Wall clock time and date at job start Mon Mar 30 2020 04:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47040 * 2 1 4 4 H 1.08997 * 109.47164 * 54.99449 * 3 2 1 5 5 O 1.42902 * 109.47046 * 294.99819 * 3 2 1 6 6 C 1.53000 * 109.47094 * 174.99988 * 3 2 1 7 7 C 1.50703 * 109.46923 * 184.99927 * 6 3 2 8 8 O 1.20824 * 119.99868 * 359.97438 * 7 6 3 9 9 O 1.34232 * 119.99981 * 180.02562 * 7 6 3 10 10 C 1.45193 * 117.00307 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47629 * 179.97438 * 10 9 7 12 12 C 1.50698 * 115.55091 * 294.88972 * 11 10 9 13 13 H 1.07995 * 120.00548 * 95.15680 * 12 11 10 14 14 C 1.37887 * 119.99607 * 274.88498 * 12 11 10 15 15 N 1.31512 * 119.99742 * 6.38500 * 14 12 11 16 16 Si 1.86792 * 120.00001 * 186.38825 * 14 12 11 17 17 H 1.48497 * 109.47138 * 89.99854 * 16 14 12 18 18 H 1.48507 * 109.46983 * 210.00016 * 16 14 12 19 19 H 1.48507 * 109.47143 * 329.99898 * 16 14 12 20 20 C 1.53001 * 117.49567 * 80.55078 * 11 10 9 21 21 C 1.52997 * 117.50058 * 149.21087 * 11 10 9 22 22 H 1.08996 * 109.46920 * 60.00375 * 1 2 3 23 23 H 1.08999 * 109.47223 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47487 * 300.00550 * 1 2 3 25 25 H 1.09002 * 109.47065 * 240.00206 * 2 1 3 26 26 H 1.08996 * 109.46920 * 119.99625 * 2 1 3 27 27 H 0.96706 * 113.99918 * 300.00621 * 5 3 2 28 28 H 1.09001 * 109.47341 * 64.99919 * 6 3 2 29 29 H 1.09000 * 109.47107 * 304.99491 * 6 3 2 30 30 H 1.09004 * 109.47351 * 59.98882 * 10 9 7 31 31 H 1.09010 * 109.46838 * 299.99816 * 10 9 7 32 32 H 0.97004 * 120.00151 * 179.97438 * 15 14 12 33 33 H 1.09003 * 117.50064 * 215.00337 * 20 11 10 34 34 H 1.08997 * 117.50444 * 0.02833 * 20 11 10 35 35 H 1.08997 * 117.50286 * 359.97438 * 21 11 10 36 36 H 1.09000 * 117.49777 * 144.98214 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 8 1.6620 2.0814 -1.2211 6 6 3.5648 1.4444 0.1257 7 6 4.0569 2.8634 0.2492 8 8 3.2689 3.7793 0.2374 9 8 5.3707 3.1100 0.3713 10 6 5.7727 4.5004 0.4864 11 6 7.2949 4.5823 0.6165 12 6 7.8739 3.9743 1.8679 13 1 8.2400 2.9584 1.8554 14 6 7.9414 4.7172 3.0276 15 7 7.3884 5.9093 3.0780 16 14 8.8184 4.0303 4.5270 17 1 10.2499 4.4230 4.4863 18 1 8.1911 4.5725 5.7590 19 1 8.7113 2.5491 4.5278 20 6 8.1203 4.4765 -0.6674 21 6 7.9868 5.8229 0.0483 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0141 1.6541 -2.0140 28 1 4.0030 0.9836 -0.7596 29 1 3.8570 0.8801 1.0114 30 1 5.3086 4.9410 1.3688 31 1 5.4538 5.0455 -0.4022 32 1 7.4356 6.4318 3.8940 33 1 9.0821 3.9672 -0.6069 34 1 7.5789 4.3490 -1.6048 35 1 7.3576 6.5807 -0.4186 36 1 8.8606 6.1997 0.5799 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849788631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:40 Heat of formation + Delta-G solvation = -130.580464 kcal Electronic energy + Delta-G solvation = -17605.421410 eV Core-core repulsion = 14669.100434 eV Total energy + Delta-G solvation = -2936.320976 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.85397 -37.86754 -36.60070 -35.10069 -32.98690 -31.96519 -30.63476 -26.91858 -25.37530 -24.38588 -21.58287 -21.17869 -20.15653 -19.24370 -16.92787 -16.68319 -16.39810 -16.05774 -15.29470 -14.97821 -14.59755 -14.49549 -13.81862 -13.60830 -13.00390 -12.46587 -12.33468 -12.10330 -11.88727 -11.60974 -11.57703 -11.14584 -11.00264 -10.87601 -10.79664 -10.54844 -10.28738 -10.10008 -9.90715 -9.79705 -9.49265 -8.82279 -8.47620 -8.20343 -6.07188 -4.12560 2.85538 3.27721 3.34169 3.35169 3.38117 4.37184 4.38871 4.60562 4.77298 4.92462 5.16071 5.21192 5.23530 5.31663 5.49499 5.60188 5.69369 5.73005 5.77596 6.01061 6.08565 6.11547 6.26356 6.34996 6.55219 6.67526 6.73871 7.03167 7.31638 7.37120 7.49781 7.66106 7.85895 8.37241 8.52787 8.89035 9.53167 11.02307 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.028393 B = 0.005488 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.936060 B = 5101.259390 C = 5641.867167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.155 4.155 3 C 0.118 3.882 4 H 0.106 0.894 5 O -0.546 6.546 6 C -0.150 4.150 7 C 0.450 3.550 8 O -0.509 6.509 9 O -0.342 6.342 10 C 0.117 3.883 11 C 0.037 3.963 12 C -0.490 4.490 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.881 5.881 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.205 4.205 21 C -0.146 4.146 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.367 0.633 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.261 0.739 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.258 -10.427 -6.228 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C 0.059 3.941 4 H 0.124 0.876 5 O -0.350 6.350 6 C -0.188 4.188 7 C 0.292 3.708 8 O -0.398 6.398 9 O -0.258 6.258 10 C 0.044 3.956 11 C 0.037 3.963 12 C -0.527 4.527 13 H 0.081 0.919 14 C -0.135 4.135 15 N -0.518 5.518 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.243 4.243 21 C -0.184 4.184 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.213 0.787 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.798 -9.548 -5.676 14.170 hybrid contribution 0.810 -0.501 0.573 1.111 sum -7.988 -10.049 -5.103 13.814 Atomic orbital electron populations 1.21689 0.94949 1.01292 1.02634 1.22248 0.97333 0.96800 1.02943 1.21800 0.90751 0.92642 0.88904 0.87602 1.86727 1.76327 1.56981 1.14993 1.22167 0.97707 0.92867 1.06040 1.23334 0.81924 0.91972 0.73529 1.90652 1.56643 1.46799 1.45710 1.86505 1.24051 1.33612 1.81584 1.22852 0.96912 0.76147 0.99727 1.18785 0.87014 0.98325 0.92193 1.20387 1.40365 0.99147 0.92844 0.91897 1.25022 0.94993 0.94910 0.98557 1.70001 1.42835 1.11148 1.27798 0.86582 0.79841 0.79356 0.82182 1.20555 1.21243 1.19766 1.23000 1.02457 1.02418 0.96386 1.22543 1.02912 0.90082 1.02826 0.92017 0.92895 0.92607 0.91478 0.90762 0.78688 0.87952 0.87117 0.90687 0.94427 0.92892 0.90096 0.91574 0.91635 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.91 16 2 C -0.16 -1.34 5.61 -26.73 -0.15 -1.49 16 3 C 0.12 1.41 2.51 -26.73 -0.07 1.35 16 4 H 0.11 1.46 7.96 -51.93 -0.41 1.05 16 5 O -0.55 -7.18 12.11 -49.68 -0.60 -7.78 16 6 C -0.15 -1.93 5.49 -27.88 -0.15 -2.08 16 7 C 0.45 8.64 7.84 36.01 0.28 8.92 16 8 O -0.51 -11.27 15.17 -24.05 -0.36 -11.64 16 9 O -0.34 -7.57 10.16 -39.26 -0.40 -7.97 16 10 C 0.12 2.84 5.28 37.15 0.20 3.04 16 11 C 0.04 0.94 1.61 -155.67 -0.25 0.69 16 12 C -0.49 -13.41 8.77 -34.44 -0.30 -13.72 16 13 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 14 C 0.07 1.87 5.39 -17.82 -0.10 1.78 16 15 N -0.88 -25.04 12.93 55.43 0.72 -24.33 16 16 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.21 -4.51 9.96 -26.69 -0.27 -4.78 16 21 C -0.15 -3.43 9.43 -26.69 -0.25 -3.68 16 22 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.37 3.29 9.05 45.56 0.41 3.70 16 28 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.07 2.02 8.13 -51.93 -0.42 1.60 16 31 H 0.04 0.87 8.09 -51.92 -0.42 0.45 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 LS Contribution 311.53 15.07 4.69 4.69 Total: -1.00 -31.88 311.53 -6.69 -38.57 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.02 Total: 3.32 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -0.69 Total: -10.89 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.72 Total: -24.33 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -1.37 Total: -27.40 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.88 -6.69 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849788631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.011 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds