Wall clock time and date at job start Mon Mar 30 2020 03:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.34777 * 119.99665 * 180.27868 * 3 2 1 5 5 S 1.71198 * 120.00158 * 359.72214 * 4 3 2 6 6 N 1.34775 * 119.99585 * 179.72218 * 4 3 2 7 7 C 1.46507 * 119.99876 * 179.97438 * 6 4 3 8 8 H 1.08996 * 110.01599 * 326.39286 * 7 6 4 9 9 C 1.54262 * 110.02989 * 87.83856 * 7 6 4 10 10 C 1.54886 * 104.20059 * 95.67377 * 9 7 6 11 11 C 1.54893 * 102.74515 * 37.93964 * 10 9 7 12 12 H 1.09009 * 110.48200 * 80.73886 * 11 10 9 13 13 C 1.50702 * 110.48679 * 203.37790 * 11 10 9 14 14 H 1.08000 * 119.99752 * 114.77585 * 13 11 10 15 15 C 1.37870 * 120.00103 * 294.78024 * 13 11 10 16 16 N 1.31520 * 120.00247 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 120.00035 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46892 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47048 * 120.00036 * 17 15 13 20 20 H 1.48500 * 109.46822 * 239.99778 * 17 15 13 21 21 C 1.53872 * 110.03132 * 205.00098 * 7 6 4 22 22 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46638 * 300.00121 * 1 2 3 24 24 H 1.09006 * 109.47139 * 60.00254 * 1 2 3 25 25 H 1.09009 * 109.46730 * 239.99787 * 2 1 3 26 26 H 1.08998 * 109.46846 * 120.00332 * 2 1 3 27 27 H 0.97001 * 119.99790 * 359.97438 * 3 2 1 28 28 H 0.97000 * 120.00523 * 0.02562 * 6 4 3 29 29 H 1.09001 * 110.48726 * 214.35797 * 9 7 6 30 30 H 1.09008 * 110.48654 * 336.99432 * 9 7 6 31 31 H 1.09002 * 110.75507 * 279.62877 * 10 9 7 32 32 H 1.08997 * 110.91735 * 156.33227 * 10 9 7 33 33 H 0.96999 * 119.99932 * 179.97438 * 16 15 13 34 34 H 1.08994 * 110.03407 * 0.02562 * 21 7 6 35 35 H 1.09006 * 110.03030 * 121.43364 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0057 5 16 4.4559 0.3261 -0.0057 6 7 3.7927 2.8980 -0.0113 7 6 5.2331 3.1657 -0.0169 8 1 5.7576 2.3972 0.5507 9 6 5.7578 3.2038 -1.4671 10 6 5.7510 4.7084 -1.8343 11 6 6.1995 5.3843 -0.5147 12 1 7.2836 5.3362 -0.4108 13 6 5.7268 6.8144 -0.4674 14 1 5.0040 7.1199 0.2747 15 6 6.2169 7.7328 -1.3714 16 7 7.0974 7.3609 -2.2748 17 14 5.6315 9.5057 -1.3122 18 1 4.6478 9.6657 -0.2113 19 1 6.7912 10.4023 -1.0747 20 1 4.9896 9.8584 -2.6041 21 6 5.5139 4.5522 0.5885 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.3880 2.1185 -0.0004 28 1 3.1624 3.6354 -0.0109 29 1 6.7704 2.8034 -1.5170 30 1 5.0935 2.6468 -2.1279 31 1 4.7486 5.0334 -2.1134 32 1 6.4600 4.9167 -2.6355 33 1 7.4420 8.0069 -2.9110 34 1 4.5786 5.0257 0.8870 35 1 6.1755 4.4565 1.4496 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840790032.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:27 Heat of formation + Delta-G solvation = -6.030474 kcal Electronic energy + Delta-G solvation = -15434.098045 eV Core-core repulsion = 12978.223584 eV Total energy + Delta-G solvation = -2455.874461 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.21890 -37.34616 -34.53958 -32.33260 -30.56387 -28.22928 -27.09669 -24.03256 -23.55160 -23.14572 -19.88353 -19.43656 -18.02378 -17.04895 -16.27545 -15.57159 -15.07719 -14.86014 -14.65925 -14.20543 -13.35490 -12.97048 -12.69070 -12.42722 -12.17324 -11.82901 -11.65924 -11.08416 -10.96614 -10.87326 -10.66764 -10.54577 -10.39212 -10.01676 -9.64148 -9.31277 -8.88654 -8.83266 -8.42128 -7.60735 -7.14206 -6.07073 -4.10902 1.65398 2.20107 2.79892 3.23857 3.32756 3.34670 3.73147 4.37565 4.67048 4.83318 5.04780 5.24243 5.41175 5.55212 5.57767 5.66450 5.71184 5.77760 6.03835 6.28444 6.37813 6.43239 6.60966 6.67761 6.78236 6.87091 6.99166 7.21355 7.31527 7.51568 7.65093 7.79605 7.96133 8.35597 8.91820 9.53621 11.02243 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.037292 B = 0.005201 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.642655 B = 5382.624776 C = 5805.977688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.123 3.877 3 N -0.696 5.696 4 C 0.563 3.437 5 S -0.664 6.664 6 N -0.662 5.662 7 C 0.137 3.863 8 H 0.106 0.894 9 C -0.126 4.126 10 C -0.103 4.103 11 C 0.048 3.952 12 H 0.036 0.964 13 C -0.517 4.517 14 H 0.054 0.946 15 C 0.064 3.936 16 N -0.886 5.886 17 Si 0.888 3.112 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.123 4.123 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.395 0.605 28 H 0.397 0.603 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.230 -9.269 3.597 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.001 4.001 3 N -0.328 5.328 4 C 0.201 3.799 5 S -0.540 6.540 6 N -0.289 5.289 7 C 0.033 3.967 8 H 0.124 0.876 9 C -0.165 4.165 10 C -0.141 4.141 11 C 0.029 3.971 12 H 0.054 0.946 13 C -0.555 4.555 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.524 5.524 17 Si 0.716 3.284 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.162 4.162 22 H 0.098 0.902 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.231 0.769 28 H 0.233 0.767 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.291 -10.136 3.462 15.563 hybrid contribution -1.521 2.427 -0.112 2.866 sum -12.812 -7.709 3.349 15.323 Atomic orbital electron populations 1.22063 0.94459 1.03569 1.02423 1.21587 0.93418 0.80522 1.04581 1.45029 1.03690 1.10419 1.73654 1.22222 0.87110 0.90311 0.80223 1.93317 1.51664 1.33571 1.75407 1.45611 1.10922 1.03717 1.68636 1.22374 0.75850 0.99235 0.99201 0.87628 1.22748 1.00518 0.99329 0.93937 1.22503 1.00302 0.90332 1.00935 1.19483 0.95881 0.92950 0.88752 0.94574 1.21179 1.25039 0.93625 1.15643 0.92766 1.24977 0.94886 0.98501 0.95474 1.69967 1.29750 1.34413 1.18282 0.86607 0.78651 0.85361 0.77775 1.19914 1.20971 1.21109 1.22659 1.00896 0.92565 1.00046 0.90211 0.92073 0.92033 0.89817 0.89833 0.76930 0.76669 0.91136 0.92938 0.93848 0.91245 0.93038 0.92306 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.03 37.16 0.37 -0.62 16 2 C 0.12 1.14 5.85 -4.04 -0.02 1.12 16 3 N -0.70 -7.30 5.56 -62.03 -0.34 -7.65 16 4 C 0.56 8.24 7.98 -86.92 -0.69 7.55 16 5 S -0.66 -12.44 27.25 -107.50 -2.93 -15.36 16 6 N -0.66 -9.64 5.03 -54.43 -0.27 -9.92 16 7 C 0.14 2.38 2.97 -66.81 -0.20 2.18 16 8 H 0.11 1.95 6.79 -51.93 -0.35 1.60 16 9 C -0.13 -2.41 6.54 -25.08 -0.16 -2.57 16 10 C -0.10 -2.27 5.75 -24.74 -0.14 -2.41 16 11 C 0.05 1.12 2.72 -90.11 -0.25 0.88 16 12 H 0.04 0.93 8.14 -51.92 -0.42 0.51 16 13 C -0.52 -13.43 8.46 -34.44 -0.29 -13.72 16 14 H 0.05 1.38 7.54 -52.49 -0.40 0.99 16 15 C 0.06 1.71 5.35 -17.82 -0.10 1.61 16 16 N -0.89 -24.79 12.29 55.43 0.68 -24.11 16 17 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.12 -2.34 6.13 -25.62 -0.16 -2.49 16 22 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.89 7.99 -51.92 -0.41 0.48 16 26 H 0.08 0.87 8.00 -51.93 -0.42 0.45 16 27 H 0.39 3.05 8.49 -40.82 -0.35 2.71 16 28 H 0.40 4.97 8.33 -40.82 -0.34 4.63 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.05 0.99 8.04 -51.92 -0.42 0.58 16 31 H 0.04 0.97 8.05 -51.93 -0.42 0.56 16 32 H 0.07 1.71 7.55 -51.93 -0.39 1.32 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.06 1.07 7.13 -51.93 -0.37 0.70 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 297.83 15.07 4.49 4.49 Total: -1.00 -30.60 297.83 -10.57 -41.17 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.53 Total: 4.30 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -1.64 Total: -8.48 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.06 Total: -41.67 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: -12.44 SS G_CDS: -2.93 Total: -15.36 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.60 -10.57 -41.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840790032.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.142 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds