Wall clock time and date at job start Mon Mar 30 2020 04:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47366 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99830 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00094 * 179.97438 * 12 11 10 15 15 C 1.45203 * 116.99897 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47265 * 180.02562 * 15 14 12 17 17 H 1.09002 * 110.80309 * 305.70134 * 16 15 14 18 18 C 1.54812 * 110.90906 * 182.07387 * 16 15 14 19 19 C 1.54097 * 104.18544 * 220.91895 * 18 16 15 20 20 O 1.43747 * 107.29588 * 357.96962 * 19 18 16 21 21 C 1.44422 * 106.99830 * 26.48966 * 20 19 18 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 25 25 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 26 26 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 27 27 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 28 28 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 29 29 H 1.09000 * 109.47076 * 300.00549 * 15 14 12 30 30 H 1.09003 * 109.47054 * 59.99988 * 15 14 12 31 31 H 1.08996 * 110.48528 * 339.59609 * 18 16 15 32 32 H 1.08998 * 110.48502 * 102.24262 * 18 16 15 33 33 H 1.08996 * 109.87651 * 117.39597 * 19 18 16 34 34 H 1.08995 * 109.87999 * 238.39408 * 19 18 16 35 35 H 1.08997 * 110.64577 * 201.48052 * 21 20 19 36 36 H 1.08997 * 110.60020 * 78.47148 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 6 2.4594 -6.1326 0.0048 13 8 3.6474 -5.9118 -0.0005 14 8 2.0120 -7.3981 0.0090 15 6 3.0120 -8.4509 0.0062 16 6 2.3174 -9.8141 0.0110 17 1 1.6154 -9.8879 0.8416 18 6 3.3545 -10.9624 0.0605 19 6 2.7974 -12.0168 -0.9154 20 8 1.5451 -11.5178 -1.4144 21 6 1.6052 -10.0767 -1.3403 22 1 -0.4850 0.8401 0.0004 23 1 0.6281 -2.5552 0.8979 24 1 0.6206 -2.5586 -0.8820 25 1 2.8678 -3.6059 -0.8902 26 1 2.8760 -3.6028 0.8897 27 1 0.8573 -5.0435 0.9006 28 1 0.8498 -5.0461 -0.8793 29 1 3.6308 -8.3619 -0.8867 30 1 3.6389 -8.3589 0.8932 31 1 4.3300 -10.6101 -0.2746 32 1 3.4215 -11.3727 1.0681 33 1 3.4939 -12.1623 -1.7410 34 1 2.6409 -12.9601 -0.3921 35 1 0.6022 -9.6500 -1.3348 36 1 2.1902 -9.6742 -2.1672 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847630654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:34 Heat of formation + Delta-G solvation = -178.886239 kcal Electronic energy + Delta-G solvation = -16834.779051 eV Core-core repulsion = 13896.363379 eV Total energy + Delta-G solvation = -2938.415672 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.61068 -40.30489 -37.77583 -36.16734 -34.23398 -33.94601 -30.70824 -29.94195 -27.26100 -25.78004 -23.63181 -22.66260 -21.69881 -21.29472 -18.77794 -18.47531 -17.91885 -17.52308 -17.22635 -16.53662 -16.27979 -16.14851 -15.67408 -14.86985 -14.51920 -14.13731 -14.06711 -13.86698 -13.39419 -13.11595 -12.92109 -12.63916 -12.52835 -12.46613 -12.40255 -12.17246 -11.78463 -11.65649 -11.60078 -11.45944 -11.37564 -11.14782 -10.68766 -10.53742 -8.19988 -6.30105 1.17706 1.40700 1.43303 1.51194 1.61256 2.42114 2.93153 3.13442 3.44066 3.61550 3.74579 3.90548 4.11840 4.13908 4.18768 4.20421 4.30701 4.38055 4.48549 4.67974 4.77468 4.82010 4.85715 4.90815 5.00079 5.05086 5.12744 5.16146 5.36897 5.53331 5.73367 5.85793 5.86410 6.26318 6.73583 6.85634 7.38639 8.91431 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.073539 B = 0.003213 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.658374 B = 8712.491443 C = 8942.477108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.087 4.087 11 C -0.106 4.106 12 C 0.471 3.529 13 O -0.540 6.540 14 O -0.357 6.357 15 C 0.071 3.929 16 C -0.117 4.117 17 H 0.101 0.899 18 C -0.144 4.144 19 C 0.041 3.959 20 O -0.402 6.402 21 C 0.049 3.951 22 H 0.265 0.735 23 H 0.003 0.997 24 H 0.003 0.997 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.660 -22.767 -0.067 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.125 4.125 11 C -0.143 4.143 12 C 0.316 3.684 13 O -0.430 6.430 14 O -0.273 6.273 15 C -0.002 4.002 16 C -0.135 4.135 17 H 0.119 0.881 18 C -0.181 4.181 19 C -0.036 4.036 20 O -0.321 6.321 21 C -0.027 4.027 22 H 0.074 0.926 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.708 -22.771 -0.149 23.253 hybrid contribution 0.604 1.157 0.052 1.307 sum 5.312 -21.614 -0.097 22.257 Atomic orbital electron populations 1.70062 1.07544 1.27894 1.51466 1.25910 0.95801 1.03101 0.94696 0.85554 0.78365 0.78384 0.79079 1.19382 1.20540 1.19386 1.21660 0.93451 0.92671 1.50881 0.92758 1.19011 0.94200 0.92143 0.95857 1.21276 0.97897 0.92230 1.01050 1.21514 0.97066 0.88622 1.07138 1.24154 0.89302 0.84068 0.70888 1.90640 1.19719 1.85692 1.46908 1.86512 1.41402 1.15553 1.83874 1.23160 0.89782 0.84131 1.03172 1.22738 0.98791 0.91882 1.00119 0.88105 1.22949 0.98870 0.94105 1.02210 1.23345 0.85363 0.98109 0.96759 1.88869 1.37127 1.20324 1.85823 1.23693 1.02279 0.80962 0.95759 0.92647 0.97838 0.97829 0.93346 0.93338 0.86261 0.86260 0.90917 0.90479 0.89301 0.88191 0.91453 0.88279 0.88317 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 2 C 0.00 0.17 5.46 84.66 0.46 0.64 16 3 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.55 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.05 3.06 7.74 -2.92 -0.02 3.04 16 9 C 0.02 1.29 4.97 29.85 0.15 1.43 16 10 C -0.09 -3.62 4.44 30.59 0.14 -3.49 16 11 C -0.11 -3.35 5.81 29.85 0.17 -3.18 16 12 C 0.47 14.59 7.96 71.24 0.57 15.16 16 13 O -0.54 -19.96 15.73 21.96 0.35 -19.61 16 14 O -0.36 -9.05 10.14 -51.43 -0.52 -9.57 16 15 C 0.07 1.42 4.79 71.98 0.34 1.77 16 16 C -0.12 -1.83 3.40 -9.49 -0.03 -1.86 16 17 H 0.10 1.56 8.14 -2.39 -0.02 1.55 16 18 C -0.14 -1.61 6.60 31.58 0.21 -1.40 16 19 C 0.04 0.52 7.70 72.35 0.56 1.08 16 20 O -0.40 -7.94 11.52 -148.98 -1.72 -9.66 16 21 C 0.05 0.88 7.10 72.66 0.52 1.39 16 22 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 23 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 24 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.05 2.08 8.10 -2.39 -0.02 2.06 16 26 H 0.05 2.08 8.10 -2.38 -0.02 2.06 16 27 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 28 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 29 H 0.07 1.46 8.04 -2.39 -0.02 1.44 16 30 H 0.08 1.51 8.13 -2.39 -0.02 1.49 16 31 H 0.09 0.87 7.86 -2.39 -0.02 0.85 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.10 7.98 -2.39 -0.02 1.08 16 Total: -1.00 -68.04 306.41 4.77 -63.27 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.04 Total: 4.50 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 3.31 Total: -19.80 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.28 Total: -55.68 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -1.89 Total: -38.84 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -68.04 4.77 -63.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847630654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.615 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds