Wall clock time and date at job start Mon Mar 30 2020 04:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99678 * 2 1 4 4 H 1.48500 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47120 * 300.00184 * 3 2 1 6 6 H 1.48504 * 109.46901 * 60.00037 * 3 2 1 7 7 C 1.37875 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99220 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00515 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47251 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47081 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47081 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.54489 * 59.82014 * 12 11 10 14 14 O 1.20824 * 120.00067 * 0.17902 * 13 12 11 15 15 O 1.34231 * 120.00248 * 180.17884 * 13 12 11 16 16 C 1.53207 * 109.61281 * 299.60058 * 12 11 10 17 17 C 1.53092 * 109.14859 * 183.11392 * 16 12 11 18 18 O 1.42905 * 109.42428 * 57.60656 * 17 16 12 19 19 C 1.42898 * 114.09851 * 298.83405 * 18 17 16 20 20 C 1.53097 * 109.41490 * 61.15689 * 19 18 17 21 21 H 0.96999 * 120.00385 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46743 * 59.99288 * 9 7 2 23 23 H 1.09008 * 109.46940 * 300.00170 * 9 7 2 24 24 H 1.08992 * 109.47183 * 60.00079 * 10 9 7 25 25 H 1.08998 * 109.47096 * 299.99758 * 10 9 7 26 26 H 1.09002 * 109.47499 * 59.99362 * 11 10 9 27 27 H 1.09008 * 109.46819 * 299.99875 * 11 10 9 28 28 H 0.96697 * 117.00143 * 180.02562 * 15 13 12 29 29 H 1.08999 * 109.53319 * 63.20911 * 16 12 11 30 30 H 1.08992 * 109.51748 * 303.01127 * 16 12 11 31 31 H 1.09002 * 109.48343 * 297.61643 * 17 16 12 32 32 H 1.08999 * 109.47546 * 177.59237 * 17 16 12 33 33 H 1.08995 * 109.48500 * 181.13987 * 19 18 17 34 34 H 1.09000 * 109.47974 * 301.16817 * 19 18 17 35 35 H 1.09003 * 109.51867 * 62.29966 * 20 19 18 36 36 H 1.08997 * 109.52106 * 182.48365 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 6 3.3441 -6.0692 1.2301 14 8 3.1831 -5.1749 2.0264 15 8 4.2972 -6.9909 1.4395 16 6 3.3517 -6.0774 -1.2524 17 6 4.2889 -7.2876 -1.2804 18 8 3.5154 -8.4887 -1.2480 19 6 2.7114 -8.6334 -0.0755 20 6 1.7106 -7.4775 0.0012 21 1 -0.4851 0.8400 0.0004 22 1 0.6247 -2.5570 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8713 -3.6038 0.8922 25 1 2.8727 -3.6046 -0.8877 26 1 0.8547 -5.0450 -0.8894 27 1 0.8528 -5.0447 0.8906 28 1 4.8294 -6.8977 2.2415 29 1 3.9409 -5.1607 -1.2326 30 1 2.7191 -6.0859 -2.1399 31 1 4.9487 -7.2566 -0.4133 32 1 4.8856 -7.2640 -2.1923 33 1 2.1716 -9.5793 -0.1193 34 1 3.3506 -8.6202 0.8074 35 1 1.0449 -7.5143 -0.8612 36 1 1.1262 -7.5618 0.9174 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821977747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:53 Heat of formation + Delta-G solvation = -181.647073 kcal Electronic energy + Delta-G solvation = -18354.309895 eV Core-core repulsion = 15415.774504 eV Total energy + Delta-G solvation = -2938.535390 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.21568 -39.55122 -37.69236 -36.51603 -35.27228 -33.11764 -32.08452 -29.27462 -26.67911 -25.06366 -24.62761 -23.34639 -21.74734 -20.65695 -19.08941 -18.47742 -17.36789 -17.21005 -16.79942 -16.49550 -16.43983 -15.70833 -15.41787 -14.93898 -14.49733 -14.41943 -13.86712 -13.55591 -13.32943 -13.23112 -13.00954 -12.92646 -12.66588 -12.56914 -12.40590 -12.05508 -11.72820 -11.49992 -11.34337 -11.21086 -10.97304 -10.89430 -10.54329 -10.34171 -8.21714 -6.32885 1.20029 1.36673 1.37804 1.51180 2.05304 2.39154 3.05876 3.10746 3.50877 3.57769 3.72608 4.03749 4.28700 4.35388 4.42506 4.51569 4.53576 4.64505 4.70846 4.83178 4.87438 4.93257 5.05642 5.08970 5.13123 5.21186 5.30797 5.37780 5.48961 5.64760 5.78961 5.90511 6.25491 6.33458 6.83759 7.02097 7.36055 8.90568 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040570 B = 0.005317 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.993332 B = 5264.592891 C = 5338.514703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.027 3.973 10 C -0.109 4.109 11 C -0.093 4.093 12 C -0.046 4.046 13 C 0.487 3.513 14 O -0.536 6.536 15 O -0.498 6.498 16 C -0.145 4.145 17 C 0.054 3.946 18 O -0.392 6.392 19 C 0.052 3.948 20 C -0.142 4.142 21 H 0.264 0.736 22 H -0.006 1.006 23 H -0.018 1.018 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.419 0.581 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 -18.827 -0.719 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.146 4.146 11 C -0.130 4.130 12 C -0.048 4.048 13 C 0.331 3.669 14 O -0.425 6.425 15 O -0.313 6.313 16 C -0.183 4.183 17 C -0.022 4.022 18 O -0.311 6.311 19 C -0.024 4.024 20 C -0.179 4.179 21 H 0.073 0.927 22 H 0.012 0.988 23 H 0.001 0.999 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.281 0.719 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.929 -18.663 -0.994 20.302 hybrid contribution 0.195 1.645 0.943 1.906 sum 8.124 -17.018 -0.051 18.858 Atomic orbital electron populations 1.70105 1.07792 1.27717 1.51835 1.26007 0.95830 1.03411 0.94691 0.85387 0.78955 0.78652 0.77983 1.18781 1.19859 1.20312 1.21718 0.93321 0.92647 1.50367 0.92740 1.18971 0.94397 0.93314 0.94325 1.21693 0.98456 0.93627 1.00847 1.21498 0.96821 0.92505 1.02212 1.20714 0.94622 0.98374 0.91041 1.23616 0.78567 0.77863 0.86896 1.90746 1.69131 1.35206 1.47448 1.84683 1.45980 1.51253 1.49340 1.22329 0.99259 1.00478 0.96204 1.22891 0.92674 0.82629 1.03981 1.87874 1.59979 1.40722 1.42550 1.22927 0.92461 0.97961 0.89064 1.22303 0.98950 0.91948 1.04727 0.92724 0.98805 0.99938 0.92504 0.92895 0.90188 0.92854 0.71924 0.90724 0.89017 0.90618 0.87417 0.86976 0.90657 0.88733 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.94 13.29 21.45 0.28 -58.66 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 45.98 29.54 68.60 2.03 48.00 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.54 -32.80 9.11 25.60 0.23 -32.57 16 8 H 0.05 3.20 7.74 -2.91 -0.02 3.17 16 9 C 0.03 1.52 4.97 29.85 0.15 1.67 16 10 C -0.11 -4.83 4.49 30.59 0.14 -4.69 16 11 C -0.09 -3.25 3.92 30.59 0.12 -3.13 16 12 C -0.05 -1.23 0.53 -52.80 -0.03 -1.26 16 13 C 0.49 13.50 6.57 71.23 0.47 13.97 16 14 O -0.54 -19.96 14.43 21.97 0.32 -19.64 16 15 O -0.50 -9.11 7.81 -51.43 -0.40 -9.51 16 16 C -0.15 -3.47 4.48 30.69 0.14 -3.33 16 17 C 0.05 1.08 6.55 72.01 0.47 1.55 16 18 O -0.39 -8.38 10.77 -148.98 -1.60 -9.98 16 19 C 0.05 0.93 6.55 72.01 0.47 1.40 16 20 C -0.14 -2.92 4.91 30.69 0.15 -2.77 16 21 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 22 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 23 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 24 H 0.06 2.70 5.52 -2.39 -0.01 2.69 16 25 H 0.05 2.21 6.52 -2.39 -0.02 2.20 16 26 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.05 1.99 8.11 -2.38 -0.02 1.97 16 28 H 0.42 4.38 9.10 -74.06 -0.67 3.71 16 29 H 0.07 1.95 6.63 -2.39 -0.02 1.93 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 31 H 0.08 1.44 5.51 -2.39 -0.01 1.43 16 32 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.29 5.53 -2.39 -0.01 1.27 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -74.62 282.79 3.80 -70.82 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.41 Total: 7.79 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 2.77 Total: -28.81 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.28 Total: -58.66 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.69 Total: -39.14 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -74.62 3.80 -70.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821977747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.830 kcal (2) G-P(sol) polarization free energy of solvation -74.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds