Wall clock time and date at job start Mon Mar 30 2020 04:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48494 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47105 * 300.00086 * 3 2 1 6 6 H 1.48498 * 109.47087 * 59.99847 * 3 2 1 7 7 C 1.37874 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00229 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99974 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47083 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.46910 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00108 * 0.02562 * 12 11 10 14 14 O 1.34230 * 119.99923 * 179.97438 * 12 11 10 15 15 C 1.45199 * 117.00373 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47410 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47138 * 180.02562 * 16 15 14 18 18 O 1.42906 * 115.55051 * 325.66650 * 17 16 15 19 19 C 1.53000 * 117.49997 * 179.97438 * 17 16 15 20 20 C 1.53002 * 60.02940 * 252.49592 * 19 17 16 21 21 H 0.97007 * 120.00011 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47018 * 60.00765 * 9 7 2 23 23 H 1.08997 * 109.47627 * 300.00470 * 9 7 2 24 24 H 1.08996 * 109.46984 * 60.00233 * 10 9 7 25 25 H 1.09002 * 109.47154 * 300.00060 * 10 9 7 26 26 H 1.09003 * 109.46818 * 60.00215 * 11 10 9 27 27 H 1.09002 * 109.47005 * 299.99944 * 11 10 9 28 28 H 1.09001 * 109.46804 * 60.00159 * 15 14 12 29 29 H 1.09004 * 109.47200 * 300.00675 * 15 14 12 30 30 H 1.08996 * 109.47198 * 59.99602 * 16 15 14 31 31 H 1.08998 * 109.46791 * 299.99807 * 16 15 14 32 32 H 0.96704 * 113.99690 * 34.32990 * 18 17 16 33 33 H 1.09002 * 117.49833 * 359.97438 * 19 17 16 34 34 H 1.09002 * 117.49953 * 144.99738 * 19 17 16 35 35 H 1.09000 * 117.49996 * 107.50493 * 20 19 17 36 36 H 1.08999 * 117.49664 * 252.51862 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4595 -6.1325 -0.0018 13 8 3.6474 -5.9117 -0.0013 14 8 2.0121 -7.3981 -0.0019 15 6 3.0121 -8.4508 -0.0020 16 6 2.3175 -9.8140 -0.0027 17 6 3.3712 -10.9233 -0.0021 18 8 4.5682 -10.6368 -0.7284 19 6 2.8738 -12.3702 -0.0022 20 6 3.4987 -11.7768 1.2621 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.8718 -3.6043 0.8894 25 1 2.8719 -3.6043 -0.8905 26 1 0.8539 -5.0445 -0.8915 27 1 0.8533 -5.0451 0.8886 28 1 3.6348 -8.3605 0.8881 29 1 3.6350 -8.3603 -0.8919 30 1 1.6950 -9.9041 -0.8929 31 1 1.6944 -9.9048 0.8870 32 1 4.8362 -9.7083 -0.6942 33 1 1.7958 -12.5318 -0.0022 34 1 3.4594 -13.1037 -0.5564 35 1 2.8319 -11.5482 2.0935 36 1 4.4955 -12.1197 1.5393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848867140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:51 Heat of formation + Delta-G solvation = -132.718548 kcal Electronic energy + Delta-G solvation = -16649.488324 eV Core-core repulsion = 13713.074633 eV Total energy + Delta-G solvation = -2936.413690 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.40535 -39.11020 -36.56503 -34.50727 -34.33615 -32.22036 -31.49534 -28.17225 -24.82701 -23.57177 -22.82483 -21.19926 -20.78771 -19.86848 -17.87255 -16.93386 -16.78488 -16.55919 -15.88936 -15.24744 -14.88023 -14.69756 -14.42116 -13.81242 -13.22587 -13.09230 -12.42041 -12.30276 -12.12168 -11.93560 -11.82573 -11.73660 -11.44600 -10.89476 -10.86840 -10.69952 -10.66044 -10.57431 -10.23058 -9.76814 -9.65342 -9.42598 -9.09928 -8.36458 -6.01646 -4.03568 2.42411 2.64630 3.26840 3.31470 3.38972 3.44248 3.60048 4.20212 4.37268 4.45249 4.46634 4.70813 4.92411 4.98739 5.11629 5.24991 5.32366 5.34652 5.50568 5.51509 5.57802 5.58621 5.64871 5.74149 6.05917 6.49397 6.58767 6.78808 7.04424 7.17637 7.64766 7.75986 7.94477 7.98208 8.40759 9.03448 9.60798 11.09839 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.076104 B = 0.003082 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.829798 B = 9083.728403 C = 9305.543221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.100 4.100 11 C -0.112 4.112 12 C 0.461 3.539 13 O -0.507 6.507 14 O -0.360 6.360 15 C 0.058 3.942 16 C -0.108 4.108 17 C 0.057 3.943 18 O -0.532 6.532 19 C -0.157 4.157 20 C -0.199 4.199 21 H 0.260 0.740 22 H 0.018 0.982 23 H 0.018 0.982 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.383 0.617 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -22.107 0.995 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.138 4.138 11 C -0.149 4.149 12 C 0.304 3.696 13 O -0.394 6.394 14 O -0.277 6.277 15 C -0.016 4.016 16 C -0.145 4.145 17 C 0.016 3.984 18 O -0.339 6.339 19 C -0.194 4.194 20 C -0.236 4.236 21 H 0.070 0.930 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.233 0.767 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.258 -22.579 0.868 22.829 hybrid contribution 0.620 1.415 0.116 1.549 sum 3.878 -21.164 0.985 21.539 Atomic orbital electron populations 1.69973 1.06045 1.26543 1.51032 1.25023 0.94870 0.99315 0.95301 0.86522 0.80187 0.83672 0.77566 1.19687 1.21001 1.21002 1.21274 0.93218 0.90894 1.50379 0.92479 1.19133 0.93893 0.91179 0.97459 1.21587 0.98971 0.91214 1.01997 1.21713 0.97309 0.90548 1.05337 1.24474 0.90232 0.83240 0.71629 1.90645 1.18527 1.85056 1.45183 1.86541 1.40458 1.16099 1.84633 1.22872 0.90792 0.85336 1.02584 1.21539 0.97448 0.90473 1.05064 1.21373 0.87189 0.92468 0.97408 1.86458 1.41038 1.32995 1.73419 1.23248 1.01400 0.94194 1.00602 1.23714 1.03135 1.04439 0.92302 0.93036 0.96322 0.96339 0.92416 0.92412 0.88009 0.88015 0.90917 0.91096 0.89375 0.89134 0.76662 0.87595 0.87983 0.88041 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.07 4.44 -26.73 -0.12 -2.19 16 11 C -0.11 -1.81 5.81 -27.88 -0.16 -1.97 16 12 C 0.46 7.34 7.96 36.01 0.29 7.63 16 13 O -0.51 -9.41 15.73 -18.75 -0.29 -9.71 16 14 O -0.36 -4.82 10.22 -39.26 -0.40 -5.22 16 15 C 0.06 0.61 4.61 37.16 0.17 0.79 16 16 C -0.11 -0.90 5.85 -26.74 -0.16 -1.06 16 17 C 0.06 0.49 3.18 -90.59 -0.29 0.20 16 18 O -0.53 -5.35 13.80 -35.23 -0.49 -5.84 16 19 C -0.16 -1.16 10.20 -26.73 -0.27 -1.43 16 20 C -0.20 -1.48 10.13 -26.69 -0.27 -1.76 16 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 22 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 25 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 26 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.07 0.72 6.79 -51.93 -0.35 0.37 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.68 7.90 -51.93 -0.41 0.27 16 32 H 0.38 2.99 6.58 45.56 0.30 3.29 16 33 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.64 8.05 -51.93 -0.42 0.22 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 310.45 15.07 4.68 4.68 Total: -1.00 -32.43 310.45 -7.22 -39.65 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.07 Total: -1.29 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -1.36 Total: -12.98 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.74 Total: -26.02 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -1.18 Total: -20.77 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.43 -7.22 -39.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848867140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.069 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds