Wall clock time and date at job start Mon Mar 30 2020 04:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47366 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99830 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00094 * 179.97438 * 12 11 10 15 15 C 1.45203 * 116.99897 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47265 * 180.02562 * 15 14 12 17 17 H 1.09002 * 110.80309 * 305.70134 * 16 15 14 18 18 C 1.54812 * 110.90906 * 182.07387 * 16 15 14 19 19 C 1.54097 * 104.18544 * 220.91895 * 18 16 15 20 20 O 1.43747 * 107.29588 * 357.96962 * 19 18 16 21 21 C 1.44422 * 106.99830 * 26.48966 * 20 19 18 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 25 25 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 26 26 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 27 27 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 28 28 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 29 29 H 1.09000 * 109.47076 * 300.00549 * 15 14 12 30 30 H 1.09003 * 109.47054 * 59.99988 * 15 14 12 31 31 H 1.08996 * 110.48528 * 339.59609 * 18 16 15 32 32 H 1.08998 * 110.48502 * 102.24262 * 18 16 15 33 33 H 1.08996 * 109.87651 * 117.39597 * 19 18 16 34 34 H 1.08995 * 109.87999 * 238.39408 * 19 18 16 35 35 H 1.08997 * 110.64577 * 201.48052 * 21 20 19 36 36 H 1.08997 * 110.60020 * 78.47148 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 6 2.4594 -6.1326 0.0048 13 8 3.6474 -5.9118 -0.0005 14 8 2.0120 -7.3981 0.0090 15 6 3.0120 -8.4509 0.0062 16 6 2.3174 -9.8141 0.0110 17 1 1.6154 -9.8879 0.8416 18 6 3.3545 -10.9624 0.0605 19 6 2.7974 -12.0168 -0.9154 20 8 1.5451 -11.5178 -1.4144 21 6 1.6052 -10.0767 -1.3403 22 1 -0.4850 0.8401 0.0004 23 1 0.6281 -2.5552 0.8979 24 1 0.6206 -2.5586 -0.8820 25 1 2.8678 -3.6059 -0.8902 26 1 2.8760 -3.6028 0.8897 27 1 0.8573 -5.0435 0.9006 28 1 0.8498 -5.0461 -0.8793 29 1 3.6308 -8.3619 -0.8867 30 1 3.6389 -8.3589 0.8932 31 1 4.3300 -10.6101 -0.2746 32 1 3.4215 -11.3727 1.0681 33 1 3.4939 -12.1623 -1.7410 34 1 2.6409 -12.9601 -0.3921 35 1 0.6022 -9.6500 -1.3348 36 1 2.1902 -9.6742 -2.1672 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847630654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:35 Heat of formation + Delta-G solvation = -159.647884 kcal Electronic energy + Delta-G solvation = -16833.944813 eV Core-core repulsion = 13896.363379 eV Total energy + Delta-G solvation = -2937.581434 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.45235 -39.52531 -36.57506 -34.32270 -33.32521 -32.11150 -29.97740 -28.27210 -26.19366 -24.04624 -22.88796 -21.11595 -20.96172 -19.81288 -17.55414 -16.98711 -16.67067 -16.39284 -16.14882 -15.42338 -15.22552 -14.51036 -14.41297 -13.87420 -13.36011 -13.01676 -12.51456 -12.31167 -12.18914 -11.90551 -11.79672 -11.48992 -11.30832 -11.09711 -10.82429 -10.70494 -10.60753 -10.57941 -10.22927 -10.01411 -9.75182 -9.41091 -9.11815 -8.35073 -6.00675 -4.02752 2.45302 2.71283 3.34641 3.38443 3.41815 3.60750 4.11875 4.33580 4.46195 4.49737 4.67973 4.84100 4.90221 5.08584 5.18795 5.27274 5.33099 5.35349 5.41780 5.49334 5.58532 5.59742 5.65318 5.77897 6.08188 6.49709 6.53794 6.59875 6.79963 7.05494 7.65254 7.77056 7.97576 7.99153 8.41590 9.03796 9.61354 11.10753 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.073539 B = 0.003213 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.658374 B = 8712.491443 C = 8942.477108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.112 4.112 12 C 0.461 3.539 13 O -0.509 6.509 14 O -0.362 6.362 15 C 0.075 3.925 16 C -0.122 4.122 17 H 0.099 0.901 18 C -0.150 4.150 19 C 0.047 3.953 20 O -0.379 6.379 21 C 0.053 3.947 22 H 0.261 0.739 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.963 -22.027 -0.294 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.149 4.149 12 C 0.304 3.696 13 O -0.396 6.396 14 O -0.280 6.280 15 C 0.000 4.000 16 C -0.141 4.141 17 H 0.117 0.883 18 C -0.188 4.188 19 C -0.030 4.030 20 O -0.298 6.298 21 C -0.023 4.023 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.014 -22.002 -0.376 22.368 hybrid contribution 0.838 1.014 0.131 1.322 sum 4.852 -20.987 -0.245 21.542 Atomic orbital electron populations 1.69951 1.06042 1.26767 1.50824 1.25020 0.94868 0.99278 0.95278 0.86635 0.79563 0.82998 0.78680 1.20209 1.21284 1.20224 1.21202 0.93141 0.90937 1.50677 0.92596 1.19120 0.93876 0.91135 0.97446 1.21583 0.98968 0.91262 1.01957 1.21703 0.97317 0.90588 1.05317 1.24445 0.90177 0.83296 0.71642 1.90645 1.18570 1.85107 1.45231 1.86538 1.40745 1.16128 1.84585 1.22902 0.89963 0.84222 1.02864 1.22767 0.98302 0.92576 1.00449 0.88285 1.22936 0.99254 0.95223 1.01349 1.23140 0.86198 0.97445 0.96181 1.88893 1.35502 1.19972 1.85412 1.23661 1.02256 0.81090 0.95318 0.92917 0.96360 0.96326 0.92442 0.92454 0.88039 0.88033 0.91065 0.90881 0.90132 0.89796 0.92242 0.89695 0.88029 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.09 4.44 -26.73 -0.12 -2.21 16 11 C -0.11 -1.83 5.81 -27.89 -0.16 -1.99 16 12 C 0.46 7.41 7.96 36.00 0.29 7.70 16 13 O -0.51 -9.59 15.73 -18.75 -0.29 -9.88 16 14 O -0.36 -4.88 10.14 -39.26 -0.40 -5.28 16 15 C 0.07 0.81 4.79 37.16 0.18 0.99 16 16 C -0.12 -1.07 3.40 -88.61 -0.30 -1.37 16 17 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 18 C -0.15 -1.02 6.60 -25.20 -0.17 -1.18 16 19 C 0.05 0.35 7.70 37.73 0.29 0.64 16 20 O -0.38 -3.98 11.52 -35.23 -0.41 -4.39 16 21 C 0.05 0.50 7.10 38.21 0.27 0.77 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 26 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 27 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 30 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.58 7.98 -51.93 -0.41 0.16 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -32.10 306.41 -6.89 -38.99 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -5.85 Total: -4.85 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -0.27 Total: -9.90 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -1.10 Total: -19.55 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.10 -6.89 -38.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847630654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.658 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds