Wall clock time and date at job start Mon Mar 30 2020 04:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48494 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47105 * 300.00086 * 3 2 1 6 6 H 1.48498 * 109.47087 * 59.99847 * 3 2 1 7 7 C 1.37874 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00229 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99974 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47083 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.46910 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00108 * 0.02562 * 12 11 10 14 14 O 1.34230 * 119.99923 * 179.97438 * 12 11 10 15 15 C 1.45199 * 117.00373 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47410 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47138 * 180.02562 * 16 15 14 18 18 O 1.42906 * 115.55051 * 325.66650 * 17 16 15 19 19 C 1.53000 * 117.49997 * 179.97438 * 17 16 15 20 20 C 1.53002 * 60.02940 * 252.49592 * 19 17 16 21 21 H 0.97007 * 120.00011 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47018 * 60.00765 * 9 7 2 23 23 H 1.08997 * 109.47627 * 300.00470 * 9 7 2 24 24 H 1.08996 * 109.46984 * 60.00233 * 10 9 7 25 25 H 1.09002 * 109.47154 * 300.00060 * 10 9 7 26 26 H 1.09003 * 109.46818 * 60.00215 * 11 10 9 27 27 H 1.09002 * 109.47005 * 299.99944 * 11 10 9 28 28 H 1.09001 * 109.46804 * 60.00159 * 15 14 12 29 29 H 1.09004 * 109.47200 * 300.00675 * 15 14 12 30 30 H 1.08996 * 109.47198 * 59.99602 * 16 15 14 31 31 H 1.08998 * 109.46791 * 299.99807 * 16 15 14 32 32 H 0.96704 * 113.99690 * 34.32990 * 18 17 16 33 33 H 1.09002 * 117.49833 * 359.97438 * 19 17 16 34 34 H 1.09002 * 117.49953 * 144.99738 * 19 17 16 35 35 H 1.09000 * 117.49996 * 107.50493 * 20 19 17 36 36 H 1.08999 * 117.49664 * 252.51862 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4595 -6.1325 -0.0018 13 8 3.6474 -5.9117 -0.0013 14 8 2.0121 -7.3981 -0.0019 15 6 3.0121 -8.4508 -0.0020 16 6 2.3175 -9.8140 -0.0027 17 6 3.3712 -10.9233 -0.0021 18 8 4.5682 -10.6368 -0.7284 19 6 2.8738 -12.3702 -0.0022 20 6 3.4987 -11.7768 1.2621 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.8718 -3.6043 0.8894 25 1 2.8719 -3.6043 -0.8905 26 1 0.8539 -5.0445 -0.8915 27 1 0.8533 -5.0451 0.8886 28 1 3.6348 -8.3605 0.8881 29 1 3.6350 -8.3603 -0.8919 30 1 1.6950 -9.9041 -0.8929 31 1 1.6944 -9.9048 0.8870 32 1 4.8362 -9.7083 -0.6942 33 1 1.7958 -12.5318 -0.0022 34 1 3.4594 -13.1037 -0.5564 35 1 2.8319 -11.5482 2.0935 36 1 4.4955 -12.1197 1.5393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848867140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:50 Heat of formation + Delta-G solvation = -153.196411 kcal Electronic energy + Delta-G solvation = -16650.376311 eV Core-core repulsion = 13713.074633 eV Total energy + Delta-G solvation = -2937.301677 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.59099 -39.81849 -37.75307 -36.16952 -35.18088 -34.11802 -32.38783 -29.93318 -26.37193 -24.79446 -23.40968 -22.71733 -21.52871 -21.32428 -18.99268 -18.47243 -17.89520 -17.75068 -17.25216 -16.45131 -16.24548 -15.77973 -15.41243 -15.05562 -14.52587 -14.13724 -13.94004 -13.82451 -13.30564 -13.03278 -12.92596 -12.66857 -12.61101 -12.51123 -12.40982 -12.33989 -11.74855 -11.68402 -11.54853 -11.48840 -11.31494 -11.10319 -10.54523 -10.27885 -8.20340 -6.30140 1.16552 1.40270 1.40923 1.53439 1.57127 2.42002 2.67652 2.99103 3.13291 3.42940 3.67708 3.79988 3.92065 4.00827 4.14519 4.19859 4.22241 4.38328 4.61359 4.71726 4.73822 4.84114 4.91005 4.93000 4.96919 5.04945 5.15933 5.19959 5.35124 5.53778 5.73512 5.86551 6.26388 6.55223 6.72142 6.85925 7.38770 8.91445 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.076104 B = 0.003082 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.829798 B = 9083.728403 C = 9305.543221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.087 4.087 11 C -0.106 4.106 12 C 0.470 3.530 13 O -0.538 6.538 14 O -0.354 6.354 15 C 0.053 3.947 16 C -0.097 4.097 17 C 0.040 3.960 18 O -0.550 6.550 19 C -0.154 4.154 20 C -0.196 4.196 21 H 0.265 0.735 22 H 0.004 0.996 23 H 0.004 0.996 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.389 0.611 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.986 -22.803 1.221 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.125 4.125 11 C -0.143 4.143 12 C 0.315 3.685 13 O -0.428 6.428 14 O -0.271 6.271 15 C -0.021 4.021 16 C -0.134 4.134 17 C -0.001 4.001 18 O -0.359 6.359 19 C -0.191 4.191 20 C -0.233 4.233 21 H 0.073 0.927 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.240 0.760 33 H 0.143 0.857 34 H 0.116 0.884 35 H 0.134 0.866 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.185 -23.300 1.095 23.542 hybrid contribution 0.634 1.554 0.048 1.679 sum 3.820 -21.746 1.142 22.108 Atomic orbital electron populations 1.70074 1.07514 1.27749 1.51651 1.25902 0.95803 1.03090 0.94749 0.85448 0.78938 0.79045 0.77928 1.19113 1.20208 1.20177 1.21708 0.93425 0.92659 1.50588 0.92821 1.19023 0.94215 0.92143 0.95908 1.21280 0.97905 0.92228 1.01067 1.21521 0.97040 0.88538 1.07196 1.24192 0.89374 0.84027 0.70906 1.90641 1.19679 1.85638 1.46813 1.86503 1.41089 1.15522 1.83942 1.23139 0.90670 0.85388 1.02892 1.21484 0.97269 0.88777 1.05873 1.21547 0.86973 0.93179 0.98434 1.86432 1.41850 1.33704 1.73938 1.23372 1.02483 0.93064 1.00154 1.23781 1.03323 1.03721 0.92514 0.92663 0.97788 0.97765 0.93317 0.93360 0.86227 0.86155 0.90748 0.90862 0.89027 0.87858 0.75975 0.85747 0.88363 0.86616 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.55 -31.30 9.11 25.60 0.23 -31.07 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.09 -3.61 4.44 30.60 0.14 -3.47 16 11 C -0.11 -3.29 5.81 29.85 0.17 -3.12 16 12 C 0.47 14.39 7.96 71.24 0.57 14.95 16 13 O -0.54 -19.65 15.73 21.98 0.35 -19.30 16 14 O -0.35 -8.82 10.22 -51.41 -0.53 -9.34 16 15 C 0.05 1.03 4.61 71.98 0.33 1.36 16 16 C -0.10 -1.41 5.85 30.59 0.18 -1.23 16 17 C 0.04 0.62 3.18 -10.77 -0.03 0.59 16 18 O -0.55 -10.66 13.80 -148.98 -2.06 -12.72 16 19 C -0.15 -1.96 10.20 30.60 0.31 -1.65 16 20 C -0.20 -2.58 10.13 30.62 0.31 -2.27 16 21 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 22 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 23 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 24 H 0.05 2.08 8.10 -2.39 -0.02 2.06 16 25 H 0.05 2.06 8.10 -2.39 -0.02 2.04 16 26 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 27 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 28 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 29 H 0.07 1.41 6.79 -2.38 -0.02 1.39 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.25 7.90 -2.39 -0.02 1.24 16 32 H 0.39 5.91 6.58 -74.05 -0.49 5.42 16 33 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.12 1.17 8.05 -2.39 -0.02 1.15 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -68.53 310.45 3.47 -65.06 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.57 Total: 9.13 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 2.82 Total: -23.90 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.44 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -2.23 Total: -41.36 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -68.53 3.47 -65.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848867140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.132 kcal (2) G-P(sol) polarization free energy of solvation -68.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds