2.1716 -9.5793 -0.1193 34 1 3.3506 -8.6202 0.8074 35 1 1.0449 -7.5143 -0.8612 36 1 1.1262 -7.5618 0.9174 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821977747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:53 Heat of formation + Delta-G solvation = -157.978007 kcal Electronic energy + Delta-G solvation = -18353.283527 eV Core-core repulsion = 15415.774504 eV Total energy + Delta-G solvation = -2937.509023 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.12320 -38.55156 -36.54195 -35.22252 -33.34547 -31.44570 -31.02763 -27.61539 -25.17828 -23.87053 -23.38280 -22.02211 -20.01352 -19.56448 -18.02365 -16.36823 -16.25824 -16.22207 -15.66187 -15.37717 -14.76454 -14.40990 -14.06846 -13.73818 -13.20639 -12.78903 -12.43204 -12.26249 -12.04867 -11.90025 -11.70972 -11.33250 -11.08522 -10.89238 -10.77100 -10.57482 -10.36497 -10.19875 -10.02552 -9.53385 -9.35751 -9.13385 -8.91195 -8.27508 -5.93679 -3.94976 2.33085 3.05386 3.34426 3.41440 3.46148 3.88951 4.49894 4.59549 4.65125 4.75781 4.93974 5.26176 5.28672 5.42055 5.45692 5.53341 5.63682 5.69882 5.77020 5.87870 5.98740 6.05689 6.17263 6.28873 6.46391 6.51182 6.84923 7.04010 7.18161 7.30406 7.76277 7.93218 8.01958 8.09465 8.51938 9.12358 9.68410 11.17938 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040570 B = 0.005317 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.993332 B = 5264.592891 C = 5338.514703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.124 4.124 11 C -0.099 4.099 12 C -0.046 4.046 13 C 0.478 3.522 14 O -0.487 6.487 15 O -0.516 6.516 16 C -0.146 4.146 17 C 0.051 3.949 18 O -0.382 6.382 19 C 0.052 3.948 20 C -0.145 4.145 21 H 0.259 0.741 22 H 0.012 0.988 23 H 0.015 0.985 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.398 0.602 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.952 -17.846 -0.252 19.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.137 4.137 12 C -0.048 4.048 13 C 0.320 3.680 14 O -0.372 6.372 15 O -0.330 6.330 16 C -0.183 4.183 17 C -0.026 4.026 18 O -0.301 6.301 19 C -0.025 4.025 20 C -0.183 4.183 21 H 0.068 0.932 22 H 0.031 0.969 23 H 0.033 0.967 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.257 0.743 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.520 -17.641 -0.527 18.814 hybrid contribution 0.633 1.385 0.775 1.709 sum 7.154 -16.256 0.248 17.762 Atomic orbital electron populations 1.69978 1.06026 1.26319 1.51397 1.25024 0.94835 0.99179 0.95528 0.86566 0.80134 0.83966 0.77523 1.19806 1.21058 1.21039 1.21307 0.93001 0.91189 1.49817 0.92839 1.19053 0.93977 0.91402 0.96903 1.21928 0.99631 0.93355 1.01171 1.21663 0.96388 0.93140 1.02475 1.20794 0.94907 0.98613 0.90441 1.23597 0.78494 0.78377 0.87571 1.90750 1.67594 1.33094 1.45775 1.84750 1.46940 1.53083 1.48197 1.22324 0.99169 1.00012 0.96844 1.22865 0.93131 0.83698 1.02879 1.87875 1.59760 1.40658 1.41795 1.22808 0.92706 0.97593 0.89373 1.22290 0.98771 0.93237 1.04023 0.93171 0.96930 0.96705 0.91113 0.93777 0.90980 0.91499 0.74288 0.89568 0.89373 0.91008 0.89062 0.89200 0.91059 0.89387 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.33 29.54 -169.99 -5.02 17.30 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.51 -15.22 9.11 -34.44 -0.31 -15.53 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.64 4.97 -27.89 -0.14 0.50 16 10 C -0.12 -2.67 4.49 -26.73 -0.12 -2.79 16 11 C -0.10 -1.71 3.92 -26.73 -0.10 -1.82 16 12 C -0.05 -0.64 0.53 -155.47 -0.08 -0.72 16 13 C 0.48 6.86 6.57 36.00 0.24 7.10 16 14 O -0.49 -8.99 14.43 -18.75 -0.27 -9.26 16 15 O -0.52 -5.32 7.81 -39.26 -0.31 -5.63 16 16 C -0.15 -1.86 4.48 -26.58 -0.12 -1.98 16 17 C 0.05 0.57 6.55 37.20 0.24 0.81 16 18 O -0.38 -4.66 10.77 -35.23 -0.38 -5.04 16 19 C 0.05 0.54 6.55 37.21 0.24 0.78 16 20 C -0.15 -1.65 4.91 -26.59 -0.13 -1.78 16 21 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 22 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.01 0.42 8.14 -51.92 -0.42 0.00 16 24 H 0.07 1.63 5.52 -51.93 -0.29 1.35 16 25 H 0.04 0.91 6.52 -51.93 -0.34 0.57 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.07 1.21 8.11 -51.92 -0.42 0.79 16 28 H 0.40 2.58 9.10 45.56 0.41 2.99 16 29 H 0.09 1.17 6.63 -51.93 -0.34 0.82 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.78 5.51 -51.93 -0.29 0.50 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.73 5.53 -51.93 -0.29 0.44 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 282.79 15.07 4.26 4.26 Total: -1.00 -34.15 282.79 -5.83 -39.98 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -4.47 Total: -0.67 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -0.38 Total: -13.90 kcal Atomic # 7 Polarization: -27.79 SS G_CDS: 0.74 Total: -27.06 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.96 Total: -19.93 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.15 -5.83 -39.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821977747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.996 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds