Wall clock time and date at job start Mon Mar 30 2020 03:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.34777 * 119.99665 * 180.27868 * 3 2 1 5 5 S 1.71198 * 120.00158 * 359.72214 * 4 3 2 6 6 N 1.34775 * 119.99585 * 179.72218 * 4 3 2 7 7 C 1.46507 * 119.99876 * 179.97438 * 6 4 3 8 8 H 1.08996 * 110.01599 * 326.39286 * 7 6 4 9 9 C 1.54262 * 110.02989 * 87.83856 * 7 6 4 10 10 C 1.54886 * 104.20059 * 95.67377 * 9 7 6 11 11 C 1.54893 * 102.74515 * 37.93964 * 10 9 7 12 12 H 1.09009 * 110.48200 * 80.73886 * 11 10 9 13 13 C 1.50702 * 110.48679 * 203.37790 * 11 10 9 14 14 H 1.08000 * 119.99752 * 114.77585 * 13 11 10 15 15 C 1.37870 * 120.00103 * 294.78024 * 13 11 10 16 16 N 1.31520 * 120.00247 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 120.00035 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46892 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47048 * 120.00036 * 17 15 13 20 20 H 1.48500 * 109.46822 * 239.99778 * 17 15 13 21 21 C 1.53872 * 110.03132 * 205.00098 * 7 6 4 22 22 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46638 * 300.00121 * 1 2 3 24 24 H 1.09006 * 109.47139 * 60.00254 * 1 2 3 25 25 H 1.09009 * 109.46730 * 239.99787 * 2 1 3 26 26 H 1.08998 * 109.46846 * 120.00332 * 2 1 3 27 27 H 0.97001 * 119.99790 * 359.97438 * 3 2 1 28 28 H 0.97000 * 120.00523 * 0.02562 * 6 4 3 29 29 H 1.09001 * 110.48726 * 214.35797 * 9 7 6 30 30 H 1.09008 * 110.48654 * 336.99432 * 9 7 6 31 31 H 1.09002 * 110.75507 * 279.62877 * 10 9 7 32 32 H 1.08997 * 110.91735 * 156.33227 * 10 9 7 33 33 H 0.96999 * 119.99932 * 179.97438 * 16 15 13 34 34 H 1.08994 * 110.03407 * 0.02562 * 21 7 6 35 35 H 1.09006 * 110.03030 * 121.43364 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0057 5 16 4.4559 0.3261 -0.0057 6 7 3.7927 2.8980 -0.0113 7 6 5.2331 3.1657 -0.0169 8 1 5.7576 2.3972 0.5507 9 6 5.7578 3.2038 -1.4671 10 6 5.7510 4.7084 -1.8343 11 6 6.1995 5.3843 -0.5147 12 1 7.2836 5.3362 -0.4108 13 6 5.7268 6.8144 -0.4674 14 1 5.0040 7.1199 0.2747 15 6 6.2169 7.7328 -1.3714 16 7 7.0974 7.3609 -2.2748 17 14 5.6315 9.5057 -1.3122 18 1 4.6478 9.6657 -0.2113 19 1 6.7912 10.4023 -1.0747 20 1 4.9896 9.8584 -2.6041 21 6 5.5139 4.5522 0.5885 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.3880 2.1185 -0.0004 28 1 3.1624 3.6354 -0.0109 29 1 6.7704 2.8034 -1.5170 30 1 5.0935 2.6468 -2.1279 31 1 4.7486 5.0334 -2.1134 32 1 6.4600 4.9167 -2.6355 33 1 7.4420 8.0069 -2.9110 34 1 4.5786 5.0257 0.8870 35 1 6.1755 4.4565 1.4496 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840790032.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:27 Heat of formation + Delta-G solvation = -24.653579 kcal Electronic energy + Delta-G solvation = -15434.905603 eV Core-core repulsion = 12978.223584 eV Total energy + Delta-G solvation = -2456.682020 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.52680 -38.66308 -35.91654 -34.13037 -31.53216 -29.96822 -28.66904 -25.84866 -24.76621 -23.97910 -21.35932 -21.18035 -19.25023 -18.66442 -17.82275 -16.73625 -16.48157 -16.15096 -16.13558 -15.68644 -14.72731 -14.51334 -13.96834 -13.59337 -13.29922 -12.96997 -12.78479 -12.76176 -12.67417 -12.35575 -12.22591 -12.12309 -11.89321 -11.61650 -11.45956 -11.11572 -10.81197 -10.45624 -9.98273 -9.02227 -8.60612 -8.10248 -6.20238 0.43820 0.95078 1.41186 1.44254 1.53833 1.62138 2.44252 2.66915 3.21278 3.87471 3.97504 4.04812 4.21300 4.22943 4.50754 4.68036 4.70629 4.84161 4.86525 5.00898 5.03811 5.05880 5.12612 5.16733 5.21072 5.37170 5.43423 5.65209 5.70295 5.88610 5.99659 6.01261 6.36917 6.46217 6.91606 7.47837 8.98704 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.037292 B = 0.005201 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.642655 B = 5382.624776 C = 5805.977688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.120 3.880 3 N -0.669 5.669 4 C 0.582 3.418 5 S -0.743 6.743 6 N -0.655 5.655 7 C 0.155 3.845 8 H 0.100 0.900 9 C -0.114 4.114 10 C -0.090 4.090 11 C 0.039 3.961 12 H 0.002 0.998 13 C -0.526 4.526 14 H 0.060 0.940 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.951 3.049 18 H -0.263 1.263 19 H -0.286 1.286 20 H -0.284 1.284 21 C -0.110 4.110 22 H 0.092 0.908 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.415 0.585 28 H 0.412 0.588 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.259 0.741 34 H 0.073 0.927 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.910 -8.915 4.462 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.004 4.004 3 N -0.300 5.300 4 C 0.216 3.784 5 S -0.619 6.619 6 N -0.283 5.283 7 C 0.050 3.950 8 H 0.118 0.882 9 C -0.153 4.153 10 C -0.129 4.129 11 C 0.020 3.980 12 H 0.020 0.980 13 C -0.564 4.564 14 H 0.078 0.922 15 C -0.187 4.187 16 N -0.560 5.560 17 Si 0.777 3.223 18 H -0.187 1.187 19 H -0.212 1.212 20 H -0.210 1.210 21 C -0.148 4.148 22 H 0.111 0.889 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.254 0.746 28 H 0.251 0.749 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.048 -9.778 4.341 17.658 hybrid contribution -0.744 2.309 -0.383 2.456 sum -14.792 -7.469 3.959 17.037 Atomic orbital electron populations 1.22015 0.91235 1.04802 1.03352 1.21729 0.95857 0.79306 1.03460 1.45079 1.02353 1.11951 1.70587 1.21712 0.87909 0.88946 0.79815 1.93528 1.53909 1.35861 1.78636 1.45246 1.10068 1.04171 1.68860 1.21932 0.77423 0.98145 0.97492 0.88205 1.22589 1.00571 0.96855 0.95239 1.22261 0.98882 0.92414 0.99319 1.19456 0.94269 0.93151 0.91142 0.97998 1.21573 1.24709 0.94872 1.15288 0.92187 1.25756 0.95132 1.02489 0.95328 1.70106 1.31116 1.35601 1.19144 0.85609 0.78164 0.80540 0.77938 1.18668 1.21192 1.21009 1.22455 1.01217 0.92475 0.98693 0.88899 0.90943 0.91204 0.91157 0.90814 0.74576 0.74889 0.91744 0.92550 0.94172 0.94523 0.93241 0.90873 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 10.03 71.98 0.72 -0.59 16 2 C 0.12 1.95 5.85 86.38 0.51 2.46 16 3 N -0.67 -12.07 5.56 -350.16 -1.95 -14.02 16 4 C 0.58 15.82 7.98 179.05 1.43 17.25 16 5 S -0.74 -27.56 27.25 -56.49 -1.54 -29.10 16 6 N -0.65 -17.49 5.03 -326.13 -1.64 -19.14 16 7 C 0.15 5.19 2.97 45.71 0.14 5.33 16 8 H 0.10 3.60 6.79 -2.39 -0.02 3.59 16 9 C -0.11 -4.30 6.54 31.67 0.21 -4.09 16 10 C -0.09 -4.05 5.75 31.89 0.18 -3.87 16 11 C 0.04 1.81 2.72 -10.46 -0.03 1.79 16 12 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 13 C -0.53 -27.11 8.46 25.60 0.22 -26.90 16 14 H 0.06 2.96 7.54 -2.91 -0.02 2.94 16 15 C 0.01 0.63 5.35 84.65 0.45 1.08 16 16 N -0.92 -52.47 12.29 21.45 0.26 -52.21 16 17 Si 0.95 41.92 29.54 68.60 2.03 43.94 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 C -0.11 -4.02 6.13 31.32 0.19 -3.83 16 22 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 25 H 0.07 1.40 7.99 -2.38 -0.02 1.39 16 26 H 0.07 1.42 8.00 -2.39 -0.02 1.40 16 27 H 0.41 4.72 8.49 -92.71 -0.79 3.93 16 28 H 0.41 8.88 8.33 -92.71 -0.77 8.10 16 29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.06 2.09 8.04 -2.38 -0.02 2.07 16 31 H 0.04 1.79 8.05 -2.39 -0.02 1.77 16 32 H 0.04 1.85 7.55 -2.39 -0.02 1.84 16 33 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 34 H 0.07 2.46 7.13 -2.39 -0.02 2.44 16 35 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -67.15 297.83 0.70 -66.45 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -0.48 Total: 15.44 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 4.02 Total: -11.37 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -3.33 Total: -85.36 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -27.56 SS G_CDS: -1.54 Total: -29.10 kcal Total: -67.15 0.70 -66.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840790032.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.793 kcal (2) G-P(sol) polarization free energy of solvation -67.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds